data_4GFM # _model_server_result.job_id 8G2YgFae73kdRLo-SroqpQ _model_server_result.datetime_utc '2024-12-03 03:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4GFM # _exptl.entry_id 4GFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,6-dichloro-N-(2-oxo-2,5-dihydropyridin-4-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GFM _cell.length_a 93.094 _cell.length_b 102.084 _cell.length_c 67.754 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 176 A GLU 1006 1_555 A N PTR 177 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C PTR 177 A PTR 1007 1_555 A N PTR 178 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C PTR 178 A PTR 1008 1_555 A N LYS 179 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C12 H8 Cl2 N2 O2' _chem_comp.formula_weight 283.11 _chem_comp.id 0X2 _chem_comp.mon_nstd_flag . _chem_comp.name 2,6-dichloro-N-(2-oxo-2,5-dihydropyridin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N2 0X2 doub 1 n n C10 C9 0X2 sing 2 n n CL1 C5 0X2 sing 3 n n N2 C11 0X2 sing 4 n n C9 C8 0X2 sing 5 n n C11 O2 0X2 doub 6 n n C11 C12 0X2 sing 7 n n C8 C12 0X2 doub 8 n n C8 N1 0X2 sing 9 n n C5 C6 0X2 doub 10 n y C5 C4 0X2 sing 11 n y N1 C7 0X2 sing 12 n n C6 C1 0X2 sing 13 n y C7 O1 0X2 doub 14 n n C7 C4 0X2 sing 15 n n C4 C3 0X2 doub 16 n y C1 C2 0X2 doub 17 n y C3 C2 0X2 sing 18 n y C3 CL2 0X2 sing 19 n n C6 H1 0X2 sing 20 n n C9 H2 0X2 sing 21 n n C9 H3 0X2 sing 22 n n C10 H4 0X2 sing 23 n n C12 H5 0X2 sing 24 n n N1 H6 0X2 sing 25 n n C2 H7 0X2 sing 26 n n C1 H8 0X2 sing 27 n n # _atom_sites.entry_id 4GFM _atom_sites.fract_transf_matrix[1][1] 0.010742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0X2 A 1 1201 1 0X2 0X2 . C 3 HOH A 1 1301 1 HOH HOH . C 3 HOH A 2 1302 2 HOH HOH . C 3 HOH A 3 1303 3 HOH HOH . C 3 HOH A 4 1304 4 HOH HOH . C 3 HOH A 5 1305 5 HOH HOH . C 3 HOH A 6 1306 6 HOH HOH . C 3 HOH A 7 1307 7 HOH HOH . C 3 HOH A 8 1308 8 HOH HOH . C 3 HOH A 9 1309 9 HOH HOH . C 3 HOH A 10 1310 10 HOH HOH . C 3 HOH A 11 1311 11 HOH HOH . C 3 HOH A 12 1312 12 HOH HOH . C 3 HOH A 13 1313 13 HOH HOH . C 3 HOH A 14 1314 14 HOH HOH . C 3 HOH A 15 1315 15 HOH HOH . C 3 HOH A 16 1316 16 HOH HOH . C 3 HOH A 17 1317 17 HOH HOH . C 3 HOH A 18 1318 18 HOH HOH . C 3 HOH A 19 1319 19 HOH HOH . C 3 HOH A 20 1320 20 HOH HOH . C 3 HOH A 21 1321 21 HOH HOH . C 3 HOH A 22 1322 22 HOH HOH . C 3 HOH A 23 1323 23 HOH HOH . C 3 HOH A 24 1324 24 HOH HOH . C 3 HOH A 25 1325 25 HOH HOH . C 3 HOH A 26 1326 26 HOH HOH . C 3 HOH A 27 1327 27 HOH HOH . C 3 HOH A 28 1328 28 HOH HOH . C 3 HOH A 29 1329 29 HOH HOH . C 3 HOH A 30 1330 30 HOH HOH . C 3 HOH A 31 1331 31 HOH HOH . C 3 HOH A 32 1332 32 HOH HOH . C 3 HOH A 33 1333 33 HOH HOH . C 3 HOH A 34 1334 34 HOH HOH . C 3 HOH A 35 1335 35 HOH HOH . C 3 HOH A 36 1336 36 HOH HOH . C 3 HOH A 37 1337 37 HOH HOH . C 3 HOH A 38 1338 38 HOH HOH . C 3 HOH A 39 1339 39 HOH HOH . C 3 HOH A 40 1340 40 HOH HOH . C 3 HOH A 41 1341 41 HOH HOH . C 3 HOH A 42 1342 42 HOH HOH . C 3 HOH A 43 1343 43 HOH HOH . C 3 HOH A 44 1344 44 HOH HOH . C 3 HOH A 45 1345 45 HOH HOH . C 3 HOH A 46 1346 46 HOH HOH . C 3 HOH A 47 1347 47 HOH HOH . C 3 HOH A 48 1348 48 HOH HOH . C 3 HOH A 49 1349 49 HOH HOH . C 3 HOH A 50 1350 50 HOH HOH . C 3 HOH A 51 1351 51 HOH HOH . C 3 HOH A 52 1352 52 HOH HOH . C 3 HOH A 53 1353 53 HOH HOH . C 3 HOH A 54 1354 54 HOH HOH . C 3 HOH A 55 1355 55 HOH HOH . C 3 HOH A 56 1356 56 HOH HOH . C 3 HOH A 57 1357 57 HOH HOH . C 3 HOH A 58 1358 58 HOH HOH . C 3 HOH A 59 1359 59 HOH HOH . C 3 HOH A 60 1360 60 HOH HOH . C 3 HOH A 61 1361 61 HOH HOH . C 3 HOH A 62 1362 62 HOH HOH . C 3 HOH A 63 1363 63 HOH HOH . C 3 HOH A 64 1364 64 HOH HOH . C 3 HOH A 65 1365 65 HOH HOH . C 3 HOH A 66 1366 66 HOH HOH . C 3 HOH A 67 1367 67 HOH HOH . C 3 HOH A 68 1368 68 HOH HOH . C 3 HOH A 69 1369 70 HOH HOH . C 3 HOH A 70 1370 74 HOH HOH . C 3 HOH A 71 1371 75 HOH HOH . C 3 HOH A 72 1372 76 HOH HOH . C 3 HOH A 73 1373 77 HOH HOH . C 3 HOH A 74 1374 78 HOH HOH . C 3 HOH A 75 1375 79 HOH HOH . C 3 HOH A 76 1376 81 HOH HOH . C 3 HOH A 77 1377 82 HOH HOH . C 3 HOH A 78 1378 83 HOH HOH . C 3 HOH A 79 1379 84 HOH HOH . C 3 HOH A 80 1380 85 HOH HOH . C 3 HOH A 81 1381 86 HOH HOH . C 3 HOH A 82 1382 87 HOH HOH . C 3 HOH A 83 1383 88 HOH HOH . C 3 HOH A 84 1384 89 HOH HOH . C 3 HOH A 85 1385 90 HOH HOH . C 3 HOH A 86 1386 91 HOH HOH . C 3 HOH A 87 1387 92 HOH HOH . C 3 HOH A 88 1388 93 HOH HOH . C 3 HOH A 89 1389 94 HOH HOH . C 3 HOH A 90 1390 95 HOH HOH . C 3 HOH A 91 1391 96 HOH HOH . C 3 HOH A 92 1392 97 HOH HOH . C 3 HOH A 93 1393 99 HOH HOH . C 3 HOH A 94 1394 100 HOH HOH . C 3 HOH A 95 1395 101 HOH HOH . C 3 HOH A 96 1396 102 HOH HOH . C 3 HOH A 97 1397 103 HOH HOH . C 3 HOH A 98 1398 104 HOH HOH . C 3 HOH A 99 1399 105 HOH HOH . C 3 HOH A 100 1400 107 HOH HOH . C 3 HOH A 101 1401 109 HOH HOH . C 3 HOH A 102 1402 110 HOH HOH . C 3 HOH A 103 1403 111 HOH HOH . C 3 HOH A 104 1404 113 HOH HOH . C 3 HOH A 105 1405 114 HOH HOH . C 3 HOH A 106 1406 115 HOH HOH . C 3 HOH A 107 1407 116 HOH HOH . C 3 HOH A 108 1408 117 HOH HOH . C 3 HOH A 109 1409 118 HOH HOH . C 3 HOH A 110 1410 119 HOH HOH . C 3 HOH A 111 1411 120 HOH HOH . C 3 HOH A 112 1412 121 HOH HOH . C 3 HOH A 113 1413 123 HOH HOH . C 3 HOH A 114 1414 125 HOH HOH . C 3 HOH A 115 1415 126 HOH HOH . C 3 HOH A 116 1416 127 HOH HOH . C 3 HOH A 117 1417 128 HOH HOH . C 3 HOH A 118 1418 130 HOH HOH . C 3 HOH A 119 1419 132 HOH HOH . C 3 HOH A 120 1420 134 HOH HOH . C 3 HOH A 121 1421 135 HOH HOH . C 3 HOH A 122 1422 136 HOH HOH . C 3 HOH A 123 1423 137 HOH HOH . C 3 HOH A 124 1424 139 HOH HOH . C 3 HOH A 125 1425 140 HOH HOH . C 3 HOH A 126 1426 141 HOH HOH . C 3 HOH A 127 1427 142 HOH HOH . C 3 HOH A 128 1428 145 HOH HOH . C 3 HOH A 129 1429 146 HOH HOH . C 3 HOH A 130 1430 147 HOH HOH . C 3 HOH A 131 1431 148 HOH HOH . C 3 HOH A 132 1432 149 HOH HOH . C 3 HOH A 133 1433 150 HOH HOH . C 3 HOH A 134 1434 151 HOH HOH . C 3 HOH A 135 1435 153 HOH HOH . C 3 HOH A 136 1436 154 HOH HOH . C 3 HOH A 137 1437 155 HOH HOH . C 3 HOH A 138 1438 156 HOH HOH . C 3 HOH A 139 1439 157 HOH HOH . C 3 HOH A 140 1440 158 HOH HOH . C 3 HOH A 141 1441 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 0X2 . . . B 2 31.372 -14.538 3.879 1 26.2 ? C4 0X2 1201 A 1 HETATM 2 C C5 0X2 . . . B 2 31.027 -15.437 2.882 1 27.47 ? C5 0X2 1201 A 1 HETATM 3 C C6 0X2 . . . B 2 30.515 -16.703 3.185 1 26.27 ? C6 0X2 1201 A 1 HETATM 4 C C11 0X2 . . . B 2 34.266 -9.744 1.968 1 24.53 ? C11 0X2 1201 A 1 HETATM 5 C C7 0X2 . . . B 2 31.935 -13.17 3.513 1 30.23 ? C7 0X2 1201 A 1 HETATM 6 C C8 0X2 . . . B 2 33.877 -12.074 2.423 1 23.18 ? C8 0X2 1201 A 1 HETATM 7 C C9 0X2 . . . B 2 35.035 -12.352 1.683 1 24.37 ? C9 0X2 1201 A 1 HETATM 8 C C10 0X2 . . . B 2 35.787 -11.314 1.118 1 18.81 ? C10 0X2 1201 A 1 HETATM 9 C C12 0X2 . . . B 2 33.484 -10.742 2.554 1 24.95 ? C12 0X2 1201 A 1 HETATM 10 N N1 0X2 . . . B 2 33.143 -13.171 2.928 1 25.16 ? N1 0X2 1201 A 1 HETATM 11 N N2 0X2 . . . B 2 35.384 -10.048 1.259 1 19.62 ? N2 0X2 1201 A 1 HETATM 12 C C3 0X2 . . . B 2 31.191 -14.959 5.182 1 26.37 ? C3 0X2 1201 A 1 HETATM 13 O O2 0X2 . . . B 2 33.932 -8.549 2.09 1 25.15 ? O2 0X2 1201 A 1 HETATM 14 O O1 0X2 . . . B 2 31.323 -12.128 3.749 1 30.42 ? O1 0X2 1201 A 1 HETATM 15 CL CL2 0X2 . . . B 2 31.612 -13.831 6.455 1 26.08 ? CL2 0X2 1201 A 1 HETATM 16 C C2 0X2 . . . B 2 30.679 -16.207 5.528 1 21.87 ? C2 0X2 1201 A 1 HETATM 17 CL CL1 0X2 . . . B 2 31.231 -14.959 1.176 1 25.86 ? CL1 0X2 1201 A 1 HETATM 18 C C1 0X2 . . . B 2 30.339 -17.096 4.51 1 23.51 ? C1 0X2 1201 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #