data_4GJB # _model_server_result.job_id iEnaWHTceGNn7fFi2l9XFw _model_server_result.datetime_utc '2024-11-16 23:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 4GJB # _exptl.entry_id 4GJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GJB _cell.length_a 67.263 _cell.length_b 112.072 _cell.length_c 126.829 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 F C1 NAG . B NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 286 n n C1 O1 NAG sing 287 n n C1 O5 NAG sing 288 n n C1 H1 NAG sing 289 n n C2 C3 NAG sing 290 n n C2 N2 NAG sing 291 n n C2 H2 NAG sing 292 n n C3 C4 NAG sing 293 n n C3 O3 NAG sing 294 n n C3 H3 NAG sing 295 n n C4 C5 NAG sing 296 n n C4 O4 NAG sing 297 n n C4 H4 NAG sing 298 n n C5 C6 NAG sing 299 n n C5 O5 NAG sing 300 n n C5 H5 NAG sing 301 n n C6 O6 NAG sing 302 n n C6 H61 NAG sing 303 n n C6 H62 NAG sing 304 n n C7 C8 NAG sing 305 n n C7 N2 NAG sing 306 n n C7 O7 NAG doub 307 n n C8 H81 NAG sing 308 n n C8 H82 NAG sing 309 n n C8 H83 NAG sing 310 n n N2 HN2 NAG sing 311 n n O1 HO1 NAG sing 312 n n O3 HO3 NAG sing 313 n n O4 HO4 NAG sing 314 n n O6 HO6 NAG sing 315 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4GJB _atom_sites.fract_transf_matrix[1][1] 0.014867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1000 1000 NAG NAG . D 3 0ME A 1 1001 1001 0ME LI1 . E 4 SO4 A 1 1002 1002 SO4 SO4 . F 2 NAG B 1 1000 1000 NAG NAG . G 3 0ME B 1 1001 1001 0ME LI1 . H 4 SO4 B 1 1002 1002 SO4 SO4 . I 5 HOH A 1 1101 1 HOH HOH . I 5 HOH A 2 1102 3 HOH HOH . I 5 HOH A 3 1103 5 HOH HOH . I 5 HOH A 4 1104 6 HOH HOH . I 5 HOH A 5 1105 7 HOH HOH . I 5 HOH A 6 1106 9 HOH HOH . I 5 HOH A 7 1107 10 HOH HOH . I 5 HOH A 8 1108 11 HOH HOH . I 5 HOH A 9 1109 12 HOH HOH . I 5 HOH A 10 1110 13 HOH HOH . I 5 HOH A 11 1111 14 HOH HOH . I 5 HOH A 12 1112 15 HOH HOH . I 5 HOH A 13 1113 17 HOH HOH . I 5 HOH A 14 1114 18 HOH HOH . I 5 HOH A 15 1115 19 HOH HOH . I 5 HOH A 16 1116 21 HOH HOH . I 5 HOH A 17 1117 23 HOH HOH . I 5 HOH A 18 1118 24 HOH HOH . I 5 HOH A 19 1119 27 HOH HOH . I 5 HOH A 20 1120 28 HOH HOH . I 5 HOH A 21 1121 29 HOH HOH . I 5 HOH A 22 1122 30 HOH HOH . I 5 HOH A 23 1123 32 HOH HOH . I 5 HOH A 24 1124 34 HOH HOH . I 5 HOH A 25 1125 35 HOH HOH . I 5 HOH A 26 1126 36 HOH HOH . I 5 HOH A 27 1127 38 HOH HOH . I 5 HOH A 28 1128 39 HOH HOH . I 5 HOH A 29 1129 40 HOH HOH . I 5 HOH A 30 1130 41 HOH HOH . I 5 HOH A 31 1131 42 HOH HOH . I 5 HOH A 32 1132 47 HOH HOH . I 5 HOH A 33 1133 48 HOH HOH . I 5 HOH A 34 1134 49 HOH HOH . I 5 HOH A 35 1135 50 HOH HOH . I 5 HOH A 36 1136 51 HOH HOH . I 5 HOH A 37 1137 52 HOH HOH . I 5 HOH A 38 1138 54 HOH HOH . I 5 HOH A 39 1139 55 HOH HOH . I 5 HOH A 40 1140 56 HOH HOH . I 5 HOH A 41 1141 57 HOH HOH . I 5 HOH A 42 1142 58 HOH HOH . I 5 HOH A 43 1143 60 HOH HOH . I 5 HOH A 44 1144 61 HOH HOH . I 5 HOH A 45 1145 62 HOH HOH . I 5 HOH A 46 1146 65 HOH HOH . I 5 HOH A 47 1147 66 HOH HOH . I 5 HOH A 48 1148 67 HOH HOH . I 5 HOH A 49 1149 68 HOH HOH . I 5 HOH A 50 1150 69 HOH HOH . I 5 HOH A 51 1151 71 HOH HOH . I 5 HOH A 52 1152 73 HOH HOH . I 5 HOH A 53 1153 74 HOH HOH . I 5 HOH A 54 1154 76 HOH HOH . I 5 HOH A 55 1155 77 HOH HOH . I 5 HOH A 56 1156 78 HOH HOH . I 5 HOH A 57 1157 80 HOH HOH . I 5 HOH A 58 1158 81 HOH HOH . I 5 HOH A 59 1159 82 HOH HOH . I 5 HOH A 60 1160 83 HOH HOH . I 5 HOH A 61 1161 86 HOH HOH . I 5 HOH A 62 1162 89 HOH HOH . I 5 HOH A 63 1163 90 HOH HOH . I 5 HOH A 64 1164 92 HOH HOH . I 5 HOH A 65 1165 93 HOH HOH . I 5 HOH A 66 1166 94 HOH HOH . I 5 HOH A 67 1167 95 HOH HOH . I 5 HOH A 68 1168 97 HOH HOH . I 5 HOH A 69 1169 99 HOH HOH . I 5 HOH A 70 1170 100 HOH HOH . I 5 HOH A 71 1171 101 HOH HOH . I 5 HOH A 72 1172 104 HOH HOH . I 5 HOH A 73 1173 105 HOH HOH . I 5 HOH A 74 1174 106 HOH HOH . I 5 HOH A 75 1175 108 HOH HOH . I 5 HOH A 76 1176 110 HOH HOH . I 5 HOH A 77 1177 111 HOH HOH . I 5 HOH A 78 1178 112 HOH HOH . I 5 HOH A 79 1179 113 HOH HOH . I 5 HOH A 80 1180 114 HOH HOH . I 5 HOH A 81 1181 115 HOH HOH . I 5 HOH A 82 1182 118 HOH HOH . I 5 HOH A 83 1183 121 HOH HOH . I 5 HOH A 84 1184 122 HOH HOH . I 5 HOH A 85 1185 123 HOH HOH . I 5 HOH A 86 1186 124 HOH HOH . I 5 HOH A 87 1187 125 HOH HOH . I 5 HOH A 88 1188 127 HOH HOH . I 5 HOH A 89 1189 129 HOH HOH . I 5 HOH A 90 1190 135 HOH HOH . I 5 HOH A 91 1191 136 HOH HOH . I 5 HOH A 92 1192 137 HOH HOH . I 5 HOH A 93 1193 139 HOH HOH . I 5 HOH A 94 1194 142 HOH HOH . I 5 HOH A 95 1195 144 HOH HOH . I 5 HOH A 96 1196 146 HOH HOH . I 5 HOH A 97 1197 147 HOH HOH . I 5 HOH A 98 1198 148 HOH HOH . I 5 HOH A 99 1199 149 HOH HOH . I 5 HOH A 100 1200 150 HOH HOH . I 5 HOH A 101 1201 151 HOH HOH . I 5 HOH A 102 1202 152 HOH HOH . I 5 HOH A 103 1203 153 HOH HOH . I 5 HOH A 104 1204 157 HOH HOH . I 5 HOH A 105 1205 161 HOH HOH . I 5 HOH A 106 1206 162 HOH HOH . I 5 HOH A 107 1207 165 HOH HOH . I 5 HOH A 108 1208 166 HOH HOH . I 5 HOH A 109 1209 169 HOH HOH . I 5 HOH A 110 1210 173 HOH HOH . I 5 HOH A 111 1211 174 HOH HOH . I 5 HOH A 112 1212 178 HOH HOH . I 5 HOH A 113 1213 179 HOH HOH . I 5 HOH A 114 1214 180 HOH HOH . I 5 HOH A 115 1215 181 HOH HOH . I 5 HOH A 116 1216 183 HOH HOH . J 5 HOH B 1 1101 2 HOH HOH . J 5 HOH B 2 1102 4 HOH HOH . J 5 HOH B 3 1103 8 HOH HOH . J 5 HOH B 4 1104 16 HOH HOH . J 5 HOH B 5 1105 20 HOH HOH . J 5 HOH B 6 1106 22 HOH HOH . J 5 HOH B 7 1107 25 HOH HOH . J 5 HOH B 8 1108 26 HOH HOH . J 5 HOH B 9 1109 31 HOH HOH . J 5 HOH B 10 1110 33 HOH HOH . J 5 HOH B 11 1111 37 HOH HOH . J 5 HOH B 12 1112 43 HOH HOH . J 5 HOH B 13 1113 44 HOH HOH . J 5 HOH B 14 1114 45 HOH HOH . J 5 HOH B 15 1115 46 HOH HOH . J 5 HOH B 16 1116 53 HOH HOH . J 5 HOH B 17 1117 59 HOH HOH . J 5 HOH B 18 1118 63 HOH HOH . J 5 HOH B 19 1119 64 HOH HOH . J 5 HOH B 20 1120 70 HOH HOH . J 5 HOH B 21 1121 72 HOH HOH . J 5 HOH B 22 1122 75 HOH HOH . J 5 HOH B 23 1123 79 HOH HOH . J 5 HOH B 24 1124 84 HOH HOH . J 5 HOH B 25 1125 85 HOH HOH . J 5 HOH B 26 1126 87 HOH HOH . J 5 HOH B 27 1127 88 HOH HOH . J 5 HOH B 28 1128 91 HOH HOH . J 5 HOH B 29 1129 96 HOH HOH . J 5 HOH B 30 1130 98 HOH HOH . J 5 HOH B 31 1131 102 HOH HOH . J 5 HOH B 32 1132 103 HOH HOH . J 5 HOH B 33 1133 107 HOH HOH . J 5 HOH B 34 1134 109 HOH HOH . J 5 HOH B 35 1135 116 HOH HOH . J 5 HOH B 36 1136 117 HOH HOH . J 5 HOH B 37 1137 119 HOH HOH . J 5 HOH B 38 1138 120 HOH HOH . J 5 HOH B 39 1139 126 HOH HOH . J 5 HOH B 40 1140 128 HOH HOH . J 5 HOH B 41 1141 130 HOH HOH . J 5 HOH B 42 1142 131 HOH HOH . J 5 HOH B 43 1143 132 HOH HOH . J 5 HOH B 44 1144 133 HOH HOH . J 5 HOH B 45 1145 134 HOH HOH . J 5 HOH B 46 1146 138 HOH HOH . J 5 HOH B 47 1147 140 HOH HOH . J 5 HOH B 48 1148 141 HOH HOH . J 5 HOH B 49 1149 143 HOH HOH . J 5 HOH B 50 1150 145 HOH HOH . J 5 HOH B 51 1151 154 HOH HOH . J 5 HOH B 52 1152 155 HOH HOH . J 5 HOH B 53 1153 156 HOH HOH . J 5 HOH B 54 1154 158 HOH HOH . J 5 HOH B 55 1155 159 HOH HOH . J 5 HOH B 56 1156 160 HOH HOH . J 5 HOH B 57 1157 163 HOH HOH . J 5 HOH B 58 1158 164 HOH HOH . J 5 HOH B 59 1159 167 HOH HOH . J 5 HOH B 60 1160 168 HOH HOH . J 5 HOH B 61 1161 170 HOH HOH . J 5 HOH B 62 1162 171 HOH HOH . J 5 HOH B 63 1163 172 HOH HOH . J 5 HOH B 64 1164 175 HOH HOH . J 5 HOH B 65 1165 176 HOH HOH . J 5 HOH B 66 1166 177 HOH HOH . J 5 HOH B 67 1167 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 -4.841 7.833 63.017 1 76.41 ? C1 NAG 1000 A 1 HETATM 2 C C2 NAG . . . C 2 -5.803 6.88 63.731 1 79.68 ? C2 NAG 1000 A 1 HETATM 3 C C3 NAG . . . C 2 -7.187 6.87 63.077 1 85.44 ? C3 NAG 1000 A 1 HETATM 4 C C4 NAG . . . C 2 -7.701 8.297 62.901 1 85.65 ? C4 NAG 1000 A 1 HETATM 5 C C5 NAG . . . C 2 -6.698 9.074 62.053 1 84.09 ? C5 NAG 1000 A 1 HETATM 6 C C6 NAG . . . C 2 -7.111 10.502 61.761 1 84.81 ? C6 NAG 1000 A 1 HETATM 7 C C7 NAG . . . C 2 -4.563 5.018 64.777 1 74.9 ? C7 NAG 1000 A 1 HETATM 8 C C8 NAG . . . C 2 -3.99 3.65 64.564 1 74.56 ? C8 NAG 1000 A 1 HETATM 9 N N2 NAG . . . C 2 -5.225 5.545 63.732 1 76.6 ? N2 NAG 1000 A 1 HETATM 10 O O3 NAG . . . C 2 -8.103 6.1 63.851 1 87.92 ? O3 NAG 1000 A 1 HETATM 11 O O4 NAG . . . C 2 -9.003 8.307 62.321 1 86.35 ? O4 NAG 1000 A 1 HETATM 12 O O5 NAG . . . C 2 -5.432 9.115 62.741 1 80.98 ? O5 NAG 1000 A 1 HETATM 13 O O6 NAG . . . C 2 -6.581 10.98 60.527 1 83.57 ? O6 NAG 1000 A 1 HETATM 14 O O7 NAG . . . C 2 -4.444 5.612 65.846 1 73.76 ? O7 NAG 1000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #