data_4GIB # _model_server_result.job_id 3wB_Ub69E5EhEsPUC-n7Tg _model_server_result.datetime_utc '2024-11-05 00:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 4GIB # _exptl.entry_id 4GIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.04 _cell.angle_gamma 90 _cell.entry_id 4GIB _cell.length_a 61.807 _cell.length_b 51.364 _cell.length_c 79.442 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 32 A ASP 8 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc2 A O ASP 34 A ASP 10 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A OE1 GLU 194 A GLU 170 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A OD1 ASP 195 A ASP 171 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A OD1 ASN 204 A ASN 180 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc6 A O MET 208 A MET 184 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc7 A OD1 ASN 223 A ASN 199 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc8 A OH TYR 244 A TYR 220 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc9 C NA NA . A NA 301 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc10 C NA NA . A NA 301 1_555 M O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc11 D NA NA . A NA 302 1_555 M O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc12 B OD2 ASP 32 B ASP 8 1_555 J NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc13 B O ASP 34 B ASP 10 1_555 J NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 B OE2 GLU 194 B GLU 170 1_555 J NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc15 B OD1 ASP 195 B ASP 171 1_555 J NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc16 B OD1 ASN 204 B ASN 180 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc17 B O MET 208 B MET 184 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc18 B OD1 ASN 223 B ASN 199 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc19 B OH TYR 244 B TYR 220 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc20 I NA NA . B NA 301 1_555 N O HOH . B HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc21 I NA NA . B NA 301 1_555 N O HOH . B HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GIB _atom_sites.fract_transf_matrix[1][1] 0.016179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00655 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 1 NA NA . D 2 NA A 1 302 3 NA NA . E 3 PO4 A 1 303 6 PO4 PO4 . F 3 PO4 A 1 304 7 PO4 PO4 . G 3 PO4 A 1 305 9 PO4 PO4 . H 4 GLY A 1 306 10 GLY GLY . I 2 NA B 1 301 2 NA NA . J 2 NA B 1 302 4 NA NA . K 3 PO4 B 1 303 5 PO4 PO4 . L 3 PO4 B 1 304 8 PO4 PO4 . M 5 HOH A 1 401 11 HOH HOH . M 5 HOH A 2 402 12 HOH HOH . M 5 HOH A 3 403 13 HOH HOH . M 5 HOH A 4 404 14 HOH HOH . M 5 HOH A 5 405 15 HOH HOH . M 5 HOH A 6 406 16 HOH HOH . M 5 HOH A 7 407 17 HOH HOH . M 5 HOH A 8 408 19 HOH HOH . M 5 HOH A 9 409 21 HOH HOH . M 5 HOH A 10 410 23 HOH HOH . M 5 HOH A 11 411 25 HOH HOH . M 5 HOH A 12 412 26 HOH HOH . M 5 HOH A 13 413 28 HOH HOH . M 5 HOH A 14 414 29 HOH HOH . M 5 HOH A 15 415 30 HOH HOH . M 5 HOH A 16 416 31 HOH HOH . M 5 HOH A 17 417 33 HOH HOH . M 5 HOH A 18 418 34 HOH HOH . M 5 HOH A 19 419 35 HOH HOH . M 5 HOH A 20 420 43 HOH HOH . M 5 HOH A 21 421 46 HOH HOH . M 5 HOH A 22 422 49 HOH HOH . M 5 HOH A 23 423 50 HOH HOH . M 5 HOH A 24 424 51 HOH HOH . M 5 HOH A 25 425 52 HOH HOH . M 5 HOH A 26 426 54 HOH HOH . M 5 HOH A 27 427 56 HOH HOH . M 5 HOH A 28 428 58 HOH HOH . M 5 HOH A 29 429 59 HOH HOH . M 5 HOH A 30 430 60 HOH HOH . M 5 HOH A 31 431 64 HOH HOH . M 5 HOH A 32 432 66 HOH HOH . M 5 HOH A 33 433 68 HOH HOH . M 5 HOH A 34 434 71 HOH HOH . M 5 HOH A 35 435 75 HOH HOH . M 5 HOH A 36 436 78 HOH HOH . M 5 HOH A 37 437 79 HOH HOH . M 5 HOH A 38 438 81 HOH HOH . M 5 HOH A 39 439 83 HOH HOH . M 5 HOH A 40 440 84 HOH HOH . M 5 HOH A 41 441 85 HOH HOH . M 5 HOH A 42 442 86 HOH HOH . M 5 HOH A 43 443 87 HOH HOH . M 5 HOH A 44 444 88 HOH HOH . M 5 HOH A 45 445 90 HOH HOH . M 5 HOH A 46 446 91 HOH HOH . M 5 HOH A 47 447 92 HOH HOH . M 5 HOH A 48 448 93 HOH HOH . M 5 HOH A 49 449 94 HOH HOH . M 5 HOH A 50 450 95 HOH HOH . M 5 HOH A 51 451 96 HOH HOH . M 5 HOH A 52 452 97 HOH HOH . M 5 HOH A 53 453 98 HOH HOH . M 5 HOH A 54 454 99 HOH HOH . M 5 HOH A 55 455 100 HOH HOH . M 5 HOH A 56 456 101 HOH HOH . M 5 HOH A 57 457 102 HOH HOH . M 5 HOH A 58 458 103 HOH HOH . M 5 HOH A 59 459 104 HOH HOH . M 5 HOH A 60 460 105 HOH HOH . M 5 HOH A 61 461 106 HOH HOH . M 5 HOH A 62 462 107 HOH HOH . M 5 HOH A 63 463 108 HOH HOH . M 5 HOH A 64 464 109 HOH HOH . M 5 HOH A 65 465 110 HOH HOH . M 5 HOH A 66 466 111 HOH HOH . M 5 HOH A 67 467 112 HOH HOH . M 5 HOH A 68 468 113 HOH HOH . M 5 HOH A 69 469 116 HOH HOH . M 5 HOH A 70 470 132 HOH HOH . M 5 HOH A 71 471 133 HOH HOH . M 5 HOH A 72 472 137 HOH HOH . M 5 HOH A 73 473 138 HOH HOH . M 5 HOH A 74 474 139 HOH HOH . M 5 HOH A 75 475 140 HOH HOH . M 5 HOH A 76 476 141 HOH HOH . M 5 HOH A 77 477 142 HOH HOH . M 5 HOH A 78 478 143 HOH HOH . M 5 HOH A 79 479 144 HOH HOH . M 5 HOH A 80 480 145 HOH HOH . M 5 HOH A 81 481 146 HOH HOH . M 5 HOH A 82 482 147 HOH HOH . M 5 HOH A 83 483 148 HOH HOH . M 5 HOH A 84 484 149 HOH HOH . M 5 HOH A 85 485 150 HOH HOH . M 5 HOH A 86 486 164 HOH HOH . M 5 HOH A 87 487 165 HOH HOH . M 5 HOH A 88 488 166 HOH HOH . M 5 HOH A 89 489 168 HOH HOH . M 5 HOH A 90 490 169 HOH HOH . M 5 HOH A 91 491 170 HOH HOH . M 5 HOH A 92 492 171 HOH HOH . M 5 HOH A 93 493 172 HOH HOH . M 5 HOH A 94 494 173 HOH HOH . M 5 HOH A 95 495 174 HOH HOH . M 5 HOH A 96 496 175 HOH HOH . M 5 HOH A 97 497 178 HOH HOH . N 5 HOH B 1 401 18 HOH HOH . N 5 HOH B 2 402 20 HOH HOH . N 5 HOH B 3 403 22 HOH HOH . N 5 HOH B 4 404 24 HOH HOH . N 5 HOH B 5 405 27 HOH HOH . N 5 HOH B 6 406 32 HOH HOH . N 5 HOH B 7 407 36 HOH HOH . N 5 HOH B 8 408 37 HOH HOH . N 5 HOH B 9 409 38 HOH HOH . N 5 HOH B 10 410 39 HOH HOH . N 5 HOH B 11 411 40 HOH HOH . N 5 HOH B 12 412 41 HOH HOH . N 5 HOH B 13 413 42 HOH HOH . N 5 HOH B 14 414 44 HOH HOH . N 5 HOH B 15 415 45 HOH HOH . N 5 HOH B 16 416 47 HOH HOH . N 5 HOH B 17 417 48 HOH HOH . N 5 HOH B 18 418 53 HOH HOH . N 5 HOH B 19 419 55 HOH HOH . N 5 HOH B 20 420 57 HOH HOH . N 5 HOH B 21 421 61 HOH HOH . N 5 HOH B 22 422 62 HOH HOH . N 5 HOH B 23 423 63 HOH HOH . N 5 HOH B 24 424 65 HOH HOH . N 5 HOH B 25 425 67 HOH HOH . N 5 HOH B 26 426 69 HOH HOH . N 5 HOH B 27 427 70 HOH HOH . N 5 HOH B 28 428 72 HOH HOH . N 5 HOH B 29 429 73 HOH HOH . N 5 HOH B 30 430 74 HOH HOH . N 5 HOH B 31 431 76 HOH HOH . N 5 HOH B 32 432 77 HOH HOH . N 5 HOH B 33 433 80 HOH HOH . N 5 HOH B 34 434 82 HOH HOH . N 5 HOH B 35 435 89 HOH HOH . N 5 HOH B 36 436 114 HOH HOH . N 5 HOH B 37 437 115 HOH HOH . N 5 HOH B 38 438 117 HOH HOH . N 5 HOH B 39 439 118 HOH HOH . N 5 HOH B 40 440 119 HOH HOH . N 5 HOH B 41 441 120 HOH HOH . N 5 HOH B 42 442 121 HOH HOH . N 5 HOH B 43 443 122 HOH HOH . N 5 HOH B 44 444 123 HOH HOH . N 5 HOH B 45 445 124 HOH HOH . N 5 HOH B 46 446 125 HOH HOH . N 5 HOH B 47 447 126 HOH HOH . N 5 HOH B 48 448 127 HOH HOH . N 5 HOH B 49 449 128 HOH HOH . N 5 HOH B 50 450 129 HOH HOH . N 5 HOH B 51 451 130 HOH HOH . N 5 HOH B 52 452 131 HOH HOH . N 5 HOH B 53 453 134 HOH HOH . N 5 HOH B 54 454 135 HOH HOH . N 5 HOH B 55 455 136 HOH HOH . N 5 HOH B 56 456 151 HOH HOH . N 5 HOH B 57 457 152 HOH HOH . N 5 HOH B 58 458 153 HOH HOH . N 5 HOH B 59 459 154 HOH HOH . N 5 HOH B 60 460 155 HOH HOH . N 5 HOH B 61 461 156 HOH HOH . N 5 HOH B 62 462 157 HOH HOH . N 5 HOH B 63 463 158 HOH HOH . N 5 HOH B 64 464 159 HOH HOH . N 5 HOH B 65 465 160 HOH HOH . N 5 HOH B 66 466 161 HOH HOH . N 5 HOH B 67 467 162 HOH HOH . N 5 HOH B 68 468 163 HOH HOH . N 5 HOH B 69 469 167 HOH HOH . N 5 HOH B 70 470 176 HOH HOH . N 5 HOH B 71 471 177 HOH HOH . N 5 HOH B 72 472 179 HOH HOH . N 5 HOH B 73 473 180 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x -20.784 _atom_site.Cartn_y 20.278 _atom_site.Cartn_z 14.729 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 21.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #