data_4GI2
#
_model_server_result.job_id            VaGVmj_QUTreD8Vj6pLuAA 
_model_server_result.datetime_utc      '2024-11-14 07:04:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gi2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4GI2 
#
_exptl.entry_id    4GI2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GI2 
_cell.length_a            91.4 
_cell.length_b            91.4 
_cell.length_c            206.1 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GI2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1,2 
B,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O VAL 76 A VAL 76 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc2 A OD1 ASN 77 A ASN 77 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     4GI2 
_atom_sites.fract_transf_matrix[1][1]    0.010941 
_atom_sites.fract_transf_matrix[1][2]    0.006317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 1 MG MG . 
D 3 NAP A 1 502 1 NAP NAP . 
E 3 NAP B 1 501 1 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 3 22.701 79.036 11.835 1 100.94 ? PA NAP 501 B 1 
HETATM 2 O O1A NAP . . . E 3 23.049 80.364 11.248 1 92.94 ? O1A NAP 501 B 1 
HETATM 3 O O2A NAP . . . E 3 21.85 79.177 13.071 1 108.8 ? O2A NAP 501 B 1 
HETATM 4 O O5B NAP . . . E 3 24.087 78.337 12.147 1 77.85 ? O5B NAP 501 B 1 
HETATM 5 C C5B NAP . . . E 3 25.22 79.132 12.318 1 87.58 ? C5B NAP 501 B 1 
HETATM 6 C C4B NAP . . . E 3 26.198 78.561 13.31 1 104.37 ? C4B NAP 501 B 1 
HETATM 7 O O4B NAP . . . E 3 27.511 78.634 12.777 1 105.87 ? O4B NAP 501 B 1 
HETATM 8 C C3B NAP . . . E 3 26.195 79.232 14.661 1 107.9 ? C3B NAP 501 B 1 
HETATM 9 O O3B NAP . . . E 3 25.617 78.395 15.591 1 107.61 ? O3B NAP 501 B 1 
HETATM 10 C C2B NAP . . . E 3 27.586 79.458 15.05 1 109.96 ? C2B NAP 501 B 1 
HETATM 11 O O2B NAP . . . E 3 27.836 78.768 16.208 1 123.75 ? O2B NAP 501 B 1 
HETATM 12 C C1B NAP . . . E 3 28.269 78.826 13.933 1 107.14 ? C1B NAP 501 B 1 
HETATM 13 N N9A NAP . . . E 3 29.576 79.573 13.501 1 108.73 ? N9A NAP 501 B 1 
HETATM 14 C C8A NAP . . . E 3 29.65 80.875 12.892 1 102.86 ? C8A NAP 501 B 1 
HETATM 15 N N7A NAP . . . E 3 30.975 81.154 12.642 1 101 ? N7A NAP 501 B 1 
HETATM 16 C C5A NAP . . . E 3 31.678 80.143 13.033 1 114.37 ? C5A NAP 501 B 1 
HETATM 17 C C6A NAP . . . E 3 33.12 80.015 12.957 1 115.22 ? C6A NAP 501 B 1 
HETATM 18 N N6A NAP . . . E 3 33.898 81.062 12.407 1 102.58 ? N6A NAP 501 B 1 
HETATM 19 N N1A NAP . . . E 3 33.723 78.83 13.436 1 130.36 ? N1A NAP 501 B 1 
HETATM 20 C C2A NAP . . . E 3 32.763 78.021 13.892 1 139.54 ? C2A NAP 501 B 1 
HETATM 21 N N3A NAP . . . E 3 31.439 77.973 14.04 1 139.39 ? N3A NAP 501 B 1 
HETATM 22 C C4A NAP . . . E 3 30.908 79.144 13.557 1 124.51 ? C4A NAP 501 B 1 
HETATM 23 O O3 NAP . . . E 3 21.825 78.283 10.753 1 187.74 ? O3 NAP 501 B 1 
HETATM 24 P PN NAP . . . E 3 22.409 77.041 9.998 1 89.22 ? PN NAP 501 B 1 
HETATM 25 O O1N NAP . . . E 3 21.233 76.459 9.251 1 87.12 ? O1N NAP 501 B 1 
HETATM 26 O O2N NAP . . . E 3 22.955 76.058 11.017 1 100.92 ? O2N NAP 501 B 1 
HETATM 27 O O5D NAP . . . E 3 23.578 77.487 9.02 1 75.91 ? O5D NAP 501 B 1 
HETATM 28 C C5D NAP . . . E 3 24.066 76.551 8.086 1 85.37 ? C5D NAP 501 B 1 
HETATM 29 C C4D NAP . . . E 3 24.789 77.137 6.883 1 94.9 ? C4D NAP 501 B 1 
HETATM 30 O O4D NAP . . . E 3 24.732 76.155 5.854 1 96.58 ? O4D NAP 501 B 1 
HETATM 31 C C3D NAP . . . E 3 24.24 78.381 6.316 1 97.39 ? C3D NAP 501 B 1 
HETATM 32 O O3D NAP . . . E 3 25.247 79 5.59 1 83.34 ? O3D NAP 501 B 1 
HETATM 33 C C2D NAP . . . E 3 23.168 77.921 5.437 1 103.08 ? C2D NAP 501 B 1 
HETATM 34 O O2D NAP . . . E 3 22.935 78.767 4.378 1 94.53 ? O2D NAP 501 B 1 
HETATM 35 C C1D NAP . . . E 3 23.749 76.645 4.97 1 103.92 ? C1D NAP 501 B 1 
HETATM 36 N N1N NAP . . . E 3 22.762 75.579 4.747 1 99.79 ? N1N NAP 501 B 1 
HETATM 37 C C2N NAP . . . E 3 22.913 74.732 3.698 1 93.25 ? C2N NAP 501 B 1 
HETATM 38 C C3N NAP . . . E 3 22.293 73.638 3.119 1 86.56 ? C3N NAP 501 B 1 
HETATM 39 C C7N NAP . . . E 3 22.831 72.963 1.859 1 89.93 ? C7N NAP 501 B 1 
HETATM 40 O O7N NAP . . . E 3 22.516 71.825 1.561 1 90.62 ? O7N NAP 501 B 1 
HETATM 41 N N7N NAP . . . E 3 23.726 73.7 1.004 1 92.59 ? N7N NAP 501 B 1 
HETATM 42 C C4N NAP . . . E 3 21.127 73.346 3.921 1 85.54 ? C4N NAP 501 B 1 
HETATM 43 C C5N NAP . . . E 3 20.822 74.169 5.1 1 94.01 ? C5N NAP 501 B 1 
HETATM 44 C C6N NAP . . . E 3 21.656 75.282 5.493 1 94.96 ? C6N NAP 501 B 1 
HETATM 45 P P2B NAP . . . E 3 28.829 79.18 17.341 1 114.8 ? P2B NAP 501 B 1 
HETATM 46 O O1X NAP . . . E 3 28.888 80.694 17.456 1 117.09 ? O1X NAP 501 B 1 
HETATM 47 O O2X NAP . . . E 3 30.204 78.614 17.054 1 103.69 ? O2X NAP 501 B 1 
HETATM 48 O O3X NAP . . . E 3 28.296 78.59 18.637 1 102.77 ? O3X NAP 501 B 1 
HETATM 49 H H1B NAP . . . E 3 29.045 79.24 13.749 1 128.56 ? H1B NAP 501 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           373 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           49 
#