data_4GK2 # _model_server_result.job_id B7rq4iCseqyFRSCoDdI0mw _model_server_result.datetime_utc '2024-12-01 17:01:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4GK2 # _exptl.entry_id 4GK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(5-hydroxy-2-methylphenyl)-8-(2-methoxyphenyl)-1-methyl-1H-imidazo[2,1-f]purine-2,4(3H,8H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.71 _cell.angle_gamma 90 _cell.entry_id 4GK2 _cell.length_a 52.601 _cell.length_b 38.195 _cell.length_c 75.704 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H19 N5 O4' _chem_comp.formula_weight 417.417 _chem_comp.id L66 _chem_comp.mon_nstd_flag . _chem_comp.name 7-(5-hydroxy-2-methylphenyl)-8-(2-methoxyphenyl)-1-methyl-1H-imidazo[2,1-f]purine-2,4(3H,8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C36 L66 doub 173 n y C35 C34 L66 sing 174 n y C36 C37 L66 sing 175 n y C34 C33 L66 doub 176 n y C37 O38 L66 sing 177 n n C37 C32 L66 doub 178 n y C33 C32 L66 sing 179 n y C39 O38 L66 sing 180 n n C32 N3 L66 sing 181 n n O41 C14 L66 sing 182 n n C14 C15 L66 doub 183 n y C14 C13 L66 sing 184 n y N3 C1 L66 sing 185 n y N3 C5 L66 sing 186 n y C15 C10 L66 sing 187 n y N1 C1 L66 doub 188 n y N1 C2 L66 sing 189 n y C18 N5 L66 sing 190 n n C13 C12 L66 doub 191 n y C1 N2 L66 sing 192 n y C10 C5 L66 sing 193 n n C10 C11 L66 doub 194 n y C5 C4 L66 doub 195 n y C12 C11 L66 sing 196 n y C2 N5 L66 sing 197 n n C2 C3 L66 doub 198 n y C11 C40 L66 sing 199 n n N5 C17 L66 sing 200 n n N2 C4 L66 sing 201 n y N2 C3 L66 sing 202 n y C3 C16 L66 sing 203 n n C17 O2 L66 doub 204 n n C17 N4 L66 sing 205 n n C16 N4 L66 sing 206 n n C16 O3 L66 doub 207 n n N4 H1 L66 sing 208 n n C18 H2 L66 sing 209 n n C18 H3 L66 sing 210 n n C18 H4 L66 sing 211 n n C4 H5 L66 sing 212 n n C40 H6 L66 sing 213 n n C40 H7 L66 sing 214 n n C40 H8 L66 sing 215 n n C12 H9 L66 sing 216 n n C13 H10 L66 sing 217 n n C15 H11 L66 sing 218 n n O41 H12 L66 sing 219 n n C33 H13 L66 sing 220 n n C34 H14 L66 sing 221 n n C35 H15 L66 sing 222 n n C36 H16 L66 sing 223 n n C39 H17 L66 sing 224 n n C39 H18 L66 sing 225 n n C39 H19 L66 sing 226 n n # _atom_sites.entry_id 4GK2 _atom_sites.fract_transf_matrix[1][1] 0.019011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00394 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L66 A 1 1001 1 L66 L66 . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 26 HOH HOH . C 3 HOH A 27 1127 27 HOH HOH . C 3 HOH A 28 1128 28 HOH HOH . C 3 HOH A 29 1129 29 HOH HOH . C 3 HOH A 30 1130 30 HOH HOH . C 3 HOH A 31 1131 31 HOH HOH . C 3 HOH A 32 1132 32 HOH HOH . C 3 HOH A 33 1133 33 HOH HOH . C 3 HOH A 34 1134 34 HOH HOH . C 3 HOH A 35 1135 35 HOH HOH . C 3 HOH A 36 1136 36 HOH HOH . C 3 HOH A 37 1137 37 HOH HOH . C 3 HOH A 38 1138 38 HOH HOH . C 3 HOH A 39 1139 39 HOH HOH . C 3 HOH A 40 1140 40 HOH HOH . C 3 HOH A 41 1141 41 HOH HOH . C 3 HOH A 42 1142 42 HOH HOH . C 3 HOH A 43 1143 43 HOH HOH . C 3 HOH A 44 1144 44 HOH HOH . C 3 HOH A 45 1145 45 HOH HOH . C 3 HOH A 46 1146 46 HOH HOH . C 3 HOH A 47 1147 47 HOH HOH . C 3 HOH A 48 1148 48 HOH HOH . C 3 HOH A 49 1149 49 HOH HOH . C 3 HOH A 50 1150 50 HOH HOH . C 3 HOH A 51 1151 51 HOH HOH . C 3 HOH A 52 1152 52 HOH HOH . C 3 HOH A 53 1153 53 HOH HOH . C 3 HOH A 54 1154 54 HOH HOH . C 3 HOH A 55 1155 55 HOH HOH . C 3 HOH A 56 1156 56 HOH HOH . C 3 HOH A 57 1157 57 HOH HOH . C 3 HOH A 58 1158 58 HOH HOH . C 3 HOH A 59 1159 59 HOH HOH . C 3 HOH A 60 1160 60 HOH HOH . C 3 HOH A 61 1161 61 HOH HOH . C 3 HOH A 62 1162 62 HOH HOH . C 3 HOH A 63 1163 63 HOH HOH . C 3 HOH A 64 1164 64 HOH HOH . C 3 HOH A 65 1165 65 HOH HOH . C 3 HOH A 66 1166 66 HOH HOH . C 3 HOH A 67 1167 67 HOH HOH . C 3 HOH A 68 1168 68 HOH HOH . C 3 HOH A 69 1169 69 HOH HOH . C 3 HOH A 70 1170 70 HOH HOH . C 3 HOH A 71 1171 71 HOH HOH . C 3 HOH A 72 1172 72 HOH HOH . C 3 HOH A 73 1173 73 HOH HOH . C 3 HOH A 74 1174 74 HOH HOH . C 3 HOH A 75 1175 75 HOH HOH . C 3 HOH A 76 1176 76 HOH HOH . C 3 HOH A 77 1177 77 HOH HOH . C 3 HOH A 78 1178 78 HOH HOH . C 3 HOH A 79 1179 79 HOH HOH . C 3 HOH A 80 1180 80 HOH HOH . C 3 HOH A 81 1181 81 HOH HOH . C 3 HOH A 82 1182 82 HOH HOH . C 3 HOH A 83 1183 83 HOH HOH . C 3 HOH A 84 1184 85 HOH HOH . C 3 HOH A 85 1185 86 HOH HOH . C 3 HOH A 86 1186 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 L66 . . . B 2 -0.095 -17.184 -12.576 1 28.52 ? O2 L66 1001 A 1 HETATM 2 C C17 L66 . . . B 2 0.193 -15.856 -12.676 1 28.53 ? C17 L66 1001 A 1 HETATM 3 N N4 L66 . . . B 2 0.304 -15.081 -11.565 1 29.68 ? N4 L66 1001 A 1 HETATM 4 C C16 L66 . . . B 2 0.583 -13.758 -11.644 1 22.14 ? C16 L66 1001 A 1 HETATM 5 O O3 L66 . . . B 2 0.691 -12.994 -10.524 1 28.49 ? O3 L66 1001 A 1 HETATM 6 N N5 L66 . . . B 2 0.362 -15.352 -13.907 1 29.32 ? N5 L66 1001 A 1 HETATM 7 C C18 L66 . . . B 2 0.236 -16.189 -15.107 1 32.05 ? C18 L66 1001 A 1 HETATM 8 C C2 L66 . . . B 2 0.639 -14.059 -14.028 1 29.9 ? C2 L66 1001 A 1 HETATM 9 C C3 L66 . . . B 2 0.764 -13.223 -12.916 1 28.22 ? C3 L66 1001 A 1 HETATM 10 N N1 L66 . . . B 2 0.842 -13.374 -15.197 1 25.36 ? N1 L66 1001 A 1 HETATM 11 C C1 L66 . . . B 2 1.074 -12.086 -14.728 1 31.16 ? C1 L66 1001 A 1 HETATM 12 N N2 L66 . . . B 2 1.063 -11.959 -13.381 1 25.88 ? N2 L66 1001 A 1 HETATM 13 C C4 L66 . . . B 2 1.313 -10.594 -12.925 1 22.99 ? C4 L66 1001 A 1 HETATM 14 N N3 L66 . . . B 2 1.397 -10.895 -15.33 1 30.81 ? N3 L66 1001 A 1 HETATM 15 C C5 L66 . . . B 2 1.499 -10.018 -14.336 1 27.15 ? C5 L66 1001 A 1 HETATM 16 C C10 L66 . . . B 2 1.832 -8.574 -14.485 1 34.48 ? C10 L66 1001 A 1 HETATM 17 C C11 L66 . . . B 2 3.012 -8.028 -13.956 1 30.07 ? C11 L66 1001 A 1 HETATM 18 C C40 L66 . . . B 2 4.003 -8.855 -13.164 1 22.05 ? C40 L66 1001 A 1 HETATM 19 C C12 L66 . . . B 2 3.287 -6.679 -14.16 1 25.93 ? C12 L66 1001 A 1 HETATM 20 C C13 L66 . . . B 2 2.393 -5.892 -14.881 1 28.09 ? C13 L66 1001 A 1 HETATM 21 C C15 L66 . . . B 2 0.951 -7.781 -15.221 1 32.74 ? C15 L66 1001 A 1 HETATM 22 C C14 L66 . . . B 2 1.237 -6.436 -15.418 1 28.65 ? C14 L66 1001 A 1 HETATM 23 O O41 L66 . . . B 2 0.377 -5.647 -16.118 1 33.33 ? O41 L66 1001 A 1 HETATM 24 C C32 L66 . . . B 2 1.444 -10.686 -16.645 1 32.72 ? C32 L66 1001 A 1 HETATM 25 C C33 L66 . . . B 2 2.598 -10.482 -17.396 1 36.05 ? C33 L66 1001 A 1 HETATM 26 C C34 L66 . . . B 2 2.557 -10.283 -18.775 1 37.4 ? C34 L66 1001 A 1 HETATM 27 C C35 L66 . . . B 2 1.357 -10.266 -19.48 1 37.38 ? C35 L66 1001 A 1 HETATM 28 C C36 L66 . . . B 2 0.165 -10.461 -18.806 1 37.56 ? C36 L66 1001 A 1 HETATM 29 C C37 L66 . . . B 2 0.177 -10.66 -17.43 1 35.82 ? C37 L66 1001 A 1 HETATM 30 O O38 L66 . . . B 2 -1.012 -10.864 -16.771 1 38.42 ? O38 L66 1001 A 1 HETATM 31 C C39 L66 . . . B 2 -2.187 -10.136 -17.126 1 35.69 ? C39 L66 1001 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #