data_4GFS # _model_server_result.job_id QtLCsyHlYR1nQ8KipX4BTg _model_server_result.datetime_utc '2024-11-10 01:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4GFS # _exptl.entry_id 4GFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.17 _cell.angle_gamma 90 _cell.entry_id 4GFS _cell.length_a 48.679 _cell.length_b 74.468 _cell.length_c 63.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 137 A HIS 134 1_555 D NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A NE2 HIS 253 A HIS 250 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 C NI NI . A NI 301 1_555 J O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc4 D NI NI . A NI 302 1_555 J O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc5 D NI NI . A NI 302 1_555 J O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc6 D NI NI . A NI 302 1_555 J O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? metalc ? metalc7 B NE2 HIS 137 B HIS 134 1_555 H NI NI . B NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 B NE2 HIS 146 B HIS 143 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc9 B NE2 HIS 149 B HIS 146 1_555 F NI NI . B NI 302 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 B NZ LYS 173 B LYS 170 1_555 E NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 B NE2 HIS 253 B HIS 250 1_555 G NI NI . B NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc12 E NI NI . B NI 301 1_555 I O1 SIN . B SIN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc13 E NI NI . B NI 301 1_555 K O HOH . B HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc14 E NI NI . B NI 301 1_555 K O HOH . B HOH 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc15 E NI NI . B NI 301 1_555 K O HOH . B HOH 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc16 G NI NI . B NI 303 1_555 K O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc17 G NI NI . B NI 303 1_555 K O HOH . B HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc18 G NI NI . B NI 303 1_555 K O HOH . B HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc19 G NI NI . B NI 303 1_555 K O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc20 H NI NI . B NI 304 1_555 K O HOH . B HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc21 H NI NI . B NI 304 1_555 K O HOH . B HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc22 H NI NI . B NI 304 1_555 K O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc23 H NI NI . B NI 304 1_555 K O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc24 H NI NI . B NI 304 1_555 K O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GFS _atom_sites.fract_transf_matrix[1][1] 0.020543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003685 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 301 5 NI NI . D 2 NI A 1 302 6 NI NI . E 2 NI B 1 301 1 NI NI . F 2 NI B 1 302 2 NI NI . G 2 NI B 1 303 4 NI NI . H 2 NI B 1 304 1 NI NI . I 3 SIN B 1 305 1 SIN SIN . J 4 HOH A 1 401 5 HOH HOH . J 4 HOH A 2 402 10 HOH HOH . J 4 HOH A 3 403 14 HOH HOH . J 4 HOH A 4 404 16 HOH HOH . J 4 HOH A 5 405 18 HOH HOH . J 4 HOH A 6 406 19 HOH HOH . J 4 HOH A 7 407 24 HOH HOH . J 4 HOH A 8 408 26 HOH HOH . J 4 HOH A 9 409 34 HOH HOH . J 4 HOH A 10 410 35 HOH HOH . J 4 HOH A 11 411 38 HOH HOH . J 4 HOH A 12 412 39 HOH HOH . J 4 HOH A 13 413 40 HOH HOH . J 4 HOH A 14 414 42 HOH HOH . J 4 HOH A 15 415 45 HOH HOH . J 4 HOH A 16 416 49 HOH HOH . J 4 HOH A 17 417 51 HOH HOH . J 4 HOH A 18 418 55 HOH HOH . J 4 HOH A 19 419 59 HOH HOH . J 4 HOH A 20 420 62 HOH HOH . J 4 HOH A 21 421 64 HOH HOH . J 4 HOH A 22 422 74 HOH HOH . J 4 HOH A 23 423 83 HOH HOH . J 4 HOH A 24 424 92 HOH HOH . J 4 HOH A 25 425 96 HOH HOH . J 4 HOH A 26 426 98 HOH HOH . J 4 HOH A 27 427 107 HOH HOH . J 4 HOH A 28 428 122 HOH HOH . J 4 HOH A 29 429 128 HOH HOH . J 4 HOH A 30 430 134 HOH HOH . J 4 HOH A 31 431 135 HOH HOH . J 4 HOH A 32 432 142 HOH HOH . J 4 HOH A 33 433 143 HOH HOH . J 4 HOH A 34 434 150 HOH HOH . J 4 HOH A 35 435 152 HOH HOH . J 4 HOH A 36 436 154 HOH HOH . J 4 HOH A 37 437 157 HOH HOH . J 4 HOH A 38 438 158 HOH HOH . J 4 HOH A 39 439 161 HOH HOH . J 4 HOH A 40 440 177 HOH HOH . J 4 HOH A 41 441 197 HOH HOH . J 4 HOH A 42 442 199 HOH HOH . J 4 HOH A 43 443 204 HOH HOH . J 4 HOH A 44 444 206 HOH HOH . J 4 HOH A 45 445 208 HOH HOH . J 4 HOH A 46 446 212 HOH HOH . J 4 HOH A 47 447 218 HOH HOH . J 4 HOH A 48 448 224 HOH HOH . J 4 HOH A 49 449 238 HOH HOH . J 4 HOH A 50 450 264 HOH HOH . J 4 HOH A 51 451 265 HOH HOH . J 4 HOH A 52 452 271 HOH HOH . J 4 HOH A 53 453 272 HOH HOH . J 4 HOH A 54 454 274 HOH HOH . J 4 HOH A 55 455 275 HOH HOH . J 4 HOH A 56 456 276 HOH HOH . J 4 HOH A 57 457 277 HOH HOH . J 4 HOH A 58 458 282 HOH HOH . J 4 HOH A 59 459 284 HOH HOH . J 4 HOH A 60 460 286 HOH HOH . J 4 HOH A 61 461 287 HOH HOH . J 4 HOH A 62 462 292 HOH HOH . J 4 HOH A 63 463 293 HOH HOH . J 4 HOH A 64 464 294 HOH HOH . J 4 HOH A 65 465 295 HOH HOH . K 4 HOH B 1 401 2 HOH HOH . K 4 HOH B 2 402 3 HOH HOH . K 4 HOH B 3 403 4 HOH HOH . K 4 HOH B 4 404 6 HOH HOH . K 4 HOH B 5 405 7 HOH HOH . K 4 HOH B 6 406 9 HOH HOH . K 4 HOH B 7 407 15 HOH HOH . K 4 HOH B 8 408 17 HOH HOH . K 4 HOH B 9 409 20 HOH HOH . K 4 HOH B 10 410 21 HOH HOH . K 4 HOH B 11 411 22 HOH HOH . K 4 HOH B 12 412 23 HOH HOH . K 4 HOH B 13 413 25 HOH HOH . K 4 HOH B 14 414 28 HOH HOH . K 4 HOH B 15 415 30 HOH HOH . K 4 HOH B 16 416 33 HOH HOH . K 4 HOH B 17 417 36 HOH HOH . K 4 HOH B 18 418 37 HOH HOH . K 4 HOH B 19 419 43 HOH HOH . K 4 HOH B 20 420 46 HOH HOH . K 4 HOH B 21 421 47 HOH HOH . K 4 HOH B 22 422 48 HOH HOH . K 4 HOH B 23 423 54 HOH HOH . K 4 HOH B 24 424 56 HOH HOH . K 4 HOH B 25 425 57 HOH HOH . K 4 HOH B 26 426 58 HOH HOH . K 4 HOH B 27 427 63 HOH HOH . K 4 HOH B 28 428 66 HOH HOH . K 4 HOH B 29 429 67 HOH HOH . K 4 HOH B 30 430 69 HOH HOH . K 4 HOH B 31 431 71 HOH HOH . K 4 HOH B 32 432 73 HOH HOH . K 4 HOH B 33 433 75 HOH HOH . K 4 HOH B 34 434 76 HOH HOH . K 4 HOH B 35 435 77 HOH HOH . K 4 HOH B 36 436 78 HOH HOH . K 4 HOH B 37 437 79 HOH HOH . K 4 HOH B 38 438 80 HOH HOH . K 4 HOH B 39 439 84 HOH HOH . K 4 HOH B 40 440 85 HOH HOH . K 4 HOH B 41 441 86 HOH HOH . K 4 HOH B 42 442 88 HOH HOH . K 4 HOH B 43 443 89 HOH HOH . K 4 HOH B 44 444 91 HOH HOH . K 4 HOH B 45 445 93 HOH HOH . K 4 HOH B 46 446 94 HOH HOH . K 4 HOH B 47 447 97 HOH HOH . K 4 HOH B 48 448 99 HOH HOH . K 4 HOH B 49 449 100 HOH HOH . K 4 HOH B 50 450 102 HOH HOH . K 4 HOH B 51 451 103 HOH HOH . K 4 HOH B 52 452 104 HOH HOH . K 4 HOH B 53 453 108 HOH HOH . K 4 HOH B 54 454 111 HOH HOH . K 4 HOH B 55 455 114 HOH HOH . K 4 HOH B 56 456 115 HOH HOH . K 4 HOH B 57 457 117 HOH HOH . K 4 HOH B 58 458 118 HOH HOH . K 4 HOH B 59 459 120 HOH HOH . K 4 HOH B 60 460 121 HOH HOH . K 4 HOH B 61 461 123 HOH HOH . K 4 HOH B 62 462 127 HOH HOH . K 4 HOH B 63 463 133 HOH HOH . K 4 HOH B 64 464 137 HOH HOH . K 4 HOH B 65 465 138 HOH HOH . K 4 HOH B 66 466 140 HOH HOH . K 4 HOH B 67 467 141 HOH HOH . K 4 HOH B 68 468 145 HOH HOH . K 4 HOH B 69 469 146 HOH HOH . K 4 HOH B 70 470 147 HOH HOH . K 4 HOH B 71 471 149 HOH HOH . K 4 HOH B 72 472 153 HOH HOH . K 4 HOH B 73 473 155 HOH HOH . K 4 HOH B 74 474 159 HOH HOH . K 4 HOH B 75 475 162 HOH HOH . K 4 HOH B 76 476 163 HOH HOH . K 4 HOH B 77 477 166 HOH HOH . K 4 HOH B 78 478 167 HOH HOH . K 4 HOH B 79 479 168 HOH HOH . K 4 HOH B 80 480 169 HOH HOH . K 4 HOH B 81 481 170 HOH HOH . K 4 HOH B 82 482 176 HOH HOH . K 4 HOH B 83 483 179 HOH HOH . K 4 HOH B 84 484 181 HOH HOH . K 4 HOH B 85 485 184 HOH HOH . K 4 HOH B 86 486 185 HOH HOH . K 4 HOH B 87 487 190 HOH HOH . K 4 HOH B 88 488 194 HOH HOH . K 4 HOH B 89 489 200 HOH HOH . K 4 HOH B 90 490 209 HOH HOH . K 4 HOH B 91 491 210 HOH HOH . K 4 HOH B 92 492 217 HOH HOH . K 4 HOH B 93 493 222 HOH HOH . K 4 HOH B 94 494 237 HOH HOH . K 4 HOH B 95 495 241 HOH HOH . K 4 HOH B 96 496 242 HOH HOH . K 4 HOH B 97 497 244 HOH HOH . K 4 HOH B 98 498 245 HOH HOH . K 4 HOH B 99 499 246 HOH HOH . K 4 HOH B 100 500 247 HOH HOH . K 4 HOH B 101 501 248 HOH HOH . K 4 HOH B 102 502 249 HOH HOH . K 4 HOH B 103 503 250 HOH HOH . K 4 HOH B 104 504 254 HOH HOH . K 4 HOH B 105 505 255 HOH HOH . K 4 HOH B 106 506 256 HOH HOH . K 4 HOH B 107 507 257 HOH HOH . K 4 HOH B 108 508 258 HOH HOH . K 4 HOH B 109 509 259 HOH HOH . K 4 HOH B 110 510 260 HOH HOH . K 4 HOH B 111 511 261 HOH HOH . K 4 HOH B 112 512 266 HOH HOH . K 4 HOH B 113 513 269 HOH HOH . K 4 HOH B 114 514 273 HOH HOH . K 4 HOH B 115 515 278 HOH HOH . K 4 HOH B 116 516 279 HOH HOH . K 4 HOH B 117 517 280 HOH HOH . K 4 HOH B 118 518 281 HOH HOH . K 4 HOH B 119 519 283 HOH HOH . K 4 HOH B 120 520 285 HOH HOH . K 4 HOH B 121 521 288 HOH HOH . K 4 HOH B 122 522 289 HOH HOH . K 4 HOH B 123 523 290 HOH HOH . K 4 HOH B 124 524 291 HOH HOH . K 4 HOH B 125 525 296 HOH HOH . K 4 HOH B 126 526 297 HOH HOH . K 4 HOH B 127 527 298 HOH HOH . K 4 HOH B 128 528 299 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 22.862 _atom_site.Cartn_y 14.106 _atom_site.Cartn_z 11.51 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 48.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #