data_4GI1 # _model_server_result.job_id eh4LXvFk7_fPxKE2XWjsxg _model_server_result.datetime_utc '2024-11-13 19:22:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gi1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4GI1 # _exptl.entry_id 4GI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.423 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '16-hydroxyhexadecanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GI1 _cell.length_a 140.837 _cell.length_b 140.837 _cell.length_c 80.577 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 36 A CYS 36 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf3 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 B SG CYS 36 B CYS 36 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? disulf ? disulf6 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C16 H32 O3' _chem_comp.formula_weight 272.423 _chem_comp.id 16Y _chem_comp.mon_nstd_flag . _chem_comp.name '16-hydroxyhexadecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 16Y sing 1 n n C1 C10 16Y sing 2 n n C2 C3 16Y sing 3 n n C12 C11 16Y sing 4 n n C12 C13 16Y sing 5 n n C10 C11 16Y sing 6 n n C13 C14 16Y sing 7 n n C14 C15 16Y sing 8 n n C3 C4 16Y sing 9 n n C4 C5 16Y sing 10 n n C15 C16 16Y sing 11 n n C5 C6 16Y sing 12 n n C16 C17 16Y sing 13 n n O19 C17 16Y doub 14 n n C17 O18 16Y sing 15 n n C6 C7 16Y sing 16 n n C7 C8 16Y sing 17 n n C8 O9 16Y sing 18 n n O18 H1 16Y sing 19 n n C16 H2 16Y sing 20 n n C16 H3 16Y sing 21 n n C15 H4 16Y sing 22 n n C15 H5 16Y sing 23 n n C14 H6 16Y sing 24 n n C13 H7 16Y sing 25 n n C12 H8 16Y sing 26 n n C12 H9 16Y sing 27 n n C11 H10 16Y sing 28 n n C11 H11 16Y sing 29 n n C10 H12 16Y sing 30 n n C10 H13 16Y sing 31 n n C1 H14 16Y sing 32 n n C1 H15 16Y sing 33 n n C2 H16 16Y sing 34 n n C2 H17 16Y sing 35 n n C3 H18 16Y sing 36 n n C3 H19 16Y sing 37 n n C4 H20 16Y sing 38 n n C4 H21 16Y sing 39 n n C5 H22 16Y sing 40 n n C5 H23 16Y sing 41 n n C6 H24 16Y sing 42 n n C6 H25 16Y sing 43 n n C7 H26 16Y sing 44 n n C7 H27 16Y sing 45 n n C8 H28 16Y sing 46 n n C8 H29 16Y sing 47 n n O9 H30 16Y sing 48 n n C14 H31 16Y sing 49 n n C13 H32 16Y sing 50 n n # _atom_sites.entry_id 4GI1 _atom_sites.fract_transf_matrix[1][1] 0.0071 _atom_sites.fract_transf_matrix[1][2] 0.004099 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 3 16Y A 1 302 1 16Y LLL . E 2 GOL B 1 301 1 GOL GOL . F 3 16Y B 1 302 2 16Y LLL . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 8 HOH HOH . G 4 HOH A 5 405 9 HOH HOH . G 4 HOH A 6 406 11 HOH HOH . G 4 HOH A 7 407 14 HOH HOH . G 4 HOH A 8 408 17 HOH HOH . G 4 HOH A 9 409 20 HOH HOH . G 4 HOH A 10 410 21 HOH HOH . G 4 HOH A 11 411 24 HOH HOH . G 4 HOH A 12 412 25 HOH HOH . G 4 HOH A 13 413 27 HOH HOH . G 4 HOH A 14 414 28 HOH HOH . G 4 HOH A 15 415 31 HOH HOH . G 4 HOH A 16 416 33 HOH HOH . G 4 HOH A 17 417 34 HOH HOH . G 4 HOH A 18 418 35 HOH HOH . G 4 HOH A 19 419 36 HOH HOH . G 4 HOH A 20 420 37 HOH HOH . G 4 HOH A 21 421 39 HOH HOH . G 4 HOH A 22 422 41 HOH HOH . G 4 HOH A 23 423 42 HOH HOH . G 4 HOH A 24 424 43 HOH HOH . G 4 HOH A 25 425 44 HOH HOH . G 4 HOH A 26 426 45 HOH HOH . G 4 HOH A 27 427 48 HOH HOH . G 4 HOH A 28 428 50 HOH HOH . G 4 HOH A 29 429 51 HOH HOH . G 4 HOH A 30 430 53 HOH HOH . G 4 HOH A 31 431 55 HOH HOH . G 4 HOH A 32 432 56 HOH HOH . G 4 HOH A 33 433 60 HOH HOH . G 4 HOH A 34 434 61 HOH HOH . G 4 HOH A 35 435 62 HOH HOH . G 4 HOH A 36 436 64 HOH HOH . G 4 HOH A 37 437 68 HOH HOH . G 4 HOH A 38 438 69 HOH HOH . G 4 HOH A 39 439 71 HOH HOH . G 4 HOH A 40 440 73 HOH HOH . G 4 HOH A 41 441 75 HOH HOH . G 4 HOH A 42 442 76 HOH HOH . G 4 HOH A 43 443 77 HOH HOH . G 4 HOH A 44 444 78 HOH HOH . G 4 HOH A 45 445 81 HOH HOH . G 4 HOH A 46 446 82 HOH HOH . G 4 HOH A 47 447 84 HOH HOH . G 4 HOH A 48 448 85 HOH HOH . G 4 HOH A 49 449 90 HOH HOH . G 4 HOH A 50 450 91 HOH HOH . G 4 HOH A 51 451 92 HOH HOH . G 4 HOH A 52 452 93 HOH HOH . G 4 HOH A 53 453 94 HOH HOH . G 4 HOH A 54 454 100 HOH HOH . G 4 HOH A 55 455 101 HOH HOH . G 4 HOH A 56 456 104 HOH HOH . G 4 HOH A 57 457 105 HOH HOH . G 4 HOH A 58 458 109 HOH HOH . G 4 HOH A 59 459 111 HOH HOH . G 4 HOH A 60 460 112 HOH HOH . G 4 HOH A 61 461 113 HOH HOH . G 4 HOH A 62 462 116 HOH HOH . G 4 HOH A 63 463 117 HOH HOH . G 4 HOH A 64 464 121 HOH HOH . G 4 HOH A 65 465 124 HOH HOH . G 4 HOH A 66 466 130 HOH HOH . G 4 HOH A 67 467 132 HOH HOH . G 4 HOH A 68 468 133 HOH HOH . G 4 HOH A 69 469 135 HOH HOH . G 4 HOH A 70 470 141 HOH HOH . G 4 HOH A 71 471 151 HOH HOH . G 4 HOH A 72 472 152 HOH HOH . G 4 HOH A 73 473 153 HOH HOH . G 4 HOH A 74 474 154 HOH HOH . G 4 HOH A 75 475 155 HOH HOH . G 4 HOH A 76 476 156 HOH HOH . G 4 HOH A 77 477 158 HOH HOH . G 4 HOH A 78 478 159 HOH HOH . G 4 HOH A 79 479 160 HOH HOH . G 4 HOH A 80 480 161 HOH HOH . G 4 HOH A 81 481 162 HOH HOH . G 4 HOH A 82 482 164 HOH HOH . G 4 HOH A 83 483 165 HOH HOH . G 4 HOH A 84 484 168 HOH HOH . G 4 HOH A 85 485 169 HOH HOH . G 4 HOH A 86 486 170 HOH HOH . G 4 HOH A 87 487 191 HOH HOH . G 4 HOH A 88 488 192 HOH HOH . G 4 HOH A 89 489 193 HOH HOH . G 4 HOH A 90 490 195 HOH HOH . G 4 HOH A 91 491 197 HOH HOH . G 4 HOH A 92 492 198 HOH HOH . G 4 HOH A 93 493 199 HOH HOH . G 4 HOH A 94 494 200 HOH HOH . G 4 HOH A 95 495 201 HOH HOH . G 4 HOH A 96 496 202 HOH HOH . G 4 HOH A 97 497 205 HOH HOH . G 4 HOH A 98 498 206 HOH HOH . G 4 HOH A 99 499 1 HOH HOH . H 4 HOH B 1 401 2 HOH HOH . H 4 HOH B 2 402 5 HOH HOH . H 4 HOH B 3 403 10 HOH HOH . H 4 HOH B 4 404 13 HOH HOH . H 4 HOH B 5 405 16 HOH HOH . H 4 HOH B 6 406 18 HOH HOH . H 4 HOH B 7 407 22 HOH HOH . H 4 HOH B 8 408 23 HOH HOH . H 4 HOH B 9 409 26 HOH HOH . H 4 HOH B 10 410 29 HOH HOH . H 4 HOH B 11 411 30 HOH HOH . H 4 HOH B 12 412 32 HOH HOH . H 4 HOH B 13 413 38 HOH HOH . H 4 HOH B 14 414 40 HOH HOH . H 4 HOH B 15 415 46 HOH HOH . H 4 HOH B 16 416 47 HOH HOH . H 4 HOH B 17 417 49 HOH HOH . H 4 HOH B 18 418 52 HOH HOH . H 4 HOH B 19 419 54 HOH HOH . H 4 HOH B 20 420 57 HOH HOH . H 4 HOH B 21 421 58 HOH HOH . H 4 HOH B 22 422 59 HOH HOH . H 4 HOH B 23 423 63 HOH HOH . H 4 HOH B 24 424 65 HOH HOH . H 4 HOH B 25 425 66 HOH HOH . H 4 HOH B 26 426 67 HOH HOH . H 4 HOH B 27 427 70 HOH HOH . H 4 HOH B 28 428 72 HOH HOH . H 4 HOH B 29 429 74 HOH HOH . H 4 HOH B 30 430 79 HOH HOH . H 4 HOH B 31 431 83 HOH HOH . H 4 HOH B 32 432 86 HOH HOH . H 4 HOH B 33 433 89 HOH HOH . H 4 HOH B 34 434 95 HOH HOH . H 4 HOH B 35 435 96 HOH HOH . H 4 HOH B 36 436 97 HOH HOH . H 4 HOH B 37 437 98 HOH HOH . H 4 HOH B 38 438 99 HOH HOH . H 4 HOH B 39 439 102 HOH HOH . H 4 HOH B 40 440 103 HOH HOH . H 4 HOH B 41 441 108 HOH HOH . H 4 HOH B 42 442 110 HOH HOH . H 4 HOH B 43 443 114 HOH HOH . H 4 HOH B 44 444 115 HOH HOH . H 4 HOH B 45 445 118 HOH HOH . H 4 HOH B 46 446 119 HOH HOH . H 4 HOH B 47 447 122 HOH HOH . H 4 HOH B 48 448 123 HOH HOH . H 4 HOH B 49 449 125 HOH HOH . H 4 HOH B 50 450 126 HOH HOH . H 4 HOH B 51 451 127 HOH HOH . H 4 HOH B 52 452 128 HOH HOH . H 4 HOH B 53 453 129 HOH HOH . H 4 HOH B 54 454 131 HOH HOH . H 4 HOH B 55 455 134 HOH HOH . H 4 HOH B 56 456 136 HOH HOH . H 4 HOH B 57 457 137 HOH HOH . H 4 HOH B 58 458 138 HOH HOH . H 4 HOH B 59 459 139 HOH HOH . H 4 HOH B 60 460 140 HOH HOH . H 4 HOH B 61 461 142 HOH HOH . H 4 HOH B 62 462 143 HOH HOH . H 4 HOH B 63 463 144 HOH HOH . H 4 HOH B 64 464 145 HOH HOH . H 4 HOH B 65 465 146 HOH HOH . H 4 HOH B 66 466 147 HOH HOH . H 4 HOH B 67 467 148 HOH HOH . H 4 HOH B 68 468 150 HOH HOH . H 4 HOH B 69 469 166 HOH HOH . H 4 HOH B 70 470 167 HOH HOH . H 4 HOH B 71 471 171 HOH HOH . H 4 HOH B 72 472 172 HOH HOH . H 4 HOH B 73 473 173 HOH HOH . H 4 HOH B 74 474 175 HOH HOH . H 4 HOH B 75 475 176 HOH HOH . H 4 HOH B 76 476 177 HOH HOH . H 4 HOH B 77 477 178 HOH HOH . H 4 HOH B 78 478 179 HOH HOH . H 4 HOH B 79 479 180 HOH HOH . H 4 HOH B 80 480 181 HOH HOH . H 4 HOH B 81 481 182 HOH HOH . H 4 HOH B 82 482 185 HOH HOH . H 4 HOH B 83 483 187 HOH HOH . H 4 HOH B 84 484 188 HOH HOH . H 4 HOH B 85 485 189 HOH HOH . H 4 HOH B 86 486 190 HOH HOH . H 4 HOH B 87 487 203 HOH HOH . H 4 HOH B 88 488 204 HOH HOH . H 4 HOH B 89 489 207 HOH HOH . H 4 HOH B 90 490 208 HOH HOH . H 4 HOH B 91 491 209 HOH HOH . H 4 HOH B 92 492 210 HOH HOH . H 4 HOH B 93 493 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 16Y . . . F 3 -35.879 17.561 -14.654 1 61.94 ? O19 16Y 302 B 1 HETATM 2 C C17 16Y . . . F 3 -35.824 16.376 -15.051 1 60.57 ? C17 16Y 302 B 1 HETATM 3 O O18 16Y . . . F 3 -35.382 16.159 -16.183 1 56.92 ? O18 16Y 302 B 1 HETATM 4 C C16 16Y . . . F 3 -36.325 15.198 -14.218 1 63.66 ? C16 16Y 302 B 1 HETATM 5 C C15 16Y . . . F 3 -35.681 15.234 -12.817 1 69.16 ? C15 16Y 302 B 1 HETATM 6 C C14 16Y . . . F 3 -36.063 14.19 -11.746 1 68.33 ? C14 16Y 302 B 1 HETATM 7 C C13 16Y . . . F 3 -35.081 12.983 -11.626 1 72.34 ? C13 16Y 302 B 1 HETATM 8 C C12 16Y . . . F 3 -35.258 12.136 -10.336 1 74.23 ? C12 16Y 302 B 1 HETATM 9 C C11 16Y . . . F 3 -35.175 10.598 -10.454 1 75.27 ? C11 16Y 302 B 1 HETATM 10 C C10 16Y . . . F 3 -36.381 9.745 -9.953 1 73.74 ? C10 16Y 302 B 1 HETATM 11 C C1 16Y . . . F 3 -36.06 8.226 -9.903 1 72.77 ? C1 16Y 302 B 1 HETATM 12 C C2 16Y . . . F 3 -37.132 7.26 -10.427 1 67.92 ? C2 16Y 302 B 1 HETATM 13 C C3 16Y . . . F 3 -36.772 6.713 -11.793 1 66.42 ? C3 16Y 302 B 1 HETATM 14 C C4 16Y . . . F 3 -38.035 6.253 -12.507 1 65.26 ? C4 16Y 302 B 1 HETATM 15 C C5 16Y . . . F 3 -38.342 7.042 -13.797 1 66.24 ? C5 16Y 302 B 1 HETATM 16 C C6 16Y . . . F 3 -39.211 6.191 -14.765 1 64.75 ? C6 16Y 302 B 1 HETATM 17 C C7 16Y . . . F 3 -39.773 6.94 -15.976 1 64.19 ? C7 16Y 302 B 1 HETATM 18 C C8 16Y . . . F 3 -40.95 6.198 -16.628 1 63.03 ? C8 16Y 302 B 1 HETATM 19 O O9 16Y . . . F 3 -41.452 6.93 -17.786 1 61.1 ? O9 16Y 302 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #