data_4GJV # _model_server_result.job_id dKYjRJl375d9-TrcDhuvXA _model_server_result.datetime_utc '2024-10-13 12:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4GJV # _exptl.entry_id 4GJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 599.827 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GJV _cell.length_a 57.58 _cell.length_b 57.58 _cell.length_c 183.76 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.58 57.58 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.58 57.58 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 112 A HIS 112 1_555 B RH 0OD . A 0OD 400 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A NE2 HIS 127 A HIS 127 1_555 E RH1 RH . A RH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'C21 H32 Cl3 N3 O2 Rh S 1' _chem_comp.formula_weight 599.827 _chem_comp.id 0OD _chem_comp.mon_nstd_flag . _chem_comp.name trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[Cp*(Biot-methylene)RhCl(H2O)2]+' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag RH C15 0OD sing 1 n n RH C17 0OD sing 2 n n RH C16 0OD sing 3 n n RH CL1 0OD sing 4 n n C1 N2 0OD sing 5 n n N1 C2 0OD sing 6 n n N1 C1 0OD sing 7 n n N1 H1 0OD sing 8 n n O1 C1 0OD doub 9 n n S1 C5 0OD sing 10 n n C2 C4 0OD sing 11 n n C2 H2 0OD sing 12 n n N2 C4 0OD sing 13 n n N2 H3 0OD sing 14 n n C3 C2 0OD sing 15 n n C3 S1 0OD sing 16 n n C3 H4 0OD sing 17 n n C3 H5 0OD sing 18 n n N3 C10 0OD sing 19 n n N3 C11 0OD sing 20 n n N3 H6 0OD sing 21 n n C4 C5 0OD sing 22 n n C4 H7 0OD sing 23 n n C5 C6 0OD sing 24 n n C5 H8 0OD sing 25 n n C6 C7 0OD sing 26 n n C6 H9 0OD sing 27 n n C6 H10 0OD sing 28 n n C7 C8 0OD sing 29 n n C7 H11 0OD sing 30 n n C7 H12 0OD sing 31 n n C8 C9 0OD sing 32 n n C8 H13 0OD sing 33 n n C8 H14 0OD sing 34 n n C9 C10 0OD sing 35 n n C9 H15 0OD sing 36 n n C9 H16 0OD sing 37 n n C10 O2 0OD doub 38 n n C11 H17 0OD sing 39 n n C11 H18 0OD sing 40 n n C12 C11 0OD sing 41 n n C12 C13 0OD sing 42 n n C12 H19 0OD sing 43 n n C12 H20 0OD sing 44 n n C13 RH 0OD sing 45 n n C13 C17 0OD sing 46 n n C14 C13 0OD doub 47 n n C14 RH 0OD sing 48 n n C14 C15 0OD sing 49 n n C15 C19 0OD sing 50 n n C15 C16 0OD doub 51 n n C16 C20 0OD sing 52 n n C17 C16 0OD sing 53 n n C17 C21 0OD sing 54 n n C18 C14 0OD sing 55 n n C18 H21 0OD sing 56 n n C18 H22 0OD sing 57 n n C18 H23 0OD sing 58 n n C19 H24 0OD sing 59 n n C19 H25 0OD sing 60 n n C19 H26 0OD sing 61 n n C20 H27 0OD sing 62 n n C20 H28 0OD sing 63 n n C20 H29 0OD sing 64 n n C21 H30 0OD sing 65 n n C21 H31 0OD sing 66 n n C21 H32 0OD sing 67 n n RH CL2 0OD sing 68 n n RH CL3 0OD sing 69 n n # _atom_sites.entry_id 4GJV _atom_sites.fract_transf_matrix[1][1] 0.017367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0OD A 1 400 400 0OD 0OD . C 3 CL A 1 401 401 CL CL . D 3 CL A 1 402 402 CL CL . E 4 RH A 1 403 403 RH RH . F 3 CL A 1 404 404 CL CL . G 3 CL A 1 405 405 CL CL . H 5 HOH A 1 501 2 HOH HOH . H 5 HOH A 2 502 3 HOH HOH . H 5 HOH A 3 503 4 HOH HOH . H 5 HOH A 4 504 5 HOH HOH . H 5 HOH A 5 505 6 HOH HOH . H 5 HOH A 6 506 7 HOH HOH . H 5 HOH A 7 507 8 HOH HOH . H 5 HOH A 8 508 9 HOH HOH . H 5 HOH A 9 509 10 HOH HOH . H 5 HOH A 10 510 11 HOH HOH . H 5 HOH A 11 511 12 HOH HOH . H 5 HOH A 12 512 13 HOH HOH . H 5 HOH A 13 513 14 HOH HOH . H 5 HOH A 14 514 15 HOH HOH . H 5 HOH A 15 515 16 HOH HOH . H 5 HOH A 16 516 17 HOH HOH . H 5 HOH A 17 517 18 HOH HOH . H 5 HOH A 18 518 19 HOH HOH . H 5 HOH A 19 519 20 HOH HOH . H 5 HOH A 20 520 21 HOH HOH . H 5 HOH A 21 521 22 HOH HOH . H 5 HOH A 22 522 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 RH RH 0OD . . . B 2 26.084 24.871 -15.547 1 83.66 ? RH 0OD 400 A 1 HETATM 2 C C1 0OD . . . B 2 15.458 29.36 -8.538 1 31.79 ? C1 0OD 400 A 1 HETATM 3 N N1 0OD . . . B 2 16.301 29.566 -7.642 1 28.36 ? N1 0OD 400 A 1 HETATM 4 O O1 0OD . . . B 2 14.255 29.447 -8.278 1 29.45 ? O1 0OD 400 A 1 HETATM 5 S S1 0OD . . . B 2 17.965 26.681 -8.549 1 29.7 ? S1 0OD 400 A 1 HETATM 6 C C2 0OD . . . B 2 17.787 29.367 -8.337 1 29.02 ? C2 0OD 400 A 1 HETATM 7 N N2 0OD . . . B 2 15.888 29.041 -9.796 1 26.1 ? N2 0OD 400 A 1 HETATM 8 O O2 0OD . . . B 2 19.472 25.865 -14.92 1 33.09 ? O2 0OD 400 A 1 HETATM 9 C C3 0OD . . . B 2 18.583 28.136 -7.697 1 21.02 ? C3 0OD 400 A 1 HETATM 10 N N3 0OD . . . B 2 20.765 24.122 -14.159 1 34.31 ? N3 0OD 400 A 1 HETATM 11 C C4 0OD . . . B 2 17.449 29.021 -9.759 1 28.13 ? C4 0OD 400 A 1 HETATM 12 C C5 0OD . . . B 2 17.985 27.676 -10.103 1 22.33 ? C5 0OD 400 A 1 HETATM 13 C C6 0OD . . . B 2 17.161 26.989 -11.199 1 32.7 ? C6 0OD 400 A 1 HETATM 14 C C7 0OD . . . B 2 18.107 26.194 -12.049 1 26.57 ? C7 0OD 400 A 1 HETATM 15 C C8 0OD . . . B 2 17.341 25.336 -13.009 1 31.74 ? C8 0OD 400 A 1 HETATM 16 C C9 0OD . . . B 2 18.295 24.131 -13.53 1 26.76 ? C9 0OD 400 A 1 HETATM 17 C C10 0OD . . . B 2 19.533 24.725 -14.293 1 33.76 ? C10 0OD 400 A 1 HETATM 18 C C11 0OD . . . B 2 21.787 25.081 -14.685 1 39.25 ? C11 0OD 400 A 1 HETATM 19 C C12 0OD . . . B 2 23.156 24.604 -14.309 1 52.45 ? C12 0OD 400 A 1 HETATM 20 C C13 0OD . . . B 2 24.266 25.513 -14.751 1 63.68 ? C13 0OD 400 A 1 HETATM 21 C C14 0OD . . . B 2 24.46 26.066 -16.036 1 62.2 ? C14 0OD 400 A 1 HETATM 22 C C15 0OD . . . B 2 25.623 26.863 -16.022 1 64.32 ? C15 0OD 400 A 1 HETATM 23 C C16 0OD . . . B 2 26.165 26.816 -14.729 1 64.36 ? C16 0OD 400 A 1 HETATM 24 C C17 0OD . . . B 2 25.327 25.986 -13.957 1 65.67 ? C17 0OD 400 A 1 HETATM 25 C C18 0OD . . . B 2 23.584 25.854 -17.24 1 65.53 ? C18 0OD 400 A 1 HETATM 26 C C19 0OD . . . B 2 26.17 27.622 -17.198 1 71.66 ? C19 0OD 400 A 1 HETATM 27 C C20 0OD . . . B 2 27.407 27.517 -14.255 1 62.42 ? C20 0OD 400 A 1 HETATM 28 C C21 0OD . . . B 2 25.525 25.651 -12.508 1 66.99 ? C21 0OD 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #