data_4GI1
#
_model_server_result.job_id            sDR05EW8JcJOYKpTyX4y3Q 
_model_server_result.datetime_utc      '2024-11-13 18:58:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gi1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4GI1 
#
_exptl.entry_id    4GI1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GI1 
_cell.length_a            140.837 
_cell.length_b            140.837 
_cell.length_c            80.577 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 36 A CYS 36 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
disulf ? disulf3 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 B SG CYS 36 B CYS 36 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
disulf ? disulf6 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     4GI1 
_atom_sites.fract_transf_matrix[1][1]    0.0071 
_atom_sites.fract_transf_matrix[1][2]    0.004099 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 1 GOL GOL . 
D 3 16Y A 1 302 1 16Y LLL . 
E 2 GOL B 1 301 1 GOL GOL . 
F 3 16Y B 1 302 2 16Y LLL . 
G 4 HOH A 1 401 1 HOH HOH . 
G 4 HOH A 2 402 3 HOH HOH . 
G 4 HOH A 3 403 6 HOH HOH . 
G 4 HOH A 4 404 8 HOH HOH . 
G 4 HOH A 5 405 9 HOH HOH . 
G 4 HOH A 6 406 11 HOH HOH . 
G 4 HOH A 7 407 14 HOH HOH . 
G 4 HOH A 8 408 17 HOH HOH . 
G 4 HOH A 9 409 20 HOH HOH . 
G 4 HOH A 10 410 21 HOH HOH . 
G 4 HOH A 11 411 24 HOH HOH . 
G 4 HOH A 12 412 25 HOH HOH . 
G 4 HOH A 13 413 27 HOH HOH . 
G 4 HOH A 14 414 28 HOH HOH . 
G 4 HOH A 15 415 31 HOH HOH . 
G 4 HOH A 16 416 33 HOH HOH . 
G 4 HOH A 17 417 34 HOH HOH . 
G 4 HOH A 18 418 35 HOH HOH . 
G 4 HOH A 19 419 36 HOH HOH . 
G 4 HOH A 20 420 37 HOH HOH . 
G 4 HOH A 21 421 39 HOH HOH . 
G 4 HOH A 22 422 41 HOH HOH . 
G 4 HOH A 23 423 42 HOH HOH . 
G 4 HOH A 24 424 43 HOH HOH . 
G 4 HOH A 25 425 44 HOH HOH . 
G 4 HOH A 26 426 45 HOH HOH . 
G 4 HOH A 27 427 48 HOH HOH . 
G 4 HOH A 28 428 50 HOH HOH . 
G 4 HOH A 29 429 51 HOH HOH . 
G 4 HOH A 30 430 53 HOH HOH . 
G 4 HOH A 31 431 55 HOH HOH . 
G 4 HOH A 32 432 56 HOH HOH . 
G 4 HOH A 33 433 60 HOH HOH . 
G 4 HOH A 34 434 61 HOH HOH . 
G 4 HOH A 35 435 62 HOH HOH . 
G 4 HOH A 36 436 64 HOH HOH . 
G 4 HOH A 37 437 68 HOH HOH . 
G 4 HOH A 38 438 69 HOH HOH . 
G 4 HOH A 39 439 71 HOH HOH . 
G 4 HOH A 40 440 73 HOH HOH . 
G 4 HOH A 41 441 75 HOH HOH . 
G 4 HOH A 42 442 76 HOH HOH . 
G 4 HOH A 43 443 77 HOH HOH . 
G 4 HOH A 44 444 78 HOH HOH . 
G 4 HOH A 45 445 81 HOH HOH . 
G 4 HOH A 46 446 82 HOH HOH . 
G 4 HOH A 47 447 84 HOH HOH . 
G 4 HOH A 48 448 85 HOH HOH . 
G 4 HOH A 49 449 90 HOH HOH . 
G 4 HOH A 50 450 91 HOH HOH . 
G 4 HOH A 51 451 92 HOH HOH . 
G 4 HOH A 52 452 93 HOH HOH . 
G 4 HOH A 53 453 94 HOH HOH . 
G 4 HOH A 54 454 100 HOH HOH . 
G 4 HOH A 55 455 101 HOH HOH . 
G 4 HOH A 56 456 104 HOH HOH . 
G 4 HOH A 57 457 105 HOH HOH . 
G 4 HOH A 58 458 109 HOH HOH . 
G 4 HOH A 59 459 111 HOH HOH . 
G 4 HOH A 60 460 112 HOH HOH . 
G 4 HOH A 61 461 113 HOH HOH . 
G 4 HOH A 62 462 116 HOH HOH . 
G 4 HOH A 63 463 117 HOH HOH . 
G 4 HOH A 64 464 121 HOH HOH . 
G 4 HOH A 65 465 124 HOH HOH . 
G 4 HOH A 66 466 130 HOH HOH . 
G 4 HOH A 67 467 132 HOH HOH . 
G 4 HOH A 68 468 133 HOH HOH . 
G 4 HOH A 69 469 135 HOH HOH . 
G 4 HOH A 70 470 141 HOH HOH . 
G 4 HOH A 71 471 151 HOH HOH . 
G 4 HOH A 72 472 152 HOH HOH . 
G 4 HOH A 73 473 153 HOH HOH . 
G 4 HOH A 74 474 154 HOH HOH . 
G 4 HOH A 75 475 155 HOH HOH . 
G 4 HOH A 76 476 156 HOH HOH . 
G 4 HOH A 77 477 158 HOH HOH . 
G 4 HOH A 78 478 159 HOH HOH . 
G 4 HOH A 79 479 160 HOH HOH . 
G 4 HOH A 80 480 161 HOH HOH . 
G 4 HOH A 81 481 162 HOH HOH . 
G 4 HOH A 82 482 164 HOH HOH . 
G 4 HOH A 83 483 165 HOH HOH . 
G 4 HOH A 84 484 168 HOH HOH . 
G 4 HOH A 85 485 169 HOH HOH . 
G 4 HOH A 86 486 170 HOH HOH . 
G 4 HOH A 87 487 191 HOH HOH . 
G 4 HOH A 88 488 192 HOH HOH . 
G 4 HOH A 89 489 193 HOH HOH . 
G 4 HOH A 90 490 195 HOH HOH . 
G 4 HOH A 91 491 197 HOH HOH . 
G 4 HOH A 92 492 198 HOH HOH . 
G 4 HOH A 93 493 199 HOH HOH . 
G 4 HOH A 94 494 200 HOH HOH . 
G 4 HOH A 95 495 201 HOH HOH . 
G 4 HOH A 96 496 202 HOH HOH . 
G 4 HOH A 97 497 205 HOH HOH . 
G 4 HOH A 98 498 206 HOH HOH . 
G 4 HOH A 99 499 1 HOH HOH . 
H 4 HOH B 1 401 2 HOH HOH . 
H 4 HOH B 2 402 5 HOH HOH . 
H 4 HOH B 3 403 10 HOH HOH . 
H 4 HOH B 4 404 13 HOH HOH . 
H 4 HOH B 5 405 16 HOH HOH . 
H 4 HOH B 6 406 18 HOH HOH . 
H 4 HOH B 7 407 22 HOH HOH . 
H 4 HOH B 8 408 23 HOH HOH . 
H 4 HOH B 9 409 26 HOH HOH . 
H 4 HOH B 10 410 29 HOH HOH . 
H 4 HOH B 11 411 30 HOH HOH . 
H 4 HOH B 12 412 32 HOH HOH . 
H 4 HOH B 13 413 38 HOH HOH . 
H 4 HOH B 14 414 40 HOH HOH . 
H 4 HOH B 15 415 46 HOH HOH . 
H 4 HOH B 16 416 47 HOH HOH . 
H 4 HOH B 17 417 49 HOH HOH . 
H 4 HOH B 18 418 52 HOH HOH . 
H 4 HOH B 19 419 54 HOH HOH . 
H 4 HOH B 20 420 57 HOH HOH . 
H 4 HOH B 21 421 58 HOH HOH . 
H 4 HOH B 22 422 59 HOH HOH . 
H 4 HOH B 23 423 63 HOH HOH . 
H 4 HOH B 24 424 65 HOH HOH . 
H 4 HOH B 25 425 66 HOH HOH . 
H 4 HOH B 26 426 67 HOH HOH . 
H 4 HOH B 27 427 70 HOH HOH . 
H 4 HOH B 28 428 72 HOH HOH . 
H 4 HOH B 29 429 74 HOH HOH . 
H 4 HOH B 30 430 79 HOH HOH . 
H 4 HOH B 31 431 83 HOH HOH . 
H 4 HOH B 32 432 86 HOH HOH . 
H 4 HOH B 33 433 89 HOH HOH . 
H 4 HOH B 34 434 95 HOH HOH . 
H 4 HOH B 35 435 96 HOH HOH . 
H 4 HOH B 36 436 97 HOH HOH . 
H 4 HOH B 37 437 98 HOH HOH . 
H 4 HOH B 38 438 99 HOH HOH . 
H 4 HOH B 39 439 102 HOH HOH . 
H 4 HOH B 40 440 103 HOH HOH . 
H 4 HOH B 41 441 108 HOH HOH . 
H 4 HOH B 42 442 110 HOH HOH . 
H 4 HOH B 43 443 114 HOH HOH . 
H 4 HOH B 44 444 115 HOH HOH . 
H 4 HOH B 45 445 118 HOH HOH . 
H 4 HOH B 46 446 119 HOH HOH . 
H 4 HOH B 47 447 122 HOH HOH . 
H 4 HOH B 48 448 123 HOH HOH . 
H 4 HOH B 49 449 125 HOH HOH . 
H 4 HOH B 50 450 126 HOH HOH . 
H 4 HOH B 51 451 127 HOH HOH . 
H 4 HOH B 52 452 128 HOH HOH . 
H 4 HOH B 53 453 129 HOH HOH . 
H 4 HOH B 54 454 131 HOH HOH . 
H 4 HOH B 55 455 134 HOH HOH . 
H 4 HOH B 56 456 136 HOH HOH . 
H 4 HOH B 57 457 137 HOH HOH . 
H 4 HOH B 58 458 138 HOH HOH . 
H 4 HOH B 59 459 139 HOH HOH . 
H 4 HOH B 60 460 140 HOH HOH . 
H 4 HOH B 61 461 142 HOH HOH . 
H 4 HOH B 62 462 143 HOH HOH . 
H 4 HOH B 63 463 144 HOH HOH . 
H 4 HOH B 64 464 145 HOH HOH . 
H 4 HOH B 65 465 146 HOH HOH . 
H 4 HOH B 66 466 147 HOH HOH . 
H 4 HOH B 67 467 148 HOH HOH . 
H 4 HOH B 68 468 150 HOH HOH . 
H 4 HOH B 69 469 166 HOH HOH . 
H 4 HOH B 70 470 167 HOH HOH . 
H 4 HOH B 71 471 171 HOH HOH . 
H 4 HOH B 72 472 172 HOH HOH . 
H 4 HOH B 73 473 173 HOH HOH . 
H 4 HOH B 74 474 175 HOH HOH . 
H 4 HOH B 75 475 176 HOH HOH . 
H 4 HOH B 76 476 177 HOH HOH . 
H 4 HOH B 77 477 178 HOH HOH . 
H 4 HOH B 78 478 179 HOH HOH . 
H 4 HOH B 79 479 180 HOH HOH . 
H 4 HOH B 80 480 181 HOH HOH . 
H 4 HOH B 81 481 182 HOH HOH . 
H 4 HOH B 82 482 185 HOH HOH . 
H 4 HOH B 83 483 187 HOH HOH . 
H 4 HOH B 84 484 188 HOH HOH . 
H 4 HOH B 85 485 189 HOH HOH . 
H 4 HOH B 86 486 190 HOH HOH . 
H 4 HOH B 87 487 203 HOH HOH . 
H 4 HOH B 88 488 204 HOH HOH . 
H 4 HOH B 89 489 207 HOH HOH . 
H 4 HOH B 90 490 208 HOH HOH . 
H 4 HOH B 91 491 209 HOH HOH . 
H 4 HOH B 92 492 210 HOH HOH . 
H 4 HOH B 93 493 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -44.086 -3.202 1.784 1 60.35 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . C 2 -44.453 -1.945 2.331 1 60.7 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . C 2 -43.963 -4.23 2.9 1 58.64 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . C 2 -43.01 -5.317 2.676 1 60.01 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . C 2 -43.953 -3.422 4.212 1 54.65 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . C 2 -43.099 -3.898 5.242 1 46.71 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#