data_4GHP # _model_server_result.job_id qEE430JFOwIg6LgmhyZuCQ _model_server_result.datetime_utc '2024-11-14 17:36:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ghp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GHP # _exptl.entry_id 4GHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 723.998 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.58 _cell.angle_gamma 90 _cell.entry_id 4GHP _cell.length_a 76.331 _cell.length_b 49.118 _cell.length_c 68.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 38.653775 0 56.75175 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H69 N O11 S' _chem_comp.formula_weight 723.998 _chem_comp.id EIS _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 EIS sing 83 n n C28 C27 EIS sing 84 n n C27 C26 EIS sing 85 n n C25 C26 EIS sing 86 n n C25 C24 EIS sing 87 n n C24 C23 EIS sing 88 n n C23 C22 EIS sing 89 n n C22 C21 EIS sing 90 n n C21 C20 EIS sing 91 n n C20 C19 EIS sing 92 n n O2 C18 EIS doub 93 n n C19 C18 EIS sing 94 n n C18 N EIS sing 95 n n C9 C8 EIS sing 96 n n C9 C10 EIS sing 97 n n N C1 EIS sing 98 n n C12 C11 EIS sing 99 n n C12 C13 EIS sing 100 n n C11 C10 EIS sing 101 n n C7 C8 EIS sing 102 n n C7 C6 EIS sing 103 n n C3 C4 EIS doub 104 e n C3 C2 EIS sing 105 n n C14 C13 EIS sing 106 n n C14 C15 EIS sing 107 n n C5 C4 EIS sing 108 n n C5 C6 EIS sing 109 n n C1 C2 EIS sing 110 n n C1 C EIS sing 111 n n C16 C15 EIS sing 112 n n C16 C17 EIS sing 113 n n C2 O1 EIS sing 114 n n C O EIS sing 115 n n O C43 EIS sing 116 n n C43 O6 EIS sing 117 n n C43 C44 EIS sing 118 n n O3 C44 EIS sing 119 n n O6 C47 EIS sing 120 n n C44 C45 EIS sing 121 n n C47 C48 EIS sing 122 n n C47 C46 EIS sing 123 n n O7 C48 EIS sing 124 n n C45 C46 EIS sing 125 n n C45 O4 EIS sing 126 n n C46 O5 EIS sing 127 n n O4 S EIS sing 128 n n O8 S EIS doub 129 n n S O9 EIS doub 130 n n S O10 EIS sing 131 n n C43 H1 EIS sing 132 n n C44 H2 EIS sing 133 n n O3 H3 EIS sing 134 n n C45 H4 EIS sing 135 n n C46 H5 EIS sing 136 n n O5 H6 EIS sing 137 n n C47 H7 EIS sing 138 n n C48 H8 EIS sing 139 n n C48 H9 EIS sing 140 n n O7 H10 EIS sing 141 n n O1 H11 EIS sing 142 n n C2 H12 EIS sing 143 n n C1 H13 EIS sing 144 n n N H14 EIS sing 145 n n C H15 EIS sing 146 n n C H16 EIS sing 147 n n C3 H17 EIS sing 148 n n C4 H20 EIS sing 149 n n C5 H21 EIS sing 150 n n C5 H22 EIS sing 151 n n C6 H23 EIS sing 152 n n C6 H24 EIS sing 153 n n C7 H25 EIS sing 154 n n C7 H26 EIS sing 155 n n C8 H27 EIS sing 156 n n C8 H28 EIS sing 157 n n C9 H29 EIS sing 158 n n C9 H30 EIS sing 159 n n C10 H31 EIS sing 160 n n C10 H32 EIS sing 161 n n C11 H33 EIS sing 162 n n C11 H34 EIS sing 163 n n C12 H35 EIS sing 164 n n C12 H36 EIS sing 165 n n C13 H37 EIS sing 166 n n C13 H38 EIS sing 167 n n C14 H39 EIS sing 168 n n C14 H40 EIS sing 169 n n C15 H41 EIS sing 170 n n C15 H42 EIS sing 171 n n C16 H43 EIS sing 172 n n C16 H44 EIS sing 173 n n C17 H45 EIS sing 174 n n C17 H46 EIS sing 175 n n C17 H47 EIS sing 176 n n C29 H48 EIS sing 177 n n C29 H49 EIS sing 178 n n C29 H50 EIS sing 179 n n C28 H51 EIS sing 180 n n C28 H52 EIS sing 181 n n C27 H53 EIS sing 182 n n C27 H54 EIS sing 183 n n C26 H55 EIS sing 184 n n C26 H56 EIS sing 185 n n C25 H57 EIS sing 186 n n C25 H58 EIS sing 187 n n C24 H59 EIS sing 188 n n C24 H60 EIS sing 189 n n C23 H61 EIS sing 190 n n C23 H62 EIS sing 191 n n C22 H63 EIS sing 192 n n C22 H64 EIS sing 193 n n C21 H65 EIS sing 194 n n C21 H66 EIS sing 195 n n C20 H67 EIS sing 196 n n C20 H68 EIS sing 197 n n C19 H69 EIS sing 198 n n C19 H70 EIS sing 199 n n O10 H18 EIS sing 200 n n # _atom_sites.entry_id 4GHP _atom_sites.fract_transf_matrix[1][1] 0.013101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EIS A 1 301 1 EIS CIS . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 31 HOH HOH . C 3 HOH A 31 431 32 HOH HOH . C 3 HOH A 32 432 34 HOH HOH . C 3 HOH A 33 433 35 HOH HOH . C 3 HOH A 34 434 36 HOH HOH . C 3 HOH A 35 435 37 HOH HOH . C 3 HOH A 36 436 40 HOH HOH . C 3 HOH A 37 437 41 HOH HOH . C 3 HOH A 38 438 42 HOH HOH . C 3 HOH A 39 439 44 HOH HOH . C 3 HOH A 40 440 45 HOH HOH . C 3 HOH A 41 441 46 HOH HOH . C 3 HOH A 42 442 47 HOH HOH . C 3 HOH A 43 443 48 HOH HOH . C 3 HOH A 44 444 49 HOH HOH . C 3 HOH A 45 445 50 HOH HOH . C 3 HOH A 46 446 51 HOH HOH . C 3 HOH A 47 447 52 HOH HOH . C 3 HOH A 48 448 53 HOH HOH . C 3 HOH A 49 449 54 HOH HOH . C 3 HOH A 50 450 55 HOH HOH . C 3 HOH A 51 451 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C43 EIS . . . B 2 23.163 0.409 18.032 1 45.06 ? C43 EIS 301 A 1 HETATM 2 O O EIS . . . B 2 22.529 -0.605 18.792 1 45.37 ? O EIS 301 A 1 HETATM 3 C C44 EIS . . . B 2 22.903 1.717 18.752 1 46.16 ? C44 EIS 301 A 1 HETATM 4 O O3 EIS . . . B 2 21.467 1.895 18.975 1 45.58 ? O3 EIS 301 A 1 HETATM 5 C C45 EIS . . . B 2 23.528 2.805 17.861 1 46.16 ? C45 EIS 301 A 1 HETATM 6 C C46 EIS . . . B 2 25.04 2.573 17.662 1 43.99 ? C46 EIS 301 A 1 HETATM 7 O O5 EIS . . . B 2 25.702 2.66 18.945 1 46.01 ? O5 EIS 301 A 1 HETATM 8 C C47 EIS . . . B 2 25.247 1.163 17.145 1 45.27 ? C47 EIS 301 A 1 HETATM 9 C C48 EIS . . . B 2 26.739 0.848 17.144 1 45.87 ? C48 EIS 301 A 1 HETATM 10 O O7 EIS . . . B 2 26.936 -0.418 16.514 1 45.66 ? O7 EIS 301 A 1 HETATM 11 O O6 EIS . . . B 2 24.588 0.198 17.958 1 43.45 ? O6 EIS 301 A 1 HETATM 12 O O1 EIS . . . B 2 23.189 -3.069 20.801 1 46.88 ? O1 EIS 301 A 1 HETATM 13 C C2 EIS . . . B 2 21.816 -2.88 20.425 1 48.7 ? C2 EIS 301 A 1 HETATM 14 C C1 EIS . . . B 2 21.704 -2.886 18.903 1 46.93 ? C1 EIS 301 A 1 HETATM 15 N N EIS . . . B 2 20.36 -2.391 18.565 1 47.9 ? N EIS 301 A 1 HETATM 16 C C EIS . . . B 2 22.67 -1.934 18.236 1 46.6 ? C EIS 301 A 1 HETATM 17 C C3 EIS . . . B 2 21.07 -3.954 21.189 1 49.61 ? C3 EIS 301 A 1 HETATM 18 C C4 EIS . . . B 2 20.085 -3.648 22.035 1 51.76 ? C4 EIS 301 A 1 HETATM 19 C C5 EIS . . . B 2 19.372 -4.701 22.85 1 52.91 ? C5 EIS 301 A 1 HETATM 20 C C6 EIS . . . B 2 20.055 -4.791 24.233 1 55.12 ? C6 EIS 301 A 1 HETATM 21 C C7 EIS . . . B 2 20.665 -6.17 24.471 1 54.18 ? C7 EIS 301 A 1 HETATM 22 C C8 EIS . . . B 2 21.642 -6.28 25.622 1 53.47 ? C8 EIS 301 A 1 HETATM 23 C C9 EIS . . . B 2 20.942 -6.451 26.954 1 53.35 ? C9 EIS 301 A 1 HETATM 24 C C10 EIS . . . B 2 21.977 -6.417 28.054 1 54.45 ? C10 EIS 301 A 1 HETATM 25 C C11 EIS . . . B 2 21.42 -6.903 29.369 1 54.9 ? C11 EIS 301 A 1 HETATM 26 C C12 EIS . . . B 2 22.472 -6.98 30.456 1 54 ? C12 EIS 301 A 1 HETATM 27 C C13 EIS . . . B 2 21.773 -7.182 31.804 1 54.29 ? C13 EIS 301 A 1 HETATM 28 C C14 EIS . . . B 2 22.526 -7.954 32.895 1 49.92 ? C14 EIS 301 A 1 HETATM 29 C C15 EIS . . . B 2 21.535 -8.442 33.947 1 50.02 ? C15 EIS 301 A 1 HETATM 30 C C16 EIS . . . B 2 21.752 -7.908 35.343 1 48.65 ? C16 EIS 301 A 1 HETATM 31 C C29 EIS . . . B 2 10.434 -9.362 23.079 1 59.76 ? C29 EIS 301 A 1 HETATM 32 C C28 EIS . . . B 2 11.137 -8.011 23.142 1 60.6 ? C28 EIS 301 A 1 HETATM 33 C C27 EIS . . . B 2 11.672 -7.601 21.776 1 59.03 ? C27 EIS 301 A 1 HETATM 34 C C26 EIS . . . B 2 11.571 -6.101 21.486 1 58.68 ? C26 EIS 301 A 1 HETATM 35 C C25 EIS . . . B 2 12.515 -5.713 20.349 1 56.81 ? C25 EIS 301 A 1 HETATM 36 C C24 EIS . . . B 2 12.275 -4.254 19.935 1 57.04 ? C24 EIS 301 A 1 HETATM 37 C C23 EIS . . . B 2 13.247 -3.766 18.867 1 54.9 ? C23 EIS 301 A 1 HETATM 38 C C22 EIS . . . B 2 14.67 -3.848 19.414 1 55.11 ? C22 EIS 301 A 1 HETATM 39 C C21 EIS . . . B 2 15.635 -3.001 18.588 1 52.66 ? C21 EIS 301 A 1 HETATM 40 C C20 EIS . . . B 2 17.073 -3.272 19.012 1 50.43 ? C20 EIS 301 A 1 HETATM 41 C C19 EIS . . . B 2 18.017 -2.719 17.949 1 50.33 ? C19 EIS 301 A 1 HETATM 42 C C18 EIS . . . B 2 19.39 -3.248 18.266 1 48.77 ? C18 EIS 301 A 1 HETATM 43 O O2 EIS . . . B 2 19.562 -4.455 18.262 1 49.75 ? O2 EIS 301 A 1 HETATM 44 S S EIS . . . B 2 23.166 5.382 17.744 1 51.01 ? S EIS 301 A 1 HETATM 45 O O4 EIS . . . B 2 23.365 3.997 18.571 1 47.99 ? O4 EIS 301 A 1 HETATM 46 O O10 EIS . . . B 2 23.851 6.358 18.504 1 58.26 ? O10 EIS 301 A 1 HETATM 47 O O9 EIS . . . B 2 21.812 5.849 17.704 1 55.73 ? O9 EIS 301 A 1 HETATM 48 O O8 EIS . . . B 2 23.693 5.258 16.381 1 47.78 ? O8 EIS 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #