data_4GI0 # _model_server_result.job_id JISJvGAPuRS9nyruxlh-0Q _model_server_result.datetime_utc '2024-11-04 23:17:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4GI0 # _exptl.entry_id 4GI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GI0 _cell.length_a 63.32 _cell.length_b 63.32 _cell.length_c 261.42 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 160 1_555 A SG CYS 133 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 8 A CYS 163 1_555 A SG CYS 19 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 36 A CYS 191 1_555 A SG CYS 127 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 104 A CYS 259 1_555 A SG CYS 118 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 B SG CYS 5 B CYS 160 1_555 B SG CYS 133 B CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 8 B CYS 163 1_555 B SG CYS 19 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 36 B CYS 191 1_555 B SG CYS 127 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 B SG CYS 104 B CYS 259 1_555 B SG CYS 118 B CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf9 C SG CYS 5 C CYS 160 1_555 C SG CYS 133 C CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 C SG CYS 8 C CYS 163 1_555 C SG CYS 19 C CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf11 C SG CYS 36 C CYS 191 1_555 C SG CYS 127 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 C SG CYS 104 C CYS 259 1_555 C SG CYS 118 C CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4GI0 _atom_sites.fract_transf_matrix[1][1] 0.015793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 301 1 GOL GOL . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 5 HOH HOH . E 3 HOH A 3 403 6 HOH HOH . E 3 HOH A 4 404 8 HOH HOH . E 3 HOH A 5 405 12 HOH HOH . E 3 HOH A 6 406 13 HOH HOH . E 3 HOH A 7 407 14 HOH HOH . E 3 HOH A 8 408 17 HOH HOH . E 3 HOH A 9 409 19 HOH HOH . E 3 HOH A 10 410 20 HOH HOH . E 3 HOH A 11 411 22 HOH HOH . E 3 HOH A 12 412 25 HOH HOH . E 3 HOH A 13 413 31 HOH HOH . E 3 HOH A 14 414 32 HOH HOH . E 3 HOH A 15 415 33 HOH HOH . E 3 HOH A 16 416 34 HOH HOH . E 3 HOH A 17 417 38 HOH HOH . E 3 HOH A 18 418 45 HOH HOH . E 3 HOH A 19 419 47 HOH HOH . E 3 HOH A 20 420 48 HOH HOH . E 3 HOH A 21 421 54 HOH HOH . E 3 HOH A 22 422 59 HOH HOH . E 3 HOH A 23 423 60 HOH HOH . E 3 HOH A 24 424 62 HOH HOH . E 3 HOH A 25 425 63 HOH HOH . E 3 HOH A 26 426 66 HOH HOH . E 3 HOH A 27 427 67 HOH HOH . E 3 HOH A 28 428 68 HOH HOH . E 3 HOH A 29 429 69 HOH HOH . E 3 HOH A 30 430 70 HOH HOH . E 3 HOH A 31 431 73 HOH HOH . E 3 HOH A 32 432 82 HOH HOH . E 3 HOH A 33 433 84 HOH HOH . E 3 HOH A 34 434 85 HOH HOH . E 3 HOH A 35 435 86 HOH HOH . E 3 HOH A 36 436 87 HOH HOH . E 3 HOH A 37 437 88 HOH HOH . E 3 HOH A 38 438 89 HOH HOH . E 3 HOH A 39 439 92 HOH HOH . E 3 HOH A 40 440 93 HOH HOH . E 3 HOH A 41 441 95 HOH HOH . E 3 HOH A 42 442 105 HOH HOH . E 3 HOH A 43 443 110 HOH HOH . E 3 HOH A 44 444 111 HOH HOH . E 3 HOH A 45 445 113 HOH HOH . E 3 HOH A 46 446 115 HOH HOH . E 3 HOH A 47 447 125 HOH HOH . E 3 HOH A 48 448 127 HOH HOH . E 3 HOH A 49 449 128 HOH HOH . E 3 HOH A 50 450 129 HOH HOH . E 3 HOH A 51 451 134 HOH HOH . E 3 HOH A 52 452 140 HOH HOH . E 3 HOH A 53 453 143 HOH HOH . E 3 HOH A 54 454 149 HOH HOH . E 3 HOH A 55 455 150 HOH HOH . E 3 HOH A 56 456 154 HOH HOH . E 3 HOH A 57 457 158 HOH HOH . F 3 HOH B 1 301 7 HOH HOH . F 3 HOH B 2 302 15 HOH HOH . F 3 HOH B 3 303 16 HOH HOH . F 3 HOH B 4 304 18 HOH HOH . F 3 HOH B 5 305 21 HOH HOH . F 3 HOH B 6 306 28 HOH HOH . F 3 HOH B 7 307 41 HOH HOH . F 3 HOH B 8 308 44 HOH HOH . F 3 HOH B 9 309 46 HOH HOH . F 3 HOH B 10 310 64 HOH HOH . F 3 HOH B 11 311 65 HOH HOH . F 3 HOH B 12 312 71 HOH HOH . F 3 HOH B 13 313 72 HOH HOH . F 3 HOH B 14 314 78 HOH HOH . F 3 HOH B 15 315 90 HOH HOH . F 3 HOH B 16 316 96 HOH HOH . F 3 HOH B 17 317 97 HOH HOH . F 3 HOH B 18 318 98 HOH HOH . F 3 HOH B 19 319 106 HOH HOH . F 3 HOH B 20 320 107 HOH HOH . F 3 HOH B 21 321 108 HOH HOH . F 3 HOH B 22 322 109 HOH HOH . F 3 HOH B 23 323 112 HOH HOH . F 3 HOH B 24 324 114 HOH HOH . F 3 HOH B 25 325 116 HOH HOH . F 3 HOH B 26 326 117 HOH HOH . F 3 HOH B 27 327 118 HOH HOH . F 3 HOH B 28 328 119 HOH HOH . F 3 HOH B 29 329 131 HOH HOH . F 3 HOH B 30 330 137 HOH HOH . F 3 HOH B 31 331 141 HOH HOH . F 3 HOH B 32 332 155 HOH HOH . F 3 HOH B 33 333 159 HOH HOH . G 3 HOH C 1 301 2 HOH HOH . G 3 HOH C 2 302 3 HOH HOH . G 3 HOH C 3 303 9 HOH HOH . G 3 HOH C 4 304 10 HOH HOH . G 3 HOH C 5 305 26 HOH HOH . G 3 HOH C 6 306 27 HOH HOH . G 3 HOH C 7 307 43 HOH HOH . G 3 HOH C 8 308 52 HOH HOH . G 3 HOH C 9 309 53 HOH HOH . G 3 HOH C 10 310 55 HOH HOH . G 3 HOH C 11 311 57 HOH HOH . G 3 HOH C 12 312 80 HOH HOH . G 3 HOH C 13 313 81 HOH HOH . G 3 HOH C 14 314 91 HOH HOH . G 3 HOH C 15 315 99 HOH HOH . G 3 HOH C 16 316 100 HOH HOH . G 3 HOH C 17 317 101 HOH HOH . G 3 HOH C 18 318 102 HOH HOH . G 3 HOH C 19 319 103 HOH HOH . G 3 HOH C 20 320 120 HOH HOH . G 3 HOH C 21 321 121 HOH HOH . G 3 HOH C 22 322 122 HOH HOH . G 3 HOH C 23 323 123 HOH HOH . G 3 HOH C 24 324 124 HOH HOH . G 3 HOH C 25 325 130 HOH HOH . G 3 HOH C 26 326 138 HOH HOH . G 3 HOH C 27 327 148 HOH HOH . G 3 HOH C 28 328 152 HOH HOH . G 3 HOH C 29 329 160 HOH HOH . G 3 HOH C 30 330 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 14.535 -22.286 13.573 1 53.42 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . D 2 13.7 -23.324 13.03 1 62.38 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . D 2 13.761 -21.414 14.552 1 52.09 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . D 2 12.941 -20.488 13.833 1 53.18 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . D 2 14.771 -20.652 15.408 1 51.48 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . D 2 14.181 -19.568 16.147 1 46.73 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #