data_4GFN # _model_server_result.job_id PfSKTbdeF7bZmhfjvvLqzw _model_server_result.datetime_utc '2024-11-16 12:48:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GFN # _exptl.entry_id 4GFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.89 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GFN _cell.length_a 54.78 _cell.length_b 58.21 _cell.length_c 66.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H18 Cl N7 S' _chem_comp.formula_weight 387.89 _chem_comp.id SUY _chem_comp.mon_nstd_flag . _chem_comp.name (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N23 SUY doub 290 n y C24 N25 SUY sing 291 n y N23 C22 SUY sing 292 n y N25 C26 SUY doub 293 n y C22 C21 SUY doub 294 n y C26 C21 SUY sing 295 n y C21 S20 SUY sing 296 n n N19 C18 SUY sing 297 n n S20 C2 SUY sing 298 n n C18 C16 SUY sing 299 n n C18 C15 SUY sing 300 n n C16 C17 SUY sing 301 n n C16 C15 SUY sing 302 n n C2 N3 SUY doub 303 n y C2 N1 SUY sing 304 n y N3 C4 SUY sing 305 n y C17 N13 SUY sing 306 n n C15 C14 SUY sing 307 n n N1 C6 SUY doub 308 n y N13 C4 SUY sing 309 n n N13 C14 SUY sing 310 n n C4 C5 SUY doub 311 n y C6 C5 SUY sing 312 n y C6 N7 SUY sing 313 n y C5 C9 SUY sing 314 n y N7 C8 SUY sing 315 n y C9 C8 SUY doub 316 n y C9 CL1 SUY sing 317 n n C8 C10 SUY sing 318 n n C10 C11 SUY sing 319 n n C10 H1 SUY sing 320 n n C10 H2 SUY sing 321 n n C11 H3 SUY sing 322 n n C11 H4 SUY sing 323 n n C11 H5 SUY sing 324 n n N7 H6 SUY sing 325 n n C17 H7 SUY sing 326 n n C17 H8 SUY sing 327 n n C16 H9 SUY sing 328 n n C18 H10 SUY sing 329 n n N19 H11 SUY sing 330 n n N19 H12 SUY sing 331 n n C15 H14 SUY sing 332 n n C14 H15 SUY sing 333 n n C14 H16 SUY sing 334 n n C26 H17 SUY sing 335 n n C24 H18 SUY sing 336 n n C22 H19 SUY sing 337 n n # _atom_sites.entry_id 4GFN _atom_sites.fract_transf_matrix[1][1] 0.018255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SUY A 1 301 1 SUY SUY . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 40 HOH HOH . D 4 HOH A 41 441 41 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 44 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 48 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 52 HOH HOH . D 4 HOH A 53 453 53 HOH HOH . D 4 HOH A 54 454 54 HOH HOH . D 4 HOH A 55 455 55 HOH HOH . D 4 HOH A 56 456 56 HOH HOH . D 4 HOH A 57 457 57 HOH HOH . D 4 HOH A 58 458 58 HOH HOH . D 4 HOH A 59 459 59 HOH HOH . D 4 HOH A 60 460 60 HOH HOH . D 4 HOH A 61 461 61 HOH HOH . D 4 HOH A 62 462 62 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 64 HOH HOH . D 4 HOH A 65 465 65 HOH HOH . D 4 HOH A 66 466 66 HOH HOH . D 4 HOH A 67 467 67 HOH HOH . D 4 HOH A 68 468 68 HOH HOH . D 4 HOH A 69 469 69 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 74 HOH HOH . D 4 HOH A 75 475 75 HOH HOH . D 4 HOH A 76 476 76 HOH HOH . D 4 HOH A 77 477 77 HOH HOH . D 4 HOH A 78 478 78 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 80 HOH HOH . D 4 HOH A 81 481 81 HOH HOH . D 4 HOH A 82 482 82 HOH HOH . D 4 HOH A 83 483 83 HOH HOH . D 4 HOH A 84 484 84 HOH HOH . D 4 HOH A 85 485 85 HOH HOH . D 4 HOH A 86 486 86 HOH HOH . D 4 HOH A 87 487 87 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 90 HOH HOH . D 4 HOH A 91 491 91 HOH HOH . D 4 HOH A 92 492 92 HOH HOH . D 4 HOH A 93 493 93 HOH HOH . D 4 HOH A 94 494 94 HOH HOH . D 4 HOH A 95 495 95 HOH HOH . D 4 HOH A 96 496 96 HOH HOH . D 4 HOH A 97 497 97 HOH HOH . D 4 HOH A 98 498 98 HOH HOH . D 4 HOH A 99 499 99 HOH HOH . D 4 HOH A 100 500 100 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 102 HOH HOH . D 4 HOH A 103 503 103 HOH HOH . D 4 HOH A 104 504 104 HOH HOH . D 4 HOH A 105 505 105 HOH HOH . D 4 HOH A 106 506 106 HOH HOH . D 4 HOH A 107 507 107 HOH HOH . D 4 HOH A 108 508 108 HOH HOH . D 4 HOH A 109 509 109 HOH HOH . D 4 HOH A 110 510 110 HOH HOH . D 4 HOH A 111 511 111 HOH HOH . D 4 HOH A 112 512 112 HOH HOH . D 4 HOH A 113 513 113 HOH HOH . D 4 HOH A 114 514 114 HOH HOH . D 4 HOH A 115 515 115 HOH HOH . D 4 HOH A 116 516 116 HOH HOH . D 4 HOH A 117 517 117 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 119 HOH HOH . D 4 HOH A 120 520 120 HOH HOH . D 4 HOH A 121 521 121 HOH HOH . D 4 HOH A 122 522 122 HOH HOH . D 4 HOH A 123 523 123 HOH HOH . D 4 HOH A 124 524 124 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 126 HOH HOH . D 4 HOH A 127 527 127 HOH HOH . D 4 HOH A 128 528 128 HOH HOH . D 4 HOH A 129 529 129 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 131 HOH HOH . D 4 HOH A 132 532 132 HOH HOH . D 4 HOH A 133 533 133 HOH HOH . D 4 HOH A 134 534 134 HOH HOH . D 4 HOH A 135 535 135 HOH HOH . D 4 HOH A 136 536 136 HOH HOH . D 4 HOH A 137 537 137 HOH HOH . D 4 HOH A 138 538 138 HOH HOH . D 4 HOH A 139 539 139 HOH HOH . D 4 HOH A 140 540 140 HOH HOH . D 4 HOH A 141 541 141 HOH HOH . D 4 HOH A 142 542 142 HOH HOH . D 4 HOH A 143 543 143 HOH HOH . D 4 HOH A 144 544 144 HOH HOH . D 4 HOH A 145 545 145 HOH HOH . D 4 HOH A 146 546 146 HOH HOH . D 4 HOH A 147 547 147 HOH HOH . D 4 HOH A 148 548 148 HOH HOH . D 4 HOH A 149 549 149 HOH HOH . D 4 HOH A 150 550 150 HOH HOH . D 4 HOH A 151 551 151 HOH HOH . D 4 HOH A 152 552 152 HOH HOH . D 4 HOH A 153 553 153 HOH HOH . D 4 HOH A 154 554 154 HOH HOH . D 4 HOH A 155 555 155 HOH HOH . D 4 HOH A 156 556 156 HOH HOH . D 4 HOH A 157 557 157 HOH HOH . D 4 HOH A 158 558 158 HOH HOH . D 4 HOH A 159 559 159 HOH HOH . D 4 HOH A 160 560 160 HOH HOH . D 4 HOH A 161 561 161 HOH HOH . D 4 HOH A 162 562 162 HOH HOH . D 4 HOH A 163 563 163 HOH HOH . D 4 HOH A 164 564 164 HOH HOH . D 4 HOH A 165 565 165 HOH HOH . D 4 HOH A 166 566 166 HOH HOH . D 4 HOH A 167 567 167 HOH HOH . D 4 HOH A 168 568 168 HOH HOH . D 4 HOH A 169 569 169 HOH HOH . D 4 HOH A 170 570 170 HOH HOH . D 4 HOH A 171 571 171 HOH HOH . D 4 HOH A 172 572 172 HOH HOH . D 4 HOH A 173 573 173 HOH HOH . D 4 HOH A 174 574 174 HOH HOH . D 4 HOH A 175 575 175 HOH HOH . D 4 HOH A 176 576 176 HOH HOH . D 4 HOH A 177 577 177 HOH HOH . D 4 HOH A 178 578 178 HOH HOH . D 4 HOH A 179 579 179 HOH HOH . D 4 HOH A 180 580 180 HOH HOH . D 4 HOH A 181 581 181 HOH HOH . D 4 HOH A 182 582 182 HOH HOH . D 4 HOH A 183 583 183 HOH HOH . D 4 HOH A 184 584 184 HOH HOH . D 4 HOH A 185 585 185 HOH HOH . D 4 HOH A 186 586 186 HOH HOH . D 4 HOH A 187 587 187 HOH HOH . D 4 HOH A 188 588 188 HOH HOH . D 4 HOH A 189 589 189 HOH HOH . D 4 HOH A 190 590 190 HOH HOH . D 4 HOH A 191 591 191 HOH HOH . D 4 HOH A 192 592 192 HOH HOH . D 4 HOH A 193 593 193 HOH HOH . D 4 HOH A 194 594 194 HOH HOH . D 4 HOH A 195 595 195 HOH HOH . D 4 HOH A 196 596 196 HOH HOH . D 4 HOH A 197 597 197 HOH HOH . D 4 HOH A 198 598 198 HOH HOH . D 4 HOH A 199 599 199 HOH HOH . D 4 HOH A 200 600 200 HOH HOH . D 4 HOH A 201 601 201 HOH HOH . D 4 HOH A 202 602 202 HOH HOH . D 4 HOH A 203 603 203 HOH HOH . D 4 HOH A 204 604 204 HOH HOH . D 4 HOH A 205 605 205 HOH HOH . D 4 HOH A 206 606 206 HOH HOH . D 4 HOH A 207 607 207 HOH HOH . D 4 HOH A 208 608 208 HOH HOH . D 4 HOH A 209 609 209 HOH HOH . D 4 HOH A 210 610 210 HOH HOH . D 4 HOH A 211 611 211 HOH HOH . D 4 HOH A 212 612 212 HOH HOH . D 4 HOH A 213 613 213 HOH HOH . D 4 HOH A 214 614 214 HOH HOH . D 4 HOH A 215 615 215 HOH HOH . D 4 HOH A 216 616 216 HOH HOH . D 4 HOH A 217 617 217 HOH HOH . D 4 HOH A 218 618 218 HOH HOH . D 4 HOH A 219 619 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 SUY . . . B 2 -10.316 -1.963 -11.554 1 23.4 ? CL1 SUY 301 A 1 HETATM 2 C C9 SUY . . . B 2 -11.459 -3.137 -12.38 1 20.58 ? C9 SUY 301 A 1 HETATM 3 C C8 SUY . . . B 2 -12.874 -3.251 -12.019 1 20.46 ? C8 SUY 301 A 1 HETATM 4 C C10 SUY . . . B 2 -13.639 -2.416 -11.016 1 19.69 ? C10 SUY 301 A 1 HETATM 5 C C11 SUY . . . B 2 -14.488 -3.333 -10.143 1 18.46 ? C11 SUY 301 A 1 HETATM 6 N N7 SUY . . . B 2 -13.359 -4.266 -12.783 1 20.15 ? N7 SUY 301 A 1 HETATM 7 C C6 SUY . . . B 2 -12.4 -4.809 -13.574 1 20.94 ? C6 SUY 301 A 1 HETATM 8 N N1 SUY . . . B 2 -12.471 -5.822 -14.457 1 21.21 ? N1 SUY 301 A 1 HETATM 9 C C5 SUY . . . B 2 -11.088 -4.134 -13.399 1 21.19 ? C5 SUY 301 A 1 HETATM 10 C C4 SUY . . . B 2 -9.916 -4.636 -14.192 1 22.42 ? C4 SUY 301 A 1 HETATM 11 N N13 SUY . . . B 2 -8.609 -4.113 -14.24 1 23.61 ? N13 SUY 301 A 1 HETATM 12 C C17 SUY . . . B 2 -7.554 -4.777 -15.006 1 24.89 ? C17 SUY 301 A 1 HETATM 13 C C16 SUY . . . B 2 -6.646 -3.609 -15.425 1 27.57 ? C16 SUY 301 A 1 HETATM 14 C C18 SUY . . . B 2 -7.393 -2.47 -16.114 1 28.12 ? C18 SUY 301 A 1 HETATM 15 N N19 SUY . . . B 2 -6.445 -1.582 -16.775 1 32.05 ? N19 SUY 301 A 1 HETATM 16 C C15 SUY . . . B 2 -7.093 -2.388 -14.622 1 27.4 ? C15 SUY 301 A 1 HETATM 17 C C14 SUY . . . B 2 -8.281 -2.783 -13.744 1 25.13 ? C14 SUY 301 A 1 HETATM 18 N N3 SUY . . . B 2 -10.175 -5.665 -15.025 1 21.67 ? N3 SUY 301 A 1 HETATM 19 C C2 SUY . . . B 2 -11.397 -6.241 -15.136 1 22.35 ? C2 SUY 301 A 1 HETATM 20 S S20 SUY . . . B 2 -11.632 -7.566 -16.143 1 22.67 ? S20 SUY 301 A 1 HETATM 21 C C21 SUY . . . B 2 -10.306 -7.869 -17.164 1 23.31 ? C21 SUY 301 A 1 HETATM 22 C C26 SUY . . . B 2 -9.875 -9.176 -17.362 1 24.08 ? C26 SUY 301 A 1 HETATM 23 N N25 SUY . . . B 2 -8.824 -9.408 -18.173 1 24.66 ? N25 SUY 301 A 1 HETATM 24 C C24 SUY . . . B 2 -8.199 -8.39 -18.801 1 23.18 ? C24 SUY 301 A 1 HETATM 25 N N23 SUY . . . B 2 -8.602 -7.119 -18.633 1 23.37 ? N23 SUY 301 A 1 HETATM 26 C C22 SUY . . . B 2 -9.642 -6.833 -17.83 1 23.75 ? C22 SUY 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #