data_4GFP # _model_server_result.job_id ak2qNN5vVacP-BlMuABIjQ _model_server_result.datetime_utc '2024-11-10 01:31:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4GFP # _exptl.entry_id 4GFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GFP _cell.length_a 125.426 _cell.length_b 125.426 _cell.length_c 108.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 210 A CYS 186 1_555 A SG CYS 240 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A SG CYS 279 A CYS 255 1_555 C S2 BME . A BME 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 4GFP _atom_sites.fract_transf_matrix[1][1] 0.007973 _atom_sites.fract_transf_matrix[1][2] 0.004603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BME A 1 501 1 BME BME . C 2 BME A 1 502 1 BME BME . D 3 HOH A 1 601 1 HOH HOH . D 3 HOH A 2 602 2 HOH HOH . D 3 HOH A 3 603 3 HOH HOH . D 3 HOH A 4 604 4 HOH HOH . D 3 HOH A 5 605 5 HOH HOH . D 3 HOH A 6 606 6 HOH HOH . D 3 HOH A 7 607 9 HOH HOH . D 3 HOH A 8 608 10 HOH HOH . D 3 HOH A 9 609 11 HOH HOH . D 3 HOH A 10 610 12 HOH HOH . D 3 HOH A 11 611 13 HOH HOH . D 3 HOH A 12 612 16 HOH HOH . D 3 HOH A 13 613 17 HOH HOH . D 3 HOH A 14 614 18 HOH HOH . D 3 HOH A 15 615 19 HOH HOH . D 3 HOH A 16 616 20 HOH HOH . D 3 HOH A 17 617 21 HOH HOH . D 3 HOH A 18 618 22 HOH HOH . D 3 HOH A 19 619 23 HOH HOH . D 3 HOH A 20 620 24 HOH HOH . D 3 HOH A 21 621 25 HOH HOH . D 3 HOH A 22 622 26 HOH HOH . D 3 HOH A 23 623 27 HOH HOH . D 3 HOH A 24 624 28 HOH HOH . D 3 HOH A 25 625 29 HOH HOH . D 3 HOH A 26 626 30 HOH HOH . D 3 HOH A 27 627 32 HOH HOH . D 3 HOH A 28 628 36 HOH HOH . D 3 HOH A 29 629 37 HOH HOH . D 3 HOH A 30 630 39 HOH HOH . D 3 HOH A 31 631 40 HOH HOH . D 3 HOH A 32 632 41 HOH HOH . D 3 HOH A 33 633 43 HOH HOH . D 3 HOH A 34 634 44 HOH HOH . D 3 HOH A 35 635 45 HOH HOH . D 3 HOH A 36 636 47 HOH HOH . D 3 HOH A 37 637 48 HOH HOH . D 3 HOH A 38 638 49 HOH HOH . D 3 HOH A 39 639 50 HOH HOH . D 3 HOH A 40 640 51 HOH HOH . D 3 HOH A 41 641 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . C 2 -54.224 42.102 28.833 1 70.58 ? C1 BME 502 A 1 HETATM 2 C C2 BME . . . C 2 -53.636 40.807 29.38 1 67.9 ? C2 BME 502 A 1 HETATM 3 O O1 BME . . . C 2 -54.012 43.174 29.759 1 90.87 ? O1 BME 502 A 1 HETATM 4 S S2 BME . . . C 2 -51.943 40.588 28.759 1 80.02 ? S2 BME 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #