data_4GFO # _model_server_result.job_id CQhAQNSBLFzWzXrWKLGo3Q _model_server_result.datetime_utc '2024-11-29 04:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 4GFO # _exptl.entry_id 4GFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GFO _cell.length_a 49.361 _cell.length_b 49.361 _cell.length_c 420.686 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 4GFO _atom_sites.fract_transf_matrix[1][1] 0.020259 _atom_sites.fract_transf_matrix[1][2] 0.011696 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 5 SO4 SO4 . C 2 SO4 A 1 1202 6 SO4 SO4 . D 3 EDO A 1 1203 96 EDO EDO . E 3 EDO A 1 1204 97 EDO EDO . F 4 GOL A 1 1205 101 GOL GOL . G 5 0X2 A 1 1206 1 0X2 0X2 . H 6 HOH A 1 1301 8 HOH HOH . H 6 HOH A 2 1302 9 HOH HOH . H 6 HOH A 3 1303 10 HOH HOH . H 6 HOH A 4 1304 11 HOH HOH . H 6 HOH A 5 1305 13 HOH HOH . H 6 HOH A 6 1306 14 HOH HOH . H 6 HOH A 7 1307 15 HOH HOH . H 6 HOH A 8 1308 16 HOH HOH . H 6 HOH A 9 1309 17 HOH HOH . H 6 HOH A 10 1310 18 HOH HOH . H 6 HOH A 11 1311 19 HOH HOH . H 6 HOH A 12 1312 20 HOH HOH . H 6 HOH A 13 1313 22 HOH HOH . H 6 HOH A 14 1314 23 HOH HOH . H 6 HOH A 15 1315 25 HOH HOH . H 6 HOH A 16 1316 26 HOH HOH . H 6 HOH A 17 1317 27 HOH HOH . H 6 HOH A 18 1318 28 HOH HOH . H 6 HOH A 19 1319 29 HOH HOH . H 6 HOH A 20 1320 30 HOH HOH . H 6 HOH A 21 1321 31 HOH HOH . H 6 HOH A 22 1322 32 HOH HOH . H 6 HOH A 23 1323 33 HOH HOH . H 6 HOH A 24 1324 34 HOH HOH . H 6 HOH A 25 1325 35 HOH HOH . H 6 HOH A 26 1326 36 HOH HOH . H 6 HOH A 27 1327 37 HOH HOH . H 6 HOH A 28 1328 38 HOH HOH . H 6 HOH A 29 1329 39 HOH HOH . H 6 HOH A 30 1330 40 HOH HOH . H 6 HOH A 31 1331 41 HOH HOH . H 6 HOH A 32 1332 43 HOH HOH . H 6 HOH A 33 1333 44 HOH HOH . H 6 HOH A 34 1334 45 HOH HOH . H 6 HOH A 35 1335 46 HOH HOH . H 6 HOH A 36 1336 47 HOH HOH . H 6 HOH A 37 1337 48 HOH HOH . H 6 HOH A 38 1338 49 HOH HOH . H 6 HOH A 39 1339 50 HOH HOH . H 6 HOH A 40 1340 51 HOH HOH . H 6 HOH A 41 1341 52 HOH HOH . H 6 HOH A 42 1342 53 HOH HOH . H 6 HOH A 43 1343 54 HOH HOH . H 6 HOH A 44 1344 55 HOH HOH . H 6 HOH A 45 1345 56 HOH HOH . H 6 HOH A 46 1346 58 HOH HOH . H 6 HOH A 47 1347 59 HOH HOH . H 6 HOH A 48 1348 61 HOH HOH . H 6 HOH A 49 1349 62 HOH HOH . H 6 HOH A 50 1350 63 HOH HOH . H 6 HOH A 51 1351 64 HOH HOH . H 6 HOH A 52 1352 65 HOH HOH . H 6 HOH A 53 1353 66 HOH HOH . H 6 HOH A 54 1354 67 HOH HOH . H 6 HOH A 55 1355 69 HOH HOH . H 6 HOH A 56 1356 71 HOH HOH . H 6 HOH A 57 1357 72 HOH HOH . H 6 HOH A 58 1358 73 HOH HOH . H 6 HOH A 59 1359 74 HOH HOH . H 6 HOH A 60 1360 75 HOH HOH . H 6 HOH A 61 1361 76 HOH HOH . H 6 HOH A 62 1362 78 HOH HOH . H 6 HOH A 63 1363 79 HOH HOH . H 6 HOH A 64 1364 80 HOH HOH . H 6 HOH A 65 1365 81 HOH HOH . H 6 HOH A 66 1366 82 HOH HOH . H 6 HOH A 67 1367 83 HOH HOH . H 6 HOH A 68 1368 84 HOH HOH . H 6 HOH A 69 1369 85 HOH HOH . H 6 HOH A 70 1370 86 HOH HOH . H 6 HOH A 71 1371 87 HOH HOH . H 6 HOH A 72 1372 88 HOH HOH . H 6 HOH A 73 1373 90 HOH HOH . H 6 HOH A 74 1374 91 HOH HOH . H 6 HOH A 75 1375 92 HOH HOH . H 6 HOH A 76 1376 93 HOH HOH . H 6 HOH A 77 1377 94 HOH HOH . H 6 HOH A 78 1378 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 9.594 -32.695 10.928 1 79.14 ? C1 GOL 1205 A 1 HETATM 2 O O1 GOL . . . F 4 9.163 -31.346 11.01 1 79 ? O1 GOL 1205 A 1 HETATM 3 C C2 GOL . . . F 4 9.567 -33.347 12.29 1 80.35 ? C2 GOL 1205 A 1 HETATM 4 O O2 GOL . . . F 4 10.429 -32.632 13.182 1 80.46 ? O2 GOL 1205 A 1 HETATM 5 C C3 GOL . . . F 4 10.025 -34.784 12.184 1 81.3 ? C3 GOL 1205 A 1 HETATM 6 O O3 GOL . . . F 4 9.949 -35.433 13.447 1 81.99 ? O3 GOL 1205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #