data_4GIV # _model_server_result.job_id ZHvRulMYrfFx51Tz8GIK-Q _model_server_result.datetime_utc '2024-11-24 17:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4giv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 4GIV # _exptl.entry_id 4GIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(pyridin-3-yl)propyl (2S)-1-[(3-nitrophenyl)sulfonyl]piperidine-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.52 _cell.angle_gamma 90 _cell.entry_id 4GIV _cell.length_a 84.42 _cell.length_b 32.5 _cell.length_c 151.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C20 H23 N3 O6 S' _chem_comp.formula_weight 433.478 _chem_comp.id 4GI _chem_comp.mon_nstd_flag . _chem_comp.name '3-(pyridin-3-yl)propyl (2S)-1-[(3-nitrophenyl)sulfonyl]piperidine-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 4GI sing 1 n n C13 C12 4GI sing 2 n n C12 O3 4GI sing 3 n n O3 C11 4GI sing 4 n n O2 C11 4GI doub 5 n n C6 C7 4GI sing 6 n n C6 N 4GI sing 7 n n C11 C10 4GI sing 8 n n C2 C1 4GI doub 9 n y C2 C3 4GI sing 10 n y C7 C8 4GI sing 11 n n C1 C 4GI sing 12 n y C3 C4 4GI doub 13 n y C8 C9 4GI sing 14 n n N C10 4GI sing 15 n n N S 4GI sing 16 n n C10 C9 4GI sing 17 n n C C5 4GI doub 18 n y C4 C5 4GI sing 19 n y C4 S 4GI sing 20 n n S O 4GI doub 21 n n S O1 4GI doub 22 n n C H1 4GI sing 23 n n C1 H2 4GI sing 24 n n C3 H4 4GI sing 25 n n C5 H5 4GI sing 26 n n C6 H6 4GI sing 27 n n C6 H7 4GI sing 28 n n C7 H8 4GI sing 29 n n C7 H9 4GI sing 30 n n C8 H10 4GI sing 31 n n C8 H11 4GI sing 32 n n C9 H12 4GI sing 33 n n C9 H13 4GI sing 34 n n C10 H14 4GI sing 35 n n C12 H15 4GI sing 36 n n C12 H16 4GI sing 37 n n C13 H17 4GI sing 38 n n C13 H18 4GI sing 39 n n C14 H19 4GI sing 40 n n C14 H20 4GI sing 41 n n C14 C15 4GI sing 42 n n C15 C16 4GI sing 43 n y C16 C17 4GI doub 44 n y C17 C18 4GI sing 45 n y C18 N19 4GI doub 46 n y N19 C20 4GI sing 47 n y C20 C15 4GI doub 48 n y C16 H21 4GI sing 49 n n C17 H22 4GI sing 50 n n C18 H23 4GI sing 51 n n C20 H25 4GI sing 52 n n C2 N1 4GI sing 53 n n N1 O4 4GI sing 54 n n N1 O5 4GI doub 55 n n # _atom_sites.entry_id 4GIV _atom_sites.fract_transf_matrix[1][1] 0.011846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001564 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4GI A 1 201 300 4GI 4GI . D 3 FMT A 1 202 1 FMT FMT . E 3 FMT A 1 203 2 FMT FMT . F 2 4GI B 1 300 300 4GI 4GI . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 4 HOH HOH . G 4 HOH A 5 305 5 HOH HOH . G 4 HOH A 6 306 6 HOH HOH . G 4 HOH A 7 307 7 HOH HOH . G 4 HOH A 8 308 8 HOH HOH . G 4 HOH A 9 309 9 HOH HOH . G 4 HOH A 10 310 10 HOH HOH . G 4 HOH A 11 311 11 HOH HOH . G 4 HOH A 12 312 12 HOH HOH . G 4 HOH A 13 313 13 HOH HOH . G 4 HOH A 14 314 14 HOH HOH . G 4 HOH A 15 315 15 HOH HOH . G 4 HOH A 16 316 16 HOH HOH . G 4 HOH A 17 317 17 HOH HOH . G 4 HOH A 18 318 18 HOH HOH . G 4 HOH A 19 319 19 HOH HOH . G 4 HOH A 20 320 20 HOH HOH . G 4 HOH A 21 321 21 HOH HOH . G 4 HOH A 22 322 22 HOH HOH . G 4 HOH A 23 323 23 HOH HOH . G 4 HOH A 24 324 24 HOH HOH . G 4 HOH A 25 325 25 HOH HOH . G 4 HOH A 26 326 26 HOH HOH . G 4 HOH A 27 327 27 HOH HOH . G 4 HOH A 28 328 28 HOH HOH . G 4 HOH A 29 329 29 HOH HOH . G 4 HOH A 30 330 30 HOH HOH . G 4 HOH A 31 331 31 HOH HOH . G 4 HOH A 32 332 32 HOH HOH . G 4 HOH A 33 333 33 HOH HOH . G 4 HOH A 34 334 34 HOH HOH . G 4 HOH A 35 335 35 HOH HOH . G 4 HOH A 36 336 36 HOH HOH . G 4 HOH A 37 337 37 HOH HOH . G 4 HOH A 38 338 38 HOH HOH . G 4 HOH A 39 339 39 HOH HOH . G 4 HOH A 40 340 40 HOH HOH . G 4 HOH A 41 341 41 HOH HOH . G 4 HOH A 42 342 42 HOH HOH . G 4 HOH A 43 343 43 HOH HOH . G 4 HOH A 44 344 44 HOH HOH . G 4 HOH A 45 345 45 HOH HOH . G 4 HOH A 46 346 46 HOH HOH . G 4 HOH A 47 347 47 HOH HOH . G 4 HOH A 48 348 48 HOH HOH . G 4 HOH A 49 349 49 HOH HOH . G 4 HOH A 50 350 51 HOH HOH . G 4 HOH A 51 351 52 HOH HOH . G 4 HOH A 52 352 54 HOH HOH . G 4 HOH A 53 353 55 HOH HOH . G 4 HOH A 54 354 56 HOH HOH . G 4 HOH A 55 355 57 HOH HOH . G 4 HOH A 56 356 58 HOH HOH . G 4 HOH A 57 357 59 HOH HOH . G 4 HOH A 58 358 60 HOH HOH . G 4 HOH A 59 359 61 HOH HOH . G 4 HOH A 60 360 62 HOH HOH . G 4 HOH A 61 361 63 HOH HOH . G 4 HOH A 62 362 64 HOH HOH . G 4 HOH A 63 363 65 HOH HOH . G 4 HOH A 64 364 66 HOH HOH . G 4 HOH A 65 365 67 HOH HOH . G 4 HOH A 66 366 68 HOH HOH . G 4 HOH A 67 367 70 HOH HOH . G 4 HOH A 68 368 71 HOH HOH . G 4 HOH A 69 369 72 HOH HOH . G 4 HOH A 70 370 73 HOH HOH . G 4 HOH A 71 371 75 HOH HOH . G 4 HOH A 72 372 76 HOH HOH . G 4 HOH A 73 373 77 HOH HOH . G 4 HOH A 74 374 80 HOH HOH . G 4 HOH A 75 375 81 HOH HOH . G 4 HOH A 76 376 82 HOH HOH . G 4 HOH A 77 377 84 HOH HOH . H 4 HOH B 1 401 50 HOH HOH . H 4 HOH B 2 402 53 HOH HOH . H 4 HOH B 3 403 69 HOH HOH . H 4 HOH B 4 404 74 HOH HOH . H 4 HOH B 5 405 78 HOH HOH . H 4 HOH B 6 406 79 HOH HOH . H 4 HOH B 7 407 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 4GI . . . F 2 -12.066 14.123 37.456 0.6 63.41 ? C 4GI 300 B 1 HETATM 2 N N 4GI . . . F 2 -11.629 9.471 36.494 0.6 65.31 ? N 4GI 300 B 1 HETATM 3 O O 4GI . . . F 2 -11.751 11.055 34.644 0.6 64.2 ? O 4GI 300 B 1 HETATM 4 S S 4GI . . . F 2 -12.409 10.61 35.83 0.6 66.76 ? S 4GI 300 B 1 HETATM 5 C C1 4GI . . . F 2 -13.075 14.09 38.417 0.6 60.66 ? C1 4GI 300 B 1 HETATM 6 O O1 4GI . . . F 2 -13.698 10.115 35.46 0.6 65 ? O1 4GI 300 B 1 HETATM 7 C C2 4GI . . . F 2 -13.861 12.952 38.571 0.6 60.8 ? C2 4GI 300 B 1 HETATM 8 O O2 4GI . . . F 2 -11.281 6.018 37.074 0.6 59.7 ? O2 4GI 300 B 1 HETATM 9 C C3 4GI . . . F 2 -13.642 11.851 37.754 0.6 60.8 ? C3 4GI 300 B 1 HETATM 10 O O3 4GI . . . F 2 -12.158 7.393 38.69 0.6 62.55 ? O3 4GI 300 B 1 HETATM 11 C C4 4GI . . . F 2 -12.633 11.874 36.786 0.6 64.35 ? C4 4GI 300 B 1 HETATM 12 C C5 4GI . . . F 2 -11.845 13.017 36.635 0.6 64.22 ? C5 4GI 300 B 1 HETATM 13 C C6 4GI . . . F 2 -10.247 9.741 36.905 0.6 65.85 ? C6 4GI 300 B 1 HETATM 14 C C7 4GI . . . F 2 -9.264 9.047 35.963 0.6 64.47 ? C7 4GI 300 B 1 HETATM 15 C C8 4GI . . . F 2 -9.661 7.626 35.586 0.6 64.64 ? C8 4GI 300 B 1 HETATM 16 C C9 4GI . . . F 2 -11.103 7.607 35.084 0.6 63.51 ? C9 4GI 300 B 1 HETATM 17 C C10 4GI . . . F 2 -12.016 8.08 36.199 0.6 63.24 ? C10 4GI 300 B 1 HETATM 18 C C11 4GI . . . F 2 -11.788 7.102 37.317 0.6 63.67 ? C11 4GI 300 B 1 HETATM 19 C C12 4GI . . . F 2 -11.858 6.446 39.706 0.6 60.19 ? C12 4GI 300 B 1 HETATM 20 C C13 4GI . . . F 2 -10.662 6.981 40.479 0.6 58.96 ? C13 4GI 300 B 1 HETATM 21 C C14 4GI . . . F 2 -9.324 6.513 39.915 0.6 56.83 ? C14 4GI 300 B 1 HETATM 22 C C15 4GI . . . F 2 -8.277 7.588 40.105 0.6 52.95 ? C15 4GI 300 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #