data_4GK3 # _model_server_result.job_id o2oa0iPC8m6op6lfCW9mZA _model_server_result.datetime_utc '2024-11-26 10:04:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4GK3 # _exptl.entry_id 4GK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-butyl-1-methyl-7-(2-methylphenyl)-1H-imidazo[2,1-f]purine-2,4(3H,8H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.72 _cell.angle_gamma 90 _cell.entry_id 4GK3 _cell.length_a 53.297 _cell.length_b 38.25 _cell.length_c 76.05 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 N5 O2' _chem_comp.formula_weight 351.402 _chem_comp.id L87 _chem_comp.mon_nstd_flag . _chem_comp.name 8-butyl-1-methyl-7-(2-methylphenyl)-1H-imidazo[2,1-f]purine-2,4(3H,8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 L87 sing 173 n n C7 C6 L87 sing 174 n n C9 C8 L87 sing 175 n n C6 N3 L87 sing 176 n n C14 C15 L87 doub 177 n y C14 C13 L87 sing 178 n y C18 N5 L87 sing 179 n n N1 C1 L87 doub 180 n y N1 C2 L87 sing 181 n y N3 C1 L87 sing 182 n y N3 C5 L87 sing 183 n y C15 C10 L87 sing 184 n y C13 C12 L87 doub 185 n y C1 N2 L87 sing 186 n y C10 C5 L87 sing 187 n n C10 C11 L87 doub 188 n y C12 C11 L87 sing 189 n y C5 C4 L87 doub 190 n y C2 N5 L87 sing 191 n n C2 C3 L87 doub 192 n y N5 C17 L87 sing 193 n n C11 C26 L87 sing 194 n n N2 C3 L87 sing 195 n y N2 C4 L87 sing 196 n y C3 C16 L87 sing 197 n n C17 O2 L87 doub 198 n n C17 N4 L87 sing 199 n n C16 N4 L87 sing 200 n n C16 O3 L87 doub 201 n n N4 H1 L87 sing 202 n n C18 H2 L87 sing 203 n n C18 H3 L87 sing 204 n n C18 H4 L87 sing 205 n n C6 H5 L87 sing 206 n n C6 H6 L87 sing 207 n n C7 H7 L87 sing 208 n n C7 H8 L87 sing 209 n n C8 H9 L87 sing 210 n n C8 H10 L87 sing 211 n n C9 H11 L87 sing 212 n n C9 H12 L87 sing 213 n n C9 H13 L87 sing 214 n n C4 H14 L87 sing 215 n n C26 H15 L87 sing 216 n n C26 H16 L87 sing 217 n n C26 H17 L87 sing 218 n n C12 H18 L87 sing 219 n n C13 H19 L87 sing 220 n n C14 H20 L87 sing 221 n n C15 H21 L87 sing 222 n n # _atom_sites.entry_id 4GK3 _atom_sites.fract_transf_matrix[1][1] 0.018763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003891 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L87 A 1 1001 1 L87 L87 . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 26 HOH HOH . C 3 HOH A 27 1127 27 HOH HOH . C 3 HOH A 28 1128 28 HOH HOH . C 3 HOH A 29 1129 29 HOH HOH . C 3 HOH A 30 1130 30 HOH HOH . C 3 HOH A 31 1131 31 HOH HOH . C 3 HOH A 32 1132 32 HOH HOH . C 3 HOH A 33 1133 33 HOH HOH . C 3 HOH A 34 1134 34 HOH HOH . C 3 HOH A 35 1135 35 HOH HOH . C 3 HOH A 36 1136 36 HOH HOH . C 3 HOH A 37 1137 37 HOH HOH . C 3 HOH A 38 1138 38 HOH HOH . C 3 HOH A 39 1139 39 HOH HOH . C 3 HOH A 40 1140 40 HOH HOH . C 3 HOH A 41 1141 41 HOH HOH . C 3 HOH A 42 1142 42 HOH HOH . C 3 HOH A 43 1143 43 HOH HOH . C 3 HOH A 44 1144 44 HOH HOH . C 3 HOH A 45 1145 45 HOH HOH . C 3 HOH A 46 1146 46 HOH HOH . C 3 HOH A 47 1147 47 HOH HOH . C 3 HOH A 48 1148 48 HOH HOH . C 3 HOH A 49 1149 49 HOH HOH . C 3 HOH A 50 1150 50 HOH HOH . C 3 HOH A 51 1151 51 HOH HOH . C 3 HOH A 52 1152 52 HOH HOH . C 3 HOH A 53 1153 53 HOH HOH . C 3 HOH A 54 1154 54 HOH HOH . C 3 HOH A 55 1155 55 HOH HOH . C 3 HOH A 56 1156 56 HOH HOH . C 3 HOH A 57 1157 57 HOH HOH . C 3 HOH A 58 1158 58 HOH HOH . C 3 HOH A 59 1159 59 HOH HOH . C 3 HOH A 60 1160 60 HOH HOH . C 3 HOH A 61 1161 61 HOH HOH . C 3 HOH A 62 1162 62 HOH HOH . C 3 HOH A 63 1163 63 HOH HOH . C 3 HOH A 64 1164 64 HOH HOH . C 3 HOH A 65 1165 65 HOH HOH . C 3 HOH A 66 1166 66 HOH HOH . C 3 HOH A 67 1167 67 HOH HOH . C 3 HOH A 68 1168 68 HOH HOH . C 3 HOH A 69 1169 69 HOH HOH . C 3 HOH A 70 1170 70 HOH HOH . C 3 HOH A 71 1171 71 HOH HOH . C 3 HOH A 72 1172 72 HOH HOH . C 3 HOH A 73 1173 73 HOH HOH . C 3 HOH A 74 1174 74 HOH HOH . C 3 HOH A 75 1175 75 HOH HOH . C 3 HOH A 76 1176 76 HOH HOH . C 3 HOH A 77 1177 77 HOH HOH . C 3 HOH A 78 1178 78 HOH HOH . C 3 HOH A 79 1179 79 HOH HOH . C 3 HOH A 80 1180 80 HOH HOH . C 3 HOH A 81 1181 81 HOH HOH . C 3 HOH A 82 1182 82 HOH HOH . C 3 HOH A 83 1183 83 HOH HOH . C 3 HOH A 84 1184 84 HOH HOH . C 3 HOH A 85 1185 85 HOH HOH . C 3 HOH A 86 1186 86 HOH HOH . C 3 HOH A 87 1187 87 HOH HOH . C 3 HOH A 88 1188 88 HOH HOH . C 3 HOH A 89 1189 89 HOH HOH . C 3 HOH A 90 1190 90 HOH HOH . C 3 HOH A 91 1191 91 HOH HOH . C 3 HOH A 92 1192 92 HOH HOH . C 3 HOH A 93 1193 93 HOH HOH . C 3 HOH A 94 1194 94 HOH HOH . C 3 HOH A 95 1195 95 HOH HOH . C 3 HOH A 96 1196 96 HOH HOH . C 3 HOH A 97 1197 97 HOH HOH . C 3 HOH A 98 1198 98 HOH HOH . C 3 HOH A 99 1199 99 HOH HOH . C 3 HOH A 100 1200 100 HOH HOH . C 3 HOH A 101 1201 101 HOH HOH . C 3 HOH A 102 1202 102 HOH HOH . C 3 HOH A 103 1203 103 HOH HOH . C 3 HOH A 104 1204 104 HOH HOH . C 3 HOH A 105 1205 105 HOH HOH . C 3 HOH A 106 1206 106 HOH HOH . C 3 HOH A 107 1207 107 HOH HOH . C 3 HOH A 108 1208 108 HOH HOH . C 3 HOH A 109 1209 109 HOH HOH . C 3 HOH A 110 1210 110 HOH HOH . C 3 HOH A 111 1211 111 HOH HOH . C 3 HOH A 112 1212 112 HOH HOH . C 3 HOH A 113 1213 113 HOH HOH . C 3 HOH A 114 1214 114 HOH HOH . C 3 HOH A 115 1215 115 HOH HOH . C 3 HOH A 116 1216 116 HOH HOH . C 3 HOH A 117 1217 117 HOH HOH . C 3 HOH A 118 1218 118 HOH HOH . C 3 HOH A 119 1219 119 HOH HOH . C 3 HOH A 120 1220 120 HOH HOH . C 3 HOH A 121 1221 121 HOH HOH . C 3 HOH A 122 1222 122 HOH HOH . C 3 HOH A 123 1223 123 HOH HOH . C 3 HOH A 124 1224 124 HOH HOH . C 3 HOH A 125 1225 125 HOH HOH . C 3 HOH A 126 1226 126 HOH HOH . C 3 HOH A 127 1227 127 HOH HOH . C 3 HOH A 128 1228 128 HOH HOH . C 3 HOH A 129 1229 129 HOH HOH . C 3 HOH A 130 1230 130 HOH HOH . C 3 HOH A 131 1231 131 HOH HOH . C 3 HOH A 132 1232 132 HOH HOH . C 3 HOH A 133 1233 133 HOH HOH . C 3 HOH A 134 1234 134 HOH HOH . C 3 HOH A 135 1235 135 HOH HOH . C 3 HOH A 136 1236 136 HOH HOH . C 3 HOH A 137 1237 137 HOH HOH . C 3 HOH A 138 1238 138 HOH HOH . C 3 HOH A 139 1239 139 HOH HOH . C 3 HOH A 140 1240 140 HOH HOH . C 3 HOH A 141 1241 141 HOH HOH . C 3 HOH A 142 1242 142 HOH HOH . C 3 HOH A 143 1243 143 HOH HOH . C 3 HOH A 144 1244 144 HOH HOH . C 3 HOH A 145 1245 145 HOH HOH . C 3 HOH A 146 1246 146 HOH HOH . C 3 HOH A 147 1247 147 HOH HOH . C 3 HOH A 148 1248 148 HOH HOH . C 3 HOH A 149 1249 149 HOH HOH . C 3 HOH A 150 1250 150 HOH HOH . C 3 HOH A 151 1251 151 HOH HOH . C 3 HOH A 152 1252 152 HOH HOH . C 3 HOH A 153 1253 153 HOH HOH . C 3 HOH A 154 1254 154 HOH HOH . C 3 HOH A 155 1255 155 HOH HOH . C 3 HOH A 156 1256 156 HOH HOH . C 3 HOH A 157 1257 157 HOH HOH . C 3 HOH A 158 1258 158 HOH HOH . C 3 HOH A 159 1259 159 HOH HOH . C 3 HOH A 160 1260 160 HOH HOH . C 3 HOH A 161 1261 161 HOH HOH . C 3 HOH A 162 1262 162 HOH HOH . C 3 HOH A 163 1263 163 HOH HOH . C 3 HOH A 164 1264 164 HOH HOH . C 3 HOH A 165 1265 165 HOH HOH . C 3 HOH A 166 1266 166 HOH HOH . C 3 HOH A 167 1267 167 HOH HOH . C 3 HOH A 168 1268 168 HOH HOH . C 3 HOH A 169 1269 169 HOH HOH . C 3 HOH A 170 1270 170 HOH HOH . C 3 HOH A 171 1271 171 HOH HOH . C 3 HOH A 172 1272 172 HOH HOH . C 3 HOH A 173 1273 173 HOH HOH . C 3 HOH A 174 1274 175 HOH HOH . C 3 HOH A 175 1275 176 HOH HOH . C 3 HOH A 176 1276 177 HOH HOH . C 3 HOH A 177 1277 178 HOH HOH . C 3 HOH A 178 1278 179 HOH HOH . C 3 HOH A 179 1279 180 HOH HOH . C 3 HOH A 180 1280 181 HOH HOH . C 3 HOH A 181 1281 182 HOH HOH . C 3 HOH A 182 1282 183 HOH HOH . C 3 HOH A 183 1283 184 HOH HOH . C 3 HOH A 184 1284 185 HOH HOH . C 3 HOH A 185 1285 186 HOH HOH . C 3 HOH A 186 1286 187 HOH HOH . C 3 HOH A 187 1287 188 HOH HOH . C 3 HOH A 188 1288 189 HOH HOH . C 3 HOH A 189 1289 190 HOH HOH . C 3 HOH A 190 1290 191 HOH HOH . C 3 HOH A 191 1291 192 HOH HOH . C 3 HOH A 192 1292 193 HOH HOH . C 3 HOH A 193 1293 194 HOH HOH . C 3 HOH A 194 1294 195 HOH HOH . C 3 HOH A 195 1295 196 HOH HOH . C 3 HOH A 196 1296 197 HOH HOH . C 3 HOH A 197 1297 198 HOH HOH . C 3 HOH A 198 1298 199 HOH HOH . C 3 HOH A 199 1299 200 HOH HOH . C 3 HOH A 200 1300 201 HOH HOH . C 3 HOH A 201 1301 202 HOH HOH . C 3 HOH A 202 1302 203 HOH HOH . C 3 HOH A 203 1303 204 HOH HOH . C 3 HOH A 204 1304 205 HOH HOH . C 3 HOH A 205 1305 206 HOH HOH . C 3 HOH A 206 1306 207 HOH HOH . C 3 HOH A 207 1307 208 HOH HOH . C 3 HOH A 208 1308 209 HOH HOH . C 3 HOH A 209 1309 210 HOH HOH . C 3 HOH A 210 1310 212 HOH HOH . C 3 HOH A 211 1311 213 HOH HOH . C 3 HOH A 212 1312 214 HOH HOH . C 3 HOH A 213 1313 215 HOH HOH . C 3 HOH A 214 1314 217 HOH HOH . C 3 HOH A 215 1315 218 HOH HOH . C 3 HOH A 216 1316 219 HOH HOH . C 3 HOH A 217 1317 220 HOH HOH . C 3 HOH A 218 1318 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 L87 . . . B 2 18.742 -16.527 24.508 1 35.15 ? O2 L87 1001 A 1 HETATM 2 C C17 L87 . . . B 2 19.074 -15.315 24.45 1 29.67 ? C17 L87 1001 A 1 HETATM 3 N N4 L87 . . . B 2 19.254 -14.603 25.6 1 32.34 ? N4 L87 1001 A 1 HETATM 4 N N5 L87 . . . B 2 19.249 -14.743 23.249 1 31.98 ? N5 L87 1001 A 1 HETATM 5 C C18 L87 . . . B 2 19.058 -15.504 22.005 1 31.31 ? C18 L87 1001 A 1 HETATM 6 C C2 L87 . . . B 2 19.603 -13.458 23.188 1 33.5 ? C2 L87 1001 A 1 HETATM 7 C C3 L87 . . . B 2 19.796 -12.689 24.339 1 26.55 ? C3 L87 1001 A 1 HETATM 8 C C16 L87 . . . B 2 19.611 -13.291 25.586 1 28.57 ? C16 L87 1001 A 1 HETATM 9 O O3 L87 . . . B 2 19.755 -12.689 26.663 1 27.77 ? O3 L87 1001 A 1 HETATM 10 N N1 L87 . . . B 2 19.827 -12.715 22.043 1 27.64 ? N1 L87 1001 A 1 HETATM 11 C C1 L87 . . . B 2 20.166 -11.475 22.591 1 35.36 ? C1 L87 1001 A 1 HETATM 12 N N2 L87 . . . B 2 20.163 -11.426 23.925 1 23.2 ? N2 L87 1001 A 1 HETATM 13 N N3 L87 . . . B 2 20.489 -10.236 22.096 1 30.84 ? N3 L87 1001 A 1 HETATM 14 C C6 L87 . . . B 2 20.573 -10.079 20.641 1 32.79 ? C6 L87 1001 A 1 HETATM 15 C C7 L87 . . . B 2 19.19 -10.226 20.004 1 35.24 ? C7 L87 1001 A 1 HETATM 16 C C8 L87 . . . B 2 18.161 -9.271 20.606 1 29.15 ? C8 L87 1001 A 1 HETATM 17 C C9 L87 . . . B 2 16.792 -9.526 20.009 1 23.19 ? C9 L87 1001 A 1 HETATM 18 C C5 L87 . . . B 2 20.713 -9.43 23.173 1 31.41 ? C5 L87 1001 A 1 HETATM 19 C C4 L87 . . . B 2 20.488 -10.151 24.391 1 27.93 ? C4 L87 1001 A 1 HETATM 20 C C10 L87 . . . B 2 21.118 -8.007 22.946 1 30.82 ? C10 L87 1001 A 1 HETATM 21 C C11 L87 . . . B 2 22.361 -7.532 23.367 1 26.65 ? C11 L87 1001 A 1 HETATM 22 C C26 L87 . . . B 2 23.328 -8.415 24.124 1 23.5 ? C26 L87 1001 A 1 HETATM 23 C C12 L87 . . . B 2 22.728 -6.211 23.108 1 23.95 ? C12 L87 1001 A 1 HETATM 24 C C13 L87 . . . B 2 21.857 -5.369 22.421 1 37.93 ? C13 L87 1001 A 1 HETATM 25 C C14 L87 . . . B 2 20.623 -5.851 21.986 1 35.71 ? C14 L87 1001 A 1 HETATM 26 C C15 L87 . . . B 2 20.256 -7.167 22.245 1 27.45 ? C15 L87 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #