data_4GH6 # _model_server_result.job_id NyZbncUx2zGpI5ql9yeh0g _model_server_result.datetime_utc '2024-11-25 16:03:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4GH6 # _exptl.entry_id 4GH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.448 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-methoxyphenyl)-N~2~-[1-(2-methylphenyl)-4-oxo-4,5-dihydro-1H-pyrazolo[3,4-d]pyrimidin-6-yl]-L-alaninamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GH6 _cell.length_a 104.276 _cell.length_b 104.276 _cell.length_c 270.073 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 76 A HIS 256 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 A NE2 HIS 112 A HIS 292 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 A OD2 ASP 113 A ASP 293 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A OD1 ASP 113 A ASP 293 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc5 A OD1 ASP 222 A ASP 402 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 D ZN ZN . A ZN 602 1_555 J O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc7 D ZN ZN . A ZN 602 1_555 J O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc8 E MG MG . A MG 603 1_555 J O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc9 E MG MG . A MG 603 1_555 J O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc10 E MG MG . A MG 603 1_555 J O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 E MG MG . A MG 603 1_555 J O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc12 E MG MG . A MG 603 1_555 J O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc13 B NE2 HIS 76 B HIS 256 1_555 H ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc14 B NE2 HIS 112 B HIS 292 1_555 H ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 B OD2 ASP 113 B ASP 293 1_555 H ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc16 B OD1 ASP 113 B ASP 293 1_555 I MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc17 B OD1 ASP 222 B ASP 402 1_555 H ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc18 H ZN ZN . B ZN 603 1_555 K O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc19 H ZN ZN . B ZN 603 1_555 K O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc20 I MG MG . B MG 604 1_555 K O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc21 I MG MG . B MG 604 1_555 K O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc22 I MG MG . B MG 604 1_555 K O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc23 I MG MG . B MG 604 1_555 K O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc24 I MG MG . B MG 604 1_555 K O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'C22 H22 N6 O3' _chem_comp.formula_weight 418.448 _chem_comp.id LUO _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-methoxyphenyl)-N~2~-[1-(2-methylphenyl)-4-oxo-4,5-dihydro-1H-pyrazolo[3,4-d]pyrimidin-6-yl]-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O30 LUO sing 194 n n O30 C27 LUO sing 195 n n C27 C26 LUO doub 196 n y C27 C28 LUO sing 197 n y C26 C25 LUO sing 198 n y C28 C29 LUO doub 199 n y C25 C24 LUO doub 200 n y C29 C24 LUO sing 201 n y C24 N23 LUO sing 202 n n C4 C3 LUO doub 203 n y C4 C5 LUO sing 204 n y C3 C2 LUO sing 205 n y O22 C21 LUO doub 206 n n N23 C21 LUO sing 207 n n C21 C19 LUO sing 208 n n C5 C6 LUO doub 209 n y C20 C19 LUO sing 210 n n C2 CL1 LUO sing 211 n n C2 C7 LUO doub 212 n y C19 N18 LUO sing 213 n n C6 C7 LUO sing 214 n y C7 N8 LUO sing 215 n n N18 C14 LUO sing 216 n n N13 C14 LUO doub 217 n n N13 C11 LUO sing 218 n n C14 N15 LUO sing 219 n n N8 C11 LUO sing 220 n y N8 N9 LUO sing 221 n y C11 C12 LUO doub 222 n y N9 C10 LUO doub 223 n y N15 C16 LUO sing 224 n n C12 C16 LUO sing 225 n n C12 C10 LUO sing 226 n y C16 O17 LUO doub 227 n n CL1 H1 LUO sing 228 n n CL1 H2 LUO sing 229 n n CL1 H3 LUO sing 230 n n C3 H4 LUO sing 231 n n C4 H5 LUO sing 232 n n C5 H6 LUO sing 233 n n C6 H7 LUO sing 234 n n C10 H8 LUO sing 235 n n N15 H9 LUO sing 236 n n N18 H10 LUO sing 237 n n C19 H11 LUO sing 238 n n C20 H12 LUO sing 239 n n C20 H13 LUO sing 240 n n C20 H14 LUO sing 241 n n N23 H15 LUO sing 242 n n C29 H16 LUO sing 243 n n C28 H17 LUO sing 244 n n C31 H18 LUO sing 245 n n C31 H19 LUO sing 246 n n C31 H20 LUO sing 247 n n C26 H21 LUO sing 248 n n C25 H22 LUO sing 249 n n # _atom_sites.entry_id 4GH6 _atom_sites.fract_transf_matrix[1][1] 0.00959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LUO A 1 601 1 LUO LUO . D 3 ZN A 1 602 101 ZN ZN . E 4 MG A 1 603 102 MG MG . F 2 LUO B 1 601 1 LUO LUO . G 2 LUO B 1 602 1 LUO LUO . H 3 ZN B 1 603 101 ZN ZN . I 4 MG B 1 604 102 MG MG . J 5 HOH A 1 701 1 HOH TIP . J 5 HOH A 2 702 2 HOH TIP . J 5 HOH A 3 703 3 HOH TIP . J 5 HOH A 4 704 4 HOH TIP . J 5 HOH A 5 705 5 HOH TIP . J 5 HOH A 6 706 6 HOH TIP . J 5 HOH A 7 707 7 HOH TIP . J 5 HOH A 8 708 8 HOH TIP . J 5 HOH A 9 709 9 HOH TIP . J 5 HOH A 10 710 10 HOH TIP . K 5 HOH B 1 701 11 HOH TIP . K 5 HOH B 2 702 12 HOH TIP . K 5 HOH B 3 703 13 HOH TIP . K 5 HOH B 4 704 14 HOH TIP . K 5 HOH B 5 705 15 HOH TIP . K 5 HOH B 6 706 16 HOH TIP . K 5 HOH B 7 707 17 HOH TIP . K 5 HOH B 8 708 18 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CL1 LUO . . . C 2 77.971 49.716 40.173 1 37.66 ? CL1 LUO 601 A 1 HETATM 2 C C2 LUO . . . C 2 79.239 50.206 39.888 1 37.72 ? C2 LUO 601 A 1 HETATM 3 C C3 LUO . . . C 2 79.797 49.992 38.633 1 37.41 ? C3 LUO 601 A 1 HETATM 4 C C4 LUO . . . C 2 81.066 50.48 38.344 1 37.22 ? C4 LUO 601 A 1 HETATM 5 C C5 LUO . . . C 2 81.776 51.179 39.314 1 40.43 ? C5 LUO 601 A 1 HETATM 6 C C6 LUO . . . C 2 81.215 51.402 40.566 1 40.19 ? C6 LUO 601 A 1 HETATM 7 C C7 LUO . . . C 2 79.945 50.916 40.853 1 38.98 ? C7 LUO 601 A 1 HETATM 8 N N8 LUO . . . C 2 79.399 51.129 42.048 1 43.02 ? N8 LUO 601 A 1 HETATM 9 C C11 LUO . . . C 2 78.322 51.89 42.219 1 44.39 ? C11 LUO 601 A 1 HETATM 10 N N13 LUO . . . C 2 77.546 52.564 41.361 1 45.07 ? N13 LUO 601 A 1 HETATM 11 N N9 LUO . . . C 2 79.768 50.729 43.045 1 41.87 ? N9 LUO 601 A 1 HETATM 12 C C10 LUO . . . C 2 79.011 51.151 44.058 1 42.12 ? C10 LUO 601 A 1 HETATM 13 C C12 LUO . . . C 2 78.06 51.907 43.519 1 44.06 ? C12 LUO 601 A 1 HETATM 14 C C16 LUO . . . C 2 77.014 52.592 43.972 1 42.97 ? C16 LUO 601 A 1 HETATM 15 O O17 LUO . . . C 2 76.827 52.613 45.319 1 39.58 ? O17 LUO 601 A 1 HETATM 16 N N15 LUO . . . C 2 76.224 53.27 43.127 1 44.82 ? N15 LUO 601 A 1 HETATM 17 C C14 LUO . . . C 2 76.5 53.269 41.814 1 46.84 ? C14 LUO 601 A 1 HETATM 18 N N18 LUO . . . C 2 75.839 54.101 40.964 1 50.01 ? N18 LUO 601 A 1 HETATM 19 C C19 LUO . . . C 2 74.814 53.42 40.215 1 50.15 ? C19 LUO 601 A 1 HETATM 20 C C20 LUO . . . C 2 73.986 54.464 39.464 1 51.19 ? C20 LUO 601 A 1 HETATM 21 C C21 LUO . . . C 2 75.415 52.434 39.21 1 52.77 ? C21 LUO 601 A 1 HETATM 22 O O22 LUO . . . C 2 76.477 52.674 38.638 1 52.82 ? O22 LUO 601 A 1 HETATM 23 N N23 LUO . . . C 2 74.627 51.257 39.014 1 55.96 ? N23 LUO 601 A 1 HETATM 24 C C24 LUO . . . C 2 75.032 50.463 37.983 1 57.49 ? C24 LUO 601 A 1 HETATM 25 C C29 LUO . . . C 2 74.368 49.255 37.798 1 57.67 ? C29 LUO 601 A 1 HETATM 26 C C28 LUO . . . C 2 74.726 48.394 36.767 1 58.29 ? C28 LUO 601 A 1 HETATM 27 C C27 LUO . . . C 2 75.76 48.743 35.906 1 59.26 ? C27 LUO 601 A 1 HETATM 28 O O30 LUO . . . C 2 76.115 47.883 34.913 1 61.57 ? O30 LUO 601 A 1 HETATM 29 C C31 LUO . . . C 2 75.732 48.399 33.635 1 62.88 ? C31 LUO 601 A 1 HETATM 30 C C26 LUO . . . C 2 76.428 49.95 36.085 1 57.68 ? C26 LUO 601 A 1 HETATM 31 C C25 LUO . . . C 2 76.066 50.809 37.119 1 55.03 ? C25 LUO 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #