data_4GJT
#
_model_server_result.job_id            AHcUiQiyXPA_jIgbWb8HuQ 
_model_server_result.datetime_utc      '2025-03-05 18:14:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gjt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    4GJT 
#
_exptl.entry_id    4GJT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4GJT 
_cell.length_a            82.35 
_cell.length_b            171.778 
_cell.length_c            117.44 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F 1 1,2 
C,G 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 143 A CYS 287 1_555 A SG CYS 156 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf2 A SG CYS 237 A CYS 381 1_555 A SG CYS 350 A CYS 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 242 A CYS 386 1_555 A SG CYS 250 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 426 A CYS 570 1_555 A SG CYS 435 A CYS 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 22 B CYS 21 1_555 B SG CYS 97 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 272 A ASN 416 1_555 D C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4GJT 
_atom_sites.fract_transf_matrix[1][1]    0.012143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008515 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAG A 1 801 801 NAG NAG . 
E 4 HOH A 1 901 2 HOH HOH . 
E 4 HOH A 2 902 3 HOH HOH . 
E 4 HOH A 3 903 4 HOH HOH . 
E 4 HOH A 4 904 5 HOH HOH . 
E 4 HOH A 5 905 6 HOH HOH . 
E 4 HOH A 6 906 7 HOH HOH . 
E 4 HOH A 7 907 8 HOH HOH . 
E 4 HOH A 8 908 10 HOH HOH . 
E 4 HOH A 9 909 11 HOH HOH . 
E 4 HOH A 10 910 14 HOH HOH . 
E 4 HOH A 11 911 15 HOH HOH . 
E 4 HOH A 12 912 16 HOH HOH . 
E 4 HOH A 13 913 17 HOH HOH . 
E 4 HOH A 14 914 19 HOH HOH . 
E 4 HOH A 15 915 20 HOH HOH . 
E 4 HOH A 16 916 22 HOH HOH . 
E 4 HOH A 17 917 23 HOH HOH . 
E 4 HOH A 18 918 25 HOH HOH . 
E 4 HOH A 19 919 26 HOH HOH . 
E 4 HOH A 20 920 27 HOH HOH . 
E 4 HOH A 21 921 28 HOH HOH . 
E 4 HOH A 22 922 29 HOH HOH . 
E 4 HOH A 23 923 31 HOH HOH . 
E 4 HOH A 24 924 32 HOH HOH . 
E 4 HOH A 25 925 34 HOH HOH . 
E 4 HOH A 26 926 35 HOH HOH . 
E 4 HOH A 27 927 36 HOH HOH . 
E 4 HOH A 28 928 37 HOH HOH . 
E 4 HOH A 29 929 38 HOH HOH . 
E 4 HOH A 30 930 39 HOH HOH . 
E 4 HOH A 31 931 40 HOH HOH . 
E 4 HOH A 32 932 41 HOH HOH . 
E 4 HOH A 33 933 42 HOH HOH . 
E 4 HOH A 34 934 43 HOH HOH . 
E 4 HOH A 35 935 44 HOH HOH . 
E 4 HOH A 36 936 45 HOH HOH . 
E 4 HOH A 37 937 47 HOH HOH . 
E 4 HOH A 38 938 48 HOH HOH . 
E 4 HOH A 39 939 49 HOH HOH . 
E 4 HOH A 40 940 50 HOH HOH . 
E 4 HOH A 41 941 51 HOH HOH . 
E 4 HOH A 42 942 52 HOH HOH . 
E 4 HOH A 43 943 53 HOH HOH . 
E 4 HOH A 44 944 54 HOH HOH . 
E 4 HOH A 45 945 55 HOH HOH . 
E 4 HOH A 46 946 56 HOH HOH . 
E 4 HOH A 47 947 58 HOH HOH . 
E 4 HOH A 48 948 59 HOH HOH . 
E 4 HOH A 49 949 60 HOH HOH . 
E 4 HOH A 50 950 62 HOH HOH . 
E 4 HOH A 51 951 63 HOH HOH . 
E 4 HOH A 52 952 64 HOH HOH . 
E 4 HOH A 53 953 67 HOH HOH . 
E 4 HOH A 54 954 68 HOH HOH . 
E 4 HOH A 55 955 69 HOH HOH . 
E 4 HOH A 56 956 70 HOH HOH . 
E 4 HOH A 57 957 71 HOH HOH . 
E 4 HOH A 58 958 72 HOH HOH . 
E 4 HOH A 59 959 73 HOH HOH . 
E 4 HOH A 60 960 74 HOH HOH . 
E 4 HOH A 61 961 75 HOH HOH . 
E 4 HOH A 62 962 76 HOH HOH . 
E 4 HOH A 63 963 78 HOH HOH . 
F 4 HOH B 1 201 33 HOH HOH . 
F 4 HOH B 2 202 46 HOH HOH . 
F 4 HOH B 3 203 57 HOH HOH . 
F 4 HOH B 4 204 61 HOH HOH . 
F 4 HOH B 5 205 65 HOH HOH . 
F 4 HOH B 6 206 79 HOH HOH . 
G 4 HOH C 1 201 1 HOH HOH . 
G 4 HOH C 2 202 9 HOH HOH . 
G 4 HOH C 3 203 12 HOH HOH . 
G 4 HOH C 4 204 13 HOH HOH . 
G 4 HOH C 5 205 18 HOH HOH . 
G 4 HOH C 6 206 21 HOH HOH . 
G 4 HOH C 7 207 24 HOH HOH . 
G 4 HOH C 8 208 30 HOH HOH . 
G 4 HOH C 9 209 66 HOH HOH . 
G 4 HOH C 10 210 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 6.69 -22.255 8.74 1 105.38 ? C1 NAG 801 A 1 
HETATM 2 C C2 NAG . . . D 3 7.848 -21.365 8.304 1 111.42 ? C2 NAG 801 A 1 
HETATM 3 C C3 NAG . . . D 3 8.715 -20.973 9.494 1 113.61 ? C3 NAG 801 A 1 
HETATM 4 C C4 NAG . . . D 3 7.859 -20.478 10.654 1 108.04 ? C4 NAG 801 A 1 
HETATM 5 C C5 NAG . . . D 3 6.702 -21.431 10.925 1 102.1 ? C5 NAG 801 A 1 
HETATM 6 C C6 NAG . . . D 3 5.8 -20.896 12.031 1 96.26 ? C6 NAG 801 A 1 
HETATM 7 C C7 NAG . . . D 3 9.628 -21.425 6.655 1 128.03 ? C7 NAG 801 A 1 
HETATM 8 C C8 NAG . . . D 3 10.387 -22.241 5.651 1 130.94 ? C8 NAG 801 A 1 
HETATM 9 N N2 NAG . . . D 3 8.651 -22.049 7.309 1 125.06 ? N2 NAG 801 A 1 
HETATM 10 O O3 NAG . . . D 3 9.615 -19.958 9.107 1 111.78 ? O3 NAG 801 A 1 
HETATM 11 O O4 NAG . . . D 3 8.656 -20.365 11.812 1 114.87 ? O4 NAG 801 A 1 
HETATM 12 O O5 NAG . . . D 3 5.948 -21.602 9.745 1 103.4 ? O5 NAG 801 A 1 
HETATM 13 O O6 NAG . . . D 3 5.77 -19.487 11.971 1 102.34 ? O6 NAG 801 A 1 
HETATM 14 O O7 NAG . . . D 3 9.913 -20.244 6.845 1 120.01 ? O7 NAG 801 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#