data_4GKZ
#
_model_server_result.job_id            qd3ZxjQLB_PmDowKCo0VDw 
_model_server_result.datetime_utc      '2025-07-19 14:54:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4GKZ 
#
_exptl.entry_id    4GKZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.33 
_cell.angle_gamma         90 
_cell.entry_id            4GKZ 
_cell.length_a            69.24 
_cell.length_b            49.66 
_cell.length_c            72.61 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GKZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 91 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 138 A CYS 137 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 163 A CYS 162 1_555 B SG CYS 169 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 B SG CYS 22 B CYS 23 1_555 B SG CYS 90 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 B SG CYS 143 B CYS 144 1_555 B SG CYS 208 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4GKZ 
_atom_sites.fract_transf_matrix[1][1]    0.014443 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001094 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020137 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 301 301 EDO EDO . 
D 3 EDO A 1 302 302 EDO EDO . 
E 3 EDO A 1 303 303 EDO EDO . 
F 3 EDO A 1 304 306 EDO EDO . 
G 4 SO4 A 1 305 401 SO4 SO4 . 
H 4 SO4 A 1 306 402 SO4 SO4 . 
I 5 TAM A 1 307 501 TAM TAM . 
J 3 EDO B 1 301 304 EDO EDO . 
K 3 EDO B 1 302 305 EDO EDO . 
L 6 HOH A 1 601 601 HOH HOH . 
L 6 HOH A 2 602 602 HOH HOH . 
L 6 HOH A 3 603 603 HOH HOH . 
L 6 HOH A 4 604 604 HOH HOH . 
L 6 HOH A 5 605 605 HOH HOH . 
L 6 HOH A 6 606 606 HOH HOH . 
L 6 HOH A 7 607 608 HOH HOH . 
L 6 HOH A 8 608 611 HOH HOH . 
L 6 HOH A 9 609 612 HOH HOH . 
L 6 HOH A 10 610 613 HOH HOH . 
L 6 HOH A 11 611 616 HOH HOH . 
L 6 HOH A 12 612 618 HOH HOH . 
L 6 HOH A 13 613 619 HOH HOH . 
L 6 HOH A 14 614 622 HOH HOH . 
L 6 HOH A 15 615 625 HOH HOH . 
L 6 HOH A 16 616 626 HOH HOH . 
L 6 HOH A 17 617 627 HOH HOH . 
L 6 HOH A 18 618 628 HOH HOH . 
L 6 HOH A 19 619 632 HOH HOH . 
L 6 HOH A 20 620 634 HOH HOH . 
L 6 HOH A 21 621 638 HOH HOH . 
L 6 HOH A 22 622 639 HOH HOH . 
L 6 HOH A 23 623 640 HOH HOH . 
L 6 HOH A 24 624 641 HOH HOH . 
L 6 HOH A 25 625 642 HOH HOH . 
L 6 HOH A 26 626 643 HOH HOH . 
L 6 HOH A 27 627 644 HOH HOH . 
L 6 HOH A 28 628 645 HOH HOH . 
L 6 HOH A 29 629 646 HOH HOH . 
L 6 HOH A 30 630 647 HOH HOH . 
L 6 HOH A 31 631 648 HOH HOH . 
L 6 HOH A 32 632 649 HOH HOH . 
M 6 HOH B 1 401 607 HOH HOH . 
M 6 HOH B 2 402 609 HOH HOH . 
M 6 HOH B 3 403 610 HOH HOH . 
M 6 HOH B 4 404 614 HOH HOH . 
M 6 HOH B 5 405 615 HOH HOH . 
M 6 HOH B 6 406 617 HOH HOH . 
M 6 HOH B 7 407 620 HOH HOH . 
M 6 HOH B 8 408 621 HOH HOH . 
M 6 HOH B 9 409 623 HOH HOH . 
M 6 HOH B 10 410 624 HOH HOH . 
M 6 HOH B 11 411 629 HOH HOH . 
M 6 HOH B 12 412 630 HOH HOH . 
M 6 HOH B 13 413 631 HOH HOH . 
M 6 HOH B 14 414 633 HOH HOH . 
M 6 HOH B 15 415 635 HOH HOH . 
M 6 HOH B 16 416 636 HOH HOH . 
M 6 HOH B 17 417 637 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -0.653 -2.478 30.135 1 32.45 ? C1 EDO 301 A 1 
HETATM 2 O O1 EDO . . . C 3 -0.482 -2.476 31.543 1 31.08 ? O1 EDO 301 A 1 
HETATM 3 C C2 EDO . . . C 3 -2.05 -2.982 29.745 1 34.08 ? C2 EDO 301 A 1 
HETATM 4 O O2 EDO . . . C 3 -2.206 -2.856 28.322 1 36.44 ? O2 EDO 301 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           1526 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#