data_4GFX # _model_server_result.job_id 2fVnqq43Pq_4kyt4fEb85Q _model_server_result.datetime_utc '2024-11-23 07:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4GFX # _exptl.entry_id 4GFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GFX _cell.length_a 37.431 _cell.length_b 56.621 _cell.length_c 67.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 60 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 63 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 117 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 120 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4GFX _atom_sites.fract_transf_matrix[1][1] 0.026716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 801 801 GOL GOL . C 3 HOH A 1 901 1 HOH HOH . C 3 HOH A 2 902 2 HOH HOH . C 3 HOH A 3 903 3 HOH HOH . C 3 HOH A 4 904 4 HOH HOH . C 3 HOH A 5 905 5 HOH HOH . C 3 HOH A 6 906 6 HOH HOH . C 3 HOH A 7 907 7 HOH HOH . C 3 HOH A 8 908 8 HOH HOH . C 3 HOH A 9 909 9 HOH HOH . C 3 HOH A 10 910 10 HOH HOH . C 3 HOH A 11 911 11 HOH HOH . C 3 HOH A 12 912 12 HOH HOH . C 3 HOH A 13 913 13 HOH HOH . C 3 HOH A 14 914 14 HOH HOH . C 3 HOH A 15 915 15 HOH HOH . C 3 HOH A 16 916 16 HOH HOH . C 3 HOH A 17 917 17 HOH HOH . C 3 HOH A 18 918 18 HOH HOH . C 3 HOH A 19 919 19 HOH HOH . C 3 HOH A 20 920 20 HOH HOH . C 3 HOH A 21 921 21 HOH HOH . C 3 HOH A 22 922 22 HOH HOH . C 3 HOH A 23 923 23 HOH HOH . C 3 HOH A 24 924 24 HOH HOH . C 3 HOH A 25 925 25 HOH HOH . C 3 HOH A 26 926 26 HOH HOH . C 3 HOH A 27 927 27 HOH HOH . C 3 HOH A 28 928 28 HOH HOH . C 3 HOH A 29 929 29 HOH HOH . C 3 HOH A 30 930 30 HOH HOH . C 3 HOH A 31 931 31 HOH HOH . C 3 HOH A 32 932 32 HOH HOH . C 3 HOH A 33 933 33 HOH HOH . C 3 HOH A 34 934 34 HOH HOH . C 3 HOH A 35 935 35 HOH HOH . C 3 HOH A 36 936 36 HOH HOH . C 3 HOH A 37 937 37 HOH HOH . C 3 HOH A 38 938 38 HOH HOH . C 3 HOH A 39 939 39 HOH HOH . C 3 HOH A 40 940 40 HOH HOH . C 3 HOH A 41 941 41 HOH HOH . C 3 HOH A 42 942 42 HOH HOH . C 3 HOH A 43 943 43 HOH HOH . C 3 HOH A 44 944 44 HOH HOH . C 3 HOH A 45 945 45 HOH HOH . C 3 HOH A 46 946 46 HOH HOH . C 3 HOH A 47 947 47 HOH HOH . C 3 HOH A 48 948 48 HOH HOH . C 3 HOH A 49 949 49 HOH HOH . C 3 HOH A 50 950 50 HOH HOH . C 3 HOH A 51 951 51 HOH HOH . C 3 HOH A 52 952 52 HOH HOH . C 3 HOH A 53 953 53 HOH HOH . C 3 HOH A 54 954 54 HOH HOH . C 3 HOH A 55 955 55 HOH HOH . C 3 HOH A 56 956 56 HOH HOH . C 3 HOH A 57 957 57 HOH HOH . C 3 HOH A 58 958 58 HOH HOH . C 3 HOH A 59 959 59 HOH HOH . C 3 HOH A 60 960 60 HOH HOH . C 3 HOH A 61 961 61 HOH HOH . C 3 HOH A 62 962 62 HOH HOH . C 3 HOH A 63 963 63 HOH HOH . C 3 HOH A 64 964 64 HOH HOH . C 3 HOH A 65 965 65 HOH HOH . C 3 HOH A 66 966 66 HOH HOH . C 3 HOH A 67 967 67 HOH HOH . C 3 HOH A 68 968 68 HOH HOH . C 3 HOH A 69 969 69 HOH HOH . C 3 HOH A 70 970 70 HOH HOH . C 3 HOH A 71 971 71 HOH HOH . C 3 HOH A 72 972 72 HOH HOH . C 3 HOH A 73 973 73 HOH HOH . C 3 HOH A 74 974 74 HOH HOH . C 3 HOH A 75 975 75 HOH HOH . C 3 HOH A 76 976 76 HOH HOH . C 3 HOH A 77 977 77 HOH HOH . C 3 HOH A 78 978 78 HOH HOH . C 3 HOH A 79 979 79 HOH HOH . C 3 HOH A 80 980 80 HOH HOH . C 3 HOH A 81 981 81 HOH HOH . C 3 HOH A 82 982 82 HOH HOH . C 3 HOH A 83 983 83 HOH HOH . C 3 HOH A 84 984 84 HOH HOH . C 3 HOH A 85 985 85 HOH HOH . C 3 HOH A 86 986 86 HOH HOH . C 3 HOH A 87 987 87 HOH HOH . C 3 HOH A 88 988 88 HOH HOH . C 3 HOH A 89 989 89 HOH HOH . C 3 HOH A 90 990 90 HOH HOH . C 3 HOH A 91 991 91 HOH HOH . C 3 HOH A 92 992 92 HOH HOH . C 3 HOH A 93 993 93 HOH HOH . C 3 HOH A 94 994 94 HOH HOH . C 3 HOH A 95 995 95 HOH HOH . C 3 HOH A 96 996 96 HOH HOH . C 3 HOH A 97 997 97 HOH HOH . C 3 HOH A 98 998 98 HOH HOH . C 3 HOH A 99 999 99 HOH HOH . C 3 HOH A 100 1000 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.534 -3.278 -10.233 1 38.42 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . B 2 -3.628 -2.665 -9.338 1 39.09 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . B 2 -4.757 -2.391 -11.453 1 41.03 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . B 2 -5.084 -1.082 -11.035 1 35.83 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . B 2 -3.492 -2.313 -12.299 1 36.94 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . B 2 -3.025 -3.577 -12.71 1 44.54 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #