data_4GK4 # _model_server_result.job_id VRsasclE8iXLPszfwdjB1A _model_server_result.datetime_utc '2024-11-29 11:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4GK4 # _exptl.entry_id 4GK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.426 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-butyl-1-methyl-7-(5-methyl-1H-indazol-4-yl)-1H-imidazo[2,1-f]purine-2,4(3H,8H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.49 _cell.angle_gamma 90 _cell.entry_id 4GK4 _cell.length_a 53.067 _cell.length_b 38.182 _cell.length_c 75.841 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 N7 O2' _chem_comp.formula_weight 391.426 _chem_comp.id L90 _chem_comp.mon_nstd_flag . _chem_comp.name 8-butyl-1-methyl-7-(5-methyl-1H-indazol-4-yl)-1H-imidazo[2,1-f]purine-2,4(3H,8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C16 L90 doub 173 n n N4 C16 L90 sing 174 n n N4 C17 L90 sing 175 n n C16 C3 L90 sing 176 n n O2 C17 L90 doub 177 n n C17 N5 L90 sing 178 n n C3 N2 L90 sing 179 n y C3 C2 L90 doub 180 n y C4 N2 L90 sing 181 n y C4 C5 L90 doub 182 n y C26 C11 L90 sing 183 n n N2 C1 L90 sing 184 n y N5 C2 L90 sing 185 n n N5 C18 L90 sing 186 n n C2 N1 L90 sing 187 n y C11 C12 L90 doub 188 n y C11 C10 L90 sing 189 n y C5 C10 L90 sing 190 n n C5 N3 L90 sing 191 n y C12 C13 L90 sing 192 n y C10 C15 L90 doub 193 n y C1 N1 L90 doub 194 n y C1 N3 L90 sing 195 n y C13 C14 L90 doub 196 n y C15 C14 L90 sing 197 n y C15 C29 L90 sing 198 n y N3 C6 L90 sing 199 n n C14 N27 L90 sing 200 n y C29 N28 L90 doub 201 n y N27 N28 L90 sing 202 n y C6 C7 L90 sing 203 n n C8 C9 L90 sing 204 n n C8 C7 L90 sing 205 n n N4 H1 L90 sing 206 n n C4 H2 L90 sing 207 n n C6 H3 L90 sing 208 n n C6 H4 L90 sing 209 n n C7 H5 L90 sing 210 n n C7 H6 L90 sing 211 n n C8 H7 L90 sing 212 n n C8 H8 L90 sing 213 n n C9 H9 L90 sing 214 n n C9 H10 L90 sing 215 n n C9 H11 L90 sing 216 n n C18 H12 L90 sing 217 n n C18 H13 L90 sing 218 n n C18 H14 L90 sing 219 n n C29 H15 L90 sing 220 n n C13 H17 L90 sing 221 n n C12 H18 L90 sing 222 n n C26 H19 L90 sing 223 n n C26 H20 L90 sing 224 n n C26 H21 L90 sing 225 n n N27 H16 L90 sing 226 n n # _atom_sites.entry_id 4GK4 _atom_sites.fract_transf_matrix[1][1] 0.018844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003829 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L90 A 1 1001 1 L90 L90 . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 26 HOH HOH . C 3 HOH A 27 1127 27 HOH HOH . C 3 HOH A 28 1128 28 HOH HOH . C 3 HOH A 29 1129 29 HOH HOH . C 3 HOH A 30 1130 30 HOH HOH . C 3 HOH A 31 1131 31 HOH HOH . C 3 HOH A 32 1132 32 HOH HOH . C 3 HOH A 33 1133 33 HOH HOH . C 3 HOH A 34 1134 34 HOH HOH . C 3 HOH A 35 1135 35 HOH HOH . C 3 HOH A 36 1136 36 HOH HOH . C 3 HOH A 37 1137 37 HOH HOH . C 3 HOH A 38 1138 38 HOH HOH . C 3 HOH A 39 1139 39 HOH HOH . C 3 HOH A 40 1140 40 HOH HOH . C 3 HOH A 41 1141 41 HOH HOH . C 3 HOH A 42 1142 42 HOH HOH . C 3 HOH A 43 1143 43 HOH HOH . C 3 HOH A 44 1144 44 HOH HOH . C 3 HOH A 45 1145 45 HOH HOH . C 3 HOH A 46 1146 46 HOH HOH . C 3 HOH A 47 1147 47 HOH HOH . C 3 HOH A 48 1148 48 HOH HOH . C 3 HOH A 49 1149 49 HOH HOH . C 3 HOH A 50 1150 50 HOH HOH . C 3 HOH A 51 1151 51 HOH HOH . C 3 HOH A 52 1152 52 HOH HOH . C 3 HOH A 53 1153 53 HOH HOH . C 3 HOH A 54 1154 54 HOH HOH . C 3 HOH A 55 1155 55 HOH HOH . C 3 HOH A 56 1156 56 HOH HOH . C 3 HOH A 57 1157 57 HOH HOH . C 3 HOH A 58 1158 58 HOH HOH . C 3 HOH A 59 1159 59 HOH HOH . C 3 HOH A 60 1160 60 HOH HOH . C 3 HOH A 61 1161 61 HOH HOH . C 3 HOH A 62 1162 62 HOH HOH . C 3 HOH A 63 1163 63 HOH HOH . C 3 HOH A 64 1164 64 HOH HOH . C 3 HOH A 65 1165 65 HOH HOH . C 3 HOH A 66 1166 66 HOH HOH . C 3 HOH A 67 1167 67 HOH HOH . C 3 HOH A 68 1168 68 HOH HOH . C 3 HOH A 69 1169 69 HOH HOH . C 3 HOH A 70 1170 70 HOH HOH . C 3 HOH A 71 1171 71 HOH HOH . C 3 HOH A 72 1172 72 HOH HOH . C 3 HOH A 73 1173 73 HOH HOH . C 3 HOH A 74 1174 74 HOH HOH . C 3 HOH A 75 1175 75 HOH HOH . C 3 HOH A 76 1176 76 HOH HOH . C 3 HOH A 77 1177 77 HOH HOH . C 3 HOH A 78 1178 78 HOH HOH . C 3 HOH A 79 1179 79 HOH HOH . C 3 HOH A 80 1180 80 HOH HOH . C 3 HOH A 81 1181 81 HOH HOH . C 3 HOH A 82 1182 82 HOH HOH . C 3 HOH A 83 1183 83 HOH HOH . C 3 HOH A 84 1184 84 HOH HOH . C 3 HOH A 85 1185 85 HOH HOH . C 3 HOH A 86 1186 86 HOH HOH . C 3 HOH A 87 1187 87 HOH HOH . C 3 HOH A 88 1188 88 HOH HOH . C 3 HOH A 89 1189 89 HOH HOH . C 3 HOH A 90 1190 90 HOH HOH . C 3 HOH A 91 1191 91 HOH HOH . C 3 HOH A 92 1192 92 HOH HOH . C 3 HOH A 93 1193 93 HOH HOH . C 3 HOH A 94 1194 94 HOH HOH . C 3 HOH A 95 1195 95 HOH HOH . C 3 HOH A 96 1196 96 HOH HOH . C 3 HOH A 97 1197 97 HOH HOH . C 3 HOH A 98 1198 98 HOH HOH . C 3 HOH A 99 1199 99 HOH HOH . C 3 HOH A 100 1200 100 HOH HOH . C 3 HOH A 101 1201 101 HOH HOH . C 3 HOH A 102 1202 102 HOH HOH . C 3 HOH A 103 1203 103 HOH HOH . C 3 HOH A 104 1204 104 HOH HOH . C 3 HOH A 105 1205 105 HOH HOH . C 3 HOH A 106 1206 106 HOH HOH . C 3 HOH A 107 1207 107 HOH HOH . C 3 HOH A 108 1208 108 HOH HOH . C 3 HOH A 109 1209 109 HOH HOH . C 3 HOH A 110 1210 110 HOH HOH . C 3 HOH A 111 1211 111 HOH HOH . C 3 HOH A 112 1212 112 HOH HOH . C 3 HOH A 113 1213 113 HOH HOH . C 3 HOH A 114 1214 114 HOH HOH . C 3 HOH A 115 1215 115 HOH HOH . C 3 HOH A 116 1216 116 HOH HOH . C 3 HOH A 117 1217 117 HOH HOH . C 3 HOH A 118 1218 118 HOH HOH . C 3 HOH A 119 1219 119 HOH HOH . C 3 HOH A 120 1220 120 HOH HOH . C 3 HOH A 121 1221 121 HOH HOH . C 3 HOH A 122 1222 122 HOH HOH . C 3 HOH A 123 1223 123 HOH HOH . C 3 HOH A 124 1224 124 HOH HOH . C 3 HOH A 125 1225 125 HOH HOH . C 3 HOH A 126 1226 126 HOH HOH . C 3 HOH A 127 1227 127 HOH HOH . C 3 HOH A 128 1228 128 HOH HOH . C 3 HOH A 129 1229 129 HOH HOH . C 3 HOH A 130 1230 130 HOH HOH . C 3 HOH A 131 1231 132 HOH HOH . C 3 HOH A 132 1232 133 HOH HOH . C 3 HOH A 133 1233 135 HOH HOH . C 3 HOH A 134 1234 137 HOH HOH . C 3 HOH A 135 1235 138 HOH HOH . C 3 HOH A 136 1236 139 HOH HOH . C 3 HOH A 137 1237 140 HOH HOH . C 3 HOH A 138 1238 141 HOH HOH . C 3 HOH A 139 1239 142 HOH HOH . C 3 HOH A 140 1240 144 HOH HOH . C 3 HOH A 141 1241 145 HOH HOH . C 3 HOH A 142 1242 146 HOH HOH . C 3 HOH A 143 1243 147 HOH HOH . C 3 HOH A 144 1244 148 HOH HOH . C 3 HOH A 145 1245 149 HOH HOH . C 3 HOH A 146 1246 150 HOH HOH . C 3 HOH A 147 1247 151 HOH HOH . C 3 HOH A 148 1248 152 HOH HOH . C 3 HOH A 149 1249 153 HOH HOH . C 3 HOH A 150 1250 154 HOH HOH . C 3 HOH A 151 1251 155 HOH HOH . C 3 HOH A 152 1252 156 HOH HOH . C 3 HOH A 153 1253 157 HOH HOH . C 3 HOH A 154 1254 158 HOH HOH . C 3 HOH A 155 1255 160 HOH HOH . C 3 HOH A 156 1256 161 HOH HOH . C 3 HOH A 157 1257 163 HOH HOH . C 3 HOH A 158 1258 164 HOH HOH . C 3 HOH A 159 1259 165 HOH HOH . C 3 HOH A 160 1260 166 HOH HOH . C 3 HOH A 161 1261 167 HOH HOH . C 3 HOH A 162 1262 168 HOH HOH . C 3 HOH A 163 1263 169 HOH HOH . C 3 HOH A 164 1264 172 HOH HOH . C 3 HOH A 165 1265 173 HOH HOH . C 3 HOH A 166 1266 174 HOH HOH . C 3 HOH A 167 1267 175 HOH HOH . C 3 HOH A 168 1268 176 HOH HOH . C 3 HOH A 169 1269 177 HOH HOH . C 3 HOH A 170 1270 178 HOH HOH . C 3 HOH A 171 1271 179 HOH HOH . C 3 HOH A 172 1272 180 HOH HOH . C 3 HOH A 173 1273 181 HOH HOH . C 3 HOH A 174 1274 183 HOH HOH . C 3 HOH A 175 1275 184 HOH HOH . C 3 HOH A 176 1276 185 HOH HOH . C 3 HOH A 177 1277 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 L90 . . . B 2 -8.598 5.335 47.588 0.33 31.12 ? O3 L90 1001 A 1 HETATM 2 C C16 L90 . . . B 2 -8.423 4.595 48.576 1 29.84 ? C16 L90 1001 A 1 HETATM 3 N N4 L90 . . . B 2 -8.036 3.307 48.424 1 34.37 ? N4 L90 1001 A 1 HETATM 4 C C3 L90 . . . B 2 -8.621 5.046 49.871 0.95 35.21 ? C3 L90 1001 A 1 HETATM 5 N N2 L90 . . . B 2 -9.016 6.26 50.372 0.79 32.35 ? N2 L90 1001 A 1 HETATM 6 C C4 L90 . . . B 2 -9.38 7.539 49.974 0.62 38.13 ? C4 L90 1001 A 1 HETATM 7 C C5 L90 . . . B 2 -9.635 8.187 51.223 0.67 36.47 ? C5 L90 1001 A 1 HETATM 8 N N3 L90 . . . B 2 -9.402 7.317 52.255 0.68 40.31 ? N3 L90 1001 A 1 HETATM 9 C C6 L90 . . . B 2 -9.514 7.346 53.716 1 45.49 ? C6 L90 1001 A 1 HETATM 10 C C7 L90 . . . B 2 -8.314 7.975 54.408 0.76 49.96 ? C7 L90 1001 A 1 HETATM 11 C C8 L90 . . . B 2 -6.977 7.472 53.885 0 43.42 ? C8 L90 1001 A 1 HETATM 12 C C9 L90 . . . B 2 -5.883 8.43 54.308 1 24.04 ? C9 L90 1001 A 1 HETATM 13 C C1 L90 . . . B 2 -9.037 6.117 51.69 0.34 39.74 ? C1 L90 1001 A 1 HETATM 14 N N1 L90 . . . B 2 -8.666 4.843 52.14 0.77 38.7 ? N1 L90 1001 A 1 HETATM 15 C C2 L90 . . . B 2 -8.414 4.189 50.947 0.51 40.01 ? C2 L90 1001 A 1 HETATM 16 N N5 L90 . . . B 2 -8.022 2.926 50.756 0.92 35.11 ? N5 L90 1001 A 1 HETATM 17 C C18 L90 . . . B 2 -7.802 2.032 51.899 1 52.3 ? C18 L90 1001 A 1 HETATM 18 C C17 L90 . . . B 2 -7.831 2.491 49.497 0.57 40.89 ? C17 L90 1001 A 1 HETATM 19 O O2 L90 . . . B 2 -7.464 1.307 49.306 0.93 46.24 ? O2 L90 1001 A 1 HETATM 20 C C10 L90 . . . B 2 -10.086 9.599 51.443 0.17 36.93 ? C10 L90 1001 A 1 HETATM 21 C C15 L90 . . . B 2 -9.239 10.491 52.103 0.84 39.83 ? C15 L90 1001 A 1 HETATM 22 C C29 L90 . . . B 2 -7.916 10.303 52.599 0.87 40.57 ? C29 L90 1001 A 1 HETATM 23 N N28 L90 . . . B 2 -7.577 11.503 53.127 0.76 37.95 ? N28 L90 1001 A 1 HETATM 24 N N27 L90 . . . B 2 -8.643 12.403 52.959 0.85 38.92 ? N27 L90 1001 A 1 HETATM 25 C C14 L90 . . . B 2 -9.66 11.789 52.331 0.54 38.93 ? C14 L90 1001 A 1 HETATM 26 C C13 L90 . . . B 2 -10.917 12.219 51.934 0.61 33.71 ? C13 L90 1001 A 1 HETATM 27 C C12 L90 . . . B 2 -11.764 11.329 51.295 0.72 28.2 ? C12 L90 1001 A 1 HETATM 28 C C11 L90 . . . B 2 -11.356 10.022 51.053 0.39 30.74 ? C11 L90 1001 A 1 HETATM 29 C C26 L90 . . . B 2 -12.321 9.103 50.346 0.88 29.77 ? C26 L90 1001 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #