data_4GI2
#
_model_server_result.job_id            2W5KJ5SCFcMtVcDh1SBHKw 
_model_server_result.datetime_utc      '2024-11-22 06:22:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gi2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4GI2 
#
_exptl.entry_id    4GI2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GI2 
_cell.length_a            91.4 
_cell.length_b            91.4 
_cell.length_c            206.1 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GI2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1,2 
B,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O VAL 76 A VAL 76 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc2 A OD1 ASN 77 A ASN 77 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     4GI2 
_atom_sites.fract_transf_matrix[1][1]    0.010941 
_atom_sites.fract_transf_matrix[1][2]    0.006317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 1 MG MG . 
D 3 NAP A 1 502 1 NAP NAP . 
E 3 NAP B 1 501 1 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 14.853 30.506 -22.739 1 116.67 ? PA NAP 502 A 1 
HETATM 2 O O1A NAP . . . D 3 15.524 30.967 -24.01 1 106.63 ? O1A NAP 502 A 1 
HETATM 3 O O2A NAP . . . D 3 13.753 29.513 -23.002 1 107.71 ? O2A NAP 502 A 1 
HETATM 4 O O5B NAP . . . D 3 15.896 29.841 -21.767 1 126.31 ? O5B NAP 502 A 1 
HETATM 5 C C5B NAP . . . D 3 15.834 28.474 -21.632 1 128.97 ? C5B NAP 502 A 1 
HETATM 6 C C4B NAP . . . D 3 17.22 27.978 -21.52 1 131.35 ? C4B NAP 502 A 1 
HETATM 7 O O4B NAP . . . D 3 17.37 27.527 -20.198 1 122.87 ? O4B NAP 502 A 1 
HETATM 8 C C3B NAP . . . D 3 17.483 26.885 -22.505 1 145.44 ? C3B NAP 502 A 1 
HETATM 9 O O3B NAP . . . D 3 18.316 27.327 -23.514 1 153.56 ? O3B NAP 502 A 1 
HETATM 10 C C2B NAP . . . D 3 18.127 25.824 -21.755 1 146.73 ? C2B NAP 502 A 1 
HETATM 11 O O2B NAP . . . D 3 19.433 25.695 -22.155 1 159.2 ? O2B NAP 502 A 1 
HETATM 12 C C1B NAP . . . D 3 18.039 26.338 -20.395 1 131.38 ? C1B NAP 502 A 1 
HETATM 13 N N9A NAP . . . D 3 17.309 25.279 -19.53 1 125.09 ? N9A NAP 502 A 1 
HETATM 14 C C8A NAP . . . D 3 15.917 24.943 -19.579 1 120.86 ? C8A NAP 502 A 1 
HETATM 15 N N7A NAP . . . D 3 15.731 23.955 -18.637 1 120.5 ? N7A NAP 502 A 1 
HETATM 16 C C5A NAP . . . D 3 16.879 23.707 -18.063 1 122.7 ? C5A NAP 502 A 1 
HETATM 17 C C6A NAP . . . D 3 17.154 22.771 -17.042 1 113.83 ? C6A NAP 502 A 1 
HETATM 18 N N6A NAP . . . D 3 16.136 21.945 -16.496 1 111.66 ? N6A NAP 502 A 1 
HETATM 19 N N1A NAP . . . D 3 18.458 22.71 -16.614 1 100.9 ? N1A NAP 502 A 1 
HETATM 20 C C2A NAP . . . D 3 19.423 23.494 -17.131 1 99.32 ? C2A NAP 502 A 1 
HETATM 21 N N3A NAP . . . D 3 19.115 24.371 -18.1 1 111.29 ? N3A NAP 502 A 1 
HETATM 22 C C4A NAP . . . D 3 17.855 24.461 -18.547 1 123.19 ? C4A NAP 502 A 1 
HETATM 23 O O3 NAP . . . D 3 14.207 31.708 -21.938 1 267.9 ? O3 NAP 502 A 1 
HETATM 24 P PN NAP . . . D 3 15.151 32.755 -21.246 1 104.9 ? PN NAP 502 A 1 
HETATM 25 O O1N NAP . . . D 3 15.154 34.017 -22.076 1 97.2 ? O1N NAP 502 A 1 
HETATM 26 O O2N NAP . . . D 3 16.554 32.194 -21.069 1 113.87 ? O2N NAP 502 A 1 
HETATM 27 O O5D NAP . . . D 3 14.548 32.969 -19.816 1 54.04 ? O5D NAP 502 A 1 
HETATM 28 C C5D NAP . . . D 3 14.32 31.836 -19.003 1 71.8 ? C5D NAP 502 A 1 
HETATM 29 C C4D NAP . . . D 3 13.49 32.098 -17.748 1 82.48 ? C4D NAP 502 A 1 
HETATM 30 O O4D NAP . . . D 3 13.824 33.341 -17.132 1 94.2 ? O4D NAP 502 A 1 
HETATM 31 C C3D NAP . . . D 3 12.038 32.073 -17.982 1 74.43 ? C3D NAP 502 A 1 
HETATM 32 O O3D NAP . . . D 3 11.452 31.53 -16.86 1 69.88 ? O3D NAP 502 A 1 
HETATM 33 C C2D NAP . . . D 3 11.68 33.474 -18.072 1 77.31 ? C2D NAP 502 A 1 
HETATM 34 O O2D NAP . . . D 3 10.382 33.688 -17.71 1 80.53 ? O2D NAP 502 A 1 
HETATM 35 C C1D NAP . . . D 3 12.564 33.955 -17.011 1 86.44 ? C1D NAP 502 A 1 
HETATM 36 N N1N NAP . . . D 3 12.689 35.41 -16.993 1 89.25 ? N1N NAP 502 A 1 
HETATM 37 C C2N NAP . . . D 3 12.32 36.027 -15.814 1 96.27 ? C2N NAP 502 A 1 
HETATM 38 C C3N NAP . . . D 3 12.424 37.428 -15.681 1 91.62 ? C3N NAP 502 A 1 
HETATM 39 C C7N NAP . . . D 3 11.981 38.053 -14.361 1 86.97 ? C7N NAP 502 A 1 
HETATM 40 O O7N NAP . . . D 3 12.538 39.049 -13.918 1 71.79 ? O7N NAP 502 A 1 
HETATM 41 N N7N NAP . . . D 3 10.87 37.466 -13.64 1 93.6 ? N7N NAP 502 A 1 
HETATM 42 C C4N NAP . . . D 3 12.908 38.17 -16.795 1 76.7 ? C4N NAP 502 A 1 
HETATM 43 C C5N NAP . . . D 3 13.277 37.477 -17.984 1 70.91 ? C5N NAP 502 A 1 
HETATM 44 C C6N NAP . . . D 3 13.159 36.079 -18.062 1 75.2 ? C6N NAP 502 A 1 
HETATM 45 P P2B NAP . . . D 3 20.219 24.346 -22.086 1 111.28 ? P2B NAP 502 A 1 
HETATM 46 O O1X NAP . . . D 3 21.154 24.251 -23.284 1 103.59 ? O1X NAP 502 A 1 
HETATM 47 O O2X NAP . . . D 3 19.222 23.21 -22.074 1 109.77 ? O2X NAP 502 A 1 
HETATM 48 O O3X NAP . . . D 3 21.066 24.312 -20.828 1 115.54 ? O3X NAP 502 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           48 
#