data_4GIL # _model_server_result.job_id wA2u9dverAmiBFEeTmWd2Q _model_server_result.datetime_utc '2024-11-27 02:48:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 4GIL # _exptl.entry_id 4GIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GIL _cell.length_a 61.472 _cell.length_b 77.116 _cell.length_c 200.219 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 189 A LYS 166 1_555 E C1' KPS . A KPS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.555 ? covale ? covale2 B NZ LYS 189 B LYS 166 1_555 F C1' KPS . B KPS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale3 C NZ LYS 189 C LYS 166 1_555 H C1' KPS . C KPS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? metalc ? metalc1 A OD1 ASP 168 A ASP 145 1_555 D MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 D MN MN . A MN 400 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 D MN MN . A MN 400 1_555 J O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 D MN MN . A MN 400 1_555 J O HOH . A HOH 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 D MN MN . A MN 400 1_555 L O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 D MN MN . A MN 400 1_555 L O HOH . C HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 J O HOH . A HOH 503 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 J O HOH . A HOH 571 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 J O HOH . A HOH 589 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc10 B OD1 ASP 168 B ASP 145 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc11 G MN MN . B MN 402 1_555 K O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc12 G MN MN . B MN 402 1_555 K O HOH . B HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc13 K O HOH . B HOH 501 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc14 K O HOH . B HOH 515 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc15 C OD1 ASP 168 C ASP 145 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc16 I MN MN . C MN 402 1_555 L O HOH . C HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc17 I MN MN . C MN 402 1_555 L O HOH . C HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc18 I MN MN . C MN 402 1_555 L O HOH . C HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GIL _atom_sites.fract_transf_matrix[1][1] 0.016268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 400 400 MN MN . E 3 KPS A 1 401 401 KPS KPS . F 3 KPS B 1 401 401 KPS KPS . G 2 MN B 1 402 400 MN MN . H 3 KPS C 1 401 401 KPS KPS . I 2 MN C 1 402 400 MN MN . J 4 HOH A 1 501 1 HOH HOH . J 4 HOH A 2 502 2 HOH HOH . J 4 HOH A 3 503 3 HOH HOH . J 4 HOH A 4 504 5 HOH HOH . J 4 HOH A 5 505 7 HOH HOH . J 4 HOH A 6 506 8 HOH HOH . J 4 HOH A 7 507 10 HOH HOH . J 4 HOH A 8 508 12 HOH HOH . J 4 HOH A 9 509 13 HOH HOH . J 4 HOH A 10 510 14 HOH HOH . J 4 HOH A 11 511 17 HOH HOH . J 4 HOH A 12 512 18 HOH HOH . J 4 HOH A 13 513 22 HOH HOH . J 4 HOH A 14 514 23 HOH HOH . J 4 HOH A 15 515 24 HOH HOH . J 4 HOH A 16 516 25 HOH HOH . J 4 HOH A 17 517 29 HOH HOH . J 4 HOH A 18 518 35 HOH HOH . J 4 HOH A 19 519 37 HOH HOH . J 4 HOH A 20 520 38 HOH HOH . J 4 HOH A 21 521 40 HOH HOH . J 4 HOH A 22 522 41 HOH HOH . J 4 HOH A 23 523 42 HOH HOH . J 4 HOH A 24 524 44 HOH HOH . J 4 HOH A 25 525 45 HOH HOH . J 4 HOH A 26 526 49 HOH HOH . J 4 HOH A 27 527 50 HOH HOH . J 4 HOH A 28 528 51 HOH HOH . J 4 HOH A 29 529 52 HOH HOH . J 4 HOH A 30 530 54 HOH HOH . J 4 HOH A 31 531 56 HOH HOH . J 4 HOH A 32 532 57 HOH HOH . J 4 HOH A 33 533 58 HOH HOH . J 4 HOH A 34 534 64 HOH HOH . J 4 HOH A 35 535 65 HOH HOH . J 4 HOH A 36 536 68 HOH HOH . J 4 HOH A 37 537 73 HOH HOH . J 4 HOH A 38 538 74 HOH HOH . J 4 HOH A 39 539 75 HOH HOH . J 4 HOH A 40 540 78 HOH HOH . J 4 HOH A 41 541 79 HOH HOH . J 4 HOH A 42 542 80 HOH HOH . J 4 HOH A 43 543 85 HOH HOH . J 4 HOH A 44 544 86 HOH HOH . J 4 HOH A 45 545 88 HOH HOH . J 4 HOH A 46 546 89 HOH HOH . J 4 HOH A 47 547 90 HOH HOH . J 4 HOH A 48 548 91 HOH HOH . J 4 HOH A 49 549 92 HOH HOH . J 4 HOH A 50 550 97 HOH HOH . J 4 HOH A 51 551 99 HOH HOH . J 4 HOH A 52 552 100 HOH HOH . J 4 HOH A 53 553 101 HOH HOH . J 4 HOH A 54 554 103 HOH HOH . J 4 HOH A 55 555 104 HOH HOH . J 4 HOH A 56 556 106 HOH HOH . J 4 HOH A 57 557 107 HOH HOH . J 4 HOH A 58 558 108 HOH HOH . J 4 HOH A 59 559 109 HOH HOH . J 4 HOH A 60 560 112 HOH HOH . J 4 HOH A 61 561 113 HOH HOH . J 4 HOH A 62 562 116 HOH HOH . J 4 HOH A 63 563 118 HOH HOH . J 4 HOH A 64 564 121 HOH HOH . J 4 HOH A 65 565 122 HOH HOH . J 4 HOH A 66 566 123 HOH HOH . J 4 HOH A 67 567 124 HOH HOH . J 4 HOH A 68 568 130 HOH HOH . J 4 HOH A 69 569 132 HOH HOH . J 4 HOH A 70 570 136 HOH HOH . J 4 HOH A 71 571 137 HOH HOH . J 4 HOH A 72 572 142 HOH HOH . J 4 HOH A 73 573 145 HOH HOH . J 4 HOH A 74 574 147 HOH HOH . J 4 HOH A 75 575 151 HOH HOH . J 4 HOH A 76 576 152 HOH HOH . J 4 HOH A 77 577 154 HOH HOH . J 4 HOH A 78 578 157 HOH HOH . J 4 HOH A 79 579 158 HOH HOH . J 4 HOH A 80 580 161 HOH HOH . J 4 HOH A 81 581 162 HOH HOH . J 4 HOH A 82 582 164 HOH HOH . J 4 HOH A 83 583 171 HOH HOH . J 4 HOH A 84 584 172 HOH HOH . J 4 HOH A 85 585 176 HOH HOH . J 4 HOH A 86 586 179 HOH HOH . J 4 HOH A 87 587 180 HOH HOH . J 4 HOH A 88 588 187 HOH HOH . J 4 HOH A 89 589 189 HOH HOH . J 4 HOH A 90 590 190 HOH HOH . J 4 HOH A 91 591 192 HOH HOH . J 4 HOH A 92 592 193 HOH HOH . J 4 HOH A 93 593 198 HOH HOH . J 4 HOH A 94 594 199 HOH HOH . J 4 HOH A 95 595 200 HOH HOH . J 4 HOH A 96 596 203 HOH HOH . J 4 HOH A 97 597 204 HOH HOH . J 4 HOH A 98 598 210 HOH HOH . J 4 HOH A 99 599 211 HOH HOH . J 4 HOH A 100 600 216 HOH HOH . J 4 HOH A 101 601 217 HOH HOH . J 4 HOH A 102 602 225 HOH HOH . K 4 HOH B 1 501 9 HOH HOH . K 4 HOH B 2 502 11 HOH HOH . K 4 HOH B 3 503 15 HOH HOH . K 4 HOH B 4 504 16 HOH HOH . K 4 HOH B 5 505 19 HOH HOH . K 4 HOH B 6 506 21 HOH HOH . K 4 HOH B 7 507 26 HOH HOH . K 4 HOH B 8 508 28 HOH HOH . K 4 HOH B 9 509 30 HOH HOH . K 4 HOH B 10 510 31 HOH HOH . K 4 HOH B 11 511 32 HOH HOH . K 4 HOH B 12 512 33 HOH HOH . K 4 HOH B 13 513 34 HOH HOH . K 4 HOH B 14 514 39 HOH HOH . K 4 HOH B 15 515 515 HOH HOH . K 4 HOH B 16 516 55 HOH HOH . K 4 HOH B 17 517 61 HOH HOH . K 4 HOH B 18 518 66 HOH HOH . K 4 HOH B 19 519 67 HOH HOH . K 4 HOH B 20 520 69 HOH HOH . K 4 HOH B 21 521 71 HOH HOH . K 4 HOH B 22 522 76 HOH HOH . K 4 HOH B 23 523 77 HOH HOH . K 4 HOH B 24 524 82 HOH HOH . K 4 HOH B 25 525 83 HOH HOH . K 4 HOH B 26 526 84 HOH HOH . K 4 HOH B 27 527 87 HOH HOH . K 4 HOH B 28 528 94 HOH HOH . K 4 HOH B 29 529 95 HOH HOH . K 4 HOH B 30 530 105 HOH HOH . K 4 HOH B 31 531 110 HOH HOH . K 4 HOH B 32 532 115 HOH HOH . K 4 HOH B 33 533 119 HOH HOH . K 4 HOH B 34 534 120 HOH HOH . K 4 HOH B 35 535 127 HOH HOH . K 4 HOH B 36 536 131 HOH HOH . K 4 HOH B 37 537 138 HOH HOH . K 4 HOH B 38 538 140 HOH HOH . K 4 HOH B 39 539 141 HOH HOH . K 4 HOH B 40 540 146 HOH HOH . K 4 HOH B 41 541 148 HOH HOH . K 4 HOH B 42 542 167 HOH HOH . K 4 HOH B 43 543 168 HOH HOH . K 4 HOH B 44 544 169 HOH HOH . K 4 HOH B 45 545 174 HOH HOH . K 4 HOH B 46 546 175 HOH HOH . K 4 HOH B 47 547 185 HOH HOH . K 4 HOH B 48 548 188 HOH HOH . K 4 HOH B 49 549 191 HOH HOH . K 4 HOH B 50 550 194 HOH HOH . K 4 HOH B 51 551 197 HOH HOH . K 4 HOH B 52 552 206 HOH HOH . K 4 HOH B 53 553 207 HOH HOH . K 4 HOH B 54 554 208 HOH HOH . K 4 HOH B 55 555 209 HOH HOH . K 4 HOH B 56 556 214 HOH HOH . K 4 HOH B 57 557 218 HOH HOH . K 4 HOH B 58 558 219 HOH HOH . K 4 HOH B 59 559 224 HOH HOH . K 4 HOH B 60 560 226 HOH HOH . K 4 HOH B 61 561 227 HOH HOH . L 4 HOH C 1 501 4 HOH HOH . L 4 HOH C 2 502 6 HOH HOH . L 4 HOH C 3 503 20 HOH HOH . L 4 HOH C 4 504 36 HOH HOH . L 4 HOH C 5 505 43 HOH HOH . L 4 HOH C 6 506 47 HOH HOH . L 4 HOH C 7 507 53 HOH HOH . L 4 HOH C 8 508 60 HOH HOH . L 4 HOH C 9 509 63 HOH HOH . L 4 HOH C 10 510 70 HOH HOH . L 4 HOH C 11 511 72 HOH HOH . L 4 HOH C 12 512 93 HOH HOH . L 4 HOH C 13 513 96 HOH HOH . L 4 HOH C 14 514 98 HOH HOH . L 4 HOH C 15 515 102 HOH HOH . L 4 HOH C 16 516 111 HOH HOH . L 4 HOH C 17 517 114 HOH HOH . L 4 HOH C 18 518 125 HOH HOH . L 4 HOH C 19 519 126 HOH HOH . L 4 HOH C 20 520 129 HOH HOH . L 4 HOH C 21 521 134 HOH HOH . L 4 HOH C 22 522 135 HOH HOH . L 4 HOH C 23 523 139 HOH HOH . L 4 HOH C 24 524 149 HOH HOH . L 4 HOH C 25 525 155 HOH HOH . L 4 HOH C 26 526 156 HOH HOH . L 4 HOH C 27 527 165 HOH HOH . L 4 HOH C 28 528 166 HOH HOH . L 4 HOH C 29 529 170 HOH HOH . L 4 HOH C 30 530 173 HOH HOH . L 4 HOH C 31 531 177 HOH HOH . L 4 HOH C 32 532 195 HOH HOH . L 4 HOH C 33 533 196 HOH HOH . L 4 HOH C 34 534 201 HOH HOH . L 4 HOH C 35 535 202 HOH HOH . L 4 HOH C 36 536 205 HOH HOH . L 4 HOH C 37 537 213 HOH HOH . L 4 HOH C 38 538 215 HOH HOH . L 4 HOH C 39 539 220 HOH HOH . L 4 HOH C 40 540 221 HOH HOH . L 4 HOH C 41 541 541 HOH HOH . L 4 HOH C 42 542 223 HOH HOH . L 4 HOH C 43 543 228 HOH HOH . L 4 HOH C 44 544 229 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.344 _atom_site.Cartn_y -13.937 _atom_site.Cartn_z -28.614 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #