data_4GL0 # _model_server_result.job_id 6VONzpLrfd04Gfa5nSen5Q _model_server_result.datetime_utc '2024-10-28 02:28:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 4GL0 # _exptl.entry_id 4GL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GL0 _cell.length_a 56.33 _cell.length_b 56.33 _cell.length_c 182.493 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 48 A ALA 72 1_555 A N MSE 49 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 49 A MSE 73 1_555 A N MSE 50 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 50 A MSE 74 1_555 A N THR 51 A THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C LYS 72 A LYS 96 1_555 A N MSE 73 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale5 A C MSE 73 A MSE 97 1_555 A N LYS 74 A LYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C PHE 97 A PHE 121 1_555 A N MSE 98 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 A C MSE 98 A MSE 122 1_555 A N ASP 99 A ASP 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C SER 109 A SER 133 1_555 A N MSE 110 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale9 A C MSE 110 A MSE 134 1_555 A N PRO 111 A PRO 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C GLU 124 A GLU 148 1_555 A N MSE 125 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 A C MSE 125 A MSE 149 1_555 A N PHE 126 A PHE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C VAL 155 A VAL 179 1_555 A N MSE 156 A MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale13 A C MSE 156 A MSE 180 1_555 A N GLY 157 A GLY 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale14 A C THR 184 A THR 208 1_555 A N MSE 185 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale15 A C MSE 185 A MSE 209 1_555 A N THR 186 A THR 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C LEU 200 A LEU 224 1_555 A N MSE 201 A MSE 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 A C MSE 201 A MSE 225 1_555 A N ALA 202 A ALA 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale18 A C GLU 218 A GLU 242 1_555 A N MSE 219 A MSE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale19 A C MSE 219 A MSE 243 1_555 A N LEU 220 A LEU 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 A C ASN 241 A ASN 265 1_555 A N MSE 242 A MSE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 A C MSE 242 A MSE 266 1_555 A N VAL 243 A VAL 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale22 A C PHE 260 A PHE 284 1_555 A N MSE 261 A MSE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale23 A C MSE 261 A MSE 285 1_555 A N LEU 262 A LEU 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale24 A C ASP 300 A ASP 324 1_555 A N MSE 301 A MSE 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 A C MSE 301 A MSE 325 1_555 A N ASP 302 A ASP 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale26 A C ARG 316 A ARG 340 1_555 A N MSE 317 A MSE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale27 A C MSE 317 A MSE 341 1_555 A N LEU 318 A LEU 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 A C LYS 329 A LYS 353 1_555 A N MSE 330 A MSE 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 A C MSE 330 A MSE 354 1_555 A N TYR 331 A TYR 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4GL0 _atom_sites.fract_transf_matrix[1][1] 0.017753 _atom_sites.fract_transf_matrix[1][2] 0.010249 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 501 501 PGE PGE . C 3 PG4 A 1 502 502 PG4 PG4 . D 3 PG4 A 1 503 503 PG4 PG4 . E 4 PEG A 1 504 504 PEG PEG . F 5 EDO A 1 505 505 EDO EDO . G 5 EDO A 1 506 506 EDO EDO . H 5 EDO A 1 507 507 EDO EDO . I 5 EDO A 1 508 508 EDO EDO . J 5 EDO A 1 509 509 EDO EDO . K 5 EDO A 1 510 510 EDO EDO . L 6 HOH A 1 601 1 HOH HOH . L 6 HOH A 2 602 2 HOH HOH . L 6 HOH A 3 603 3 HOH HOH . L 6 HOH A 4 604 4 HOH HOH . L 6 HOH A 5 605 5 HOH HOH . L 6 HOH A 6 606 6 HOH HOH . L 6 HOH A 7 607 7 HOH HOH . L 6 HOH A 8 608 8 HOH HOH . L 6 HOH A 9 609 9 HOH HOH . L 6 HOH A 10 610 10 HOH HOH . L 6 HOH A 11 611 11 HOH HOH . L 6 HOH A 12 612 12 HOH HOH . L 6 HOH A 13 613 13 HOH HOH . L 6 HOH A 14 614 14 HOH HOH . L 6 HOH A 15 615 15 HOH HOH . L 6 HOH A 16 616 16 HOH HOH . L 6 HOH A 17 617 17 HOH HOH . L 6 HOH A 18 618 18 HOH HOH . L 6 HOH A 19 619 19 HOH HOH . L 6 HOH A 20 620 20 HOH HOH . L 6 HOH A 21 621 21 HOH HOH . L 6 HOH A 22 622 22 HOH HOH . L 6 HOH A 23 623 23 HOH HOH . L 6 HOH A 24 624 24 HOH HOH . L 6 HOH A 25 625 25 HOH HOH . L 6 HOH A 26 626 26 HOH HOH . L 6 HOH A 27 627 27 HOH HOH . L 6 HOH A 28 628 28 HOH HOH . L 6 HOH A 29 629 29 HOH HOH . L 6 HOH A 30 630 30 HOH HOH . L 6 HOH A 31 631 31 HOH HOH . L 6 HOH A 32 632 32 HOH HOH . L 6 HOH A 33 633 33 HOH HOH . L 6 HOH A 34 634 34 HOH HOH . L 6 HOH A 35 635 35 HOH HOH . L 6 HOH A 36 636 36 HOH HOH . L 6 HOH A 37 637 37 HOH HOH . L 6 HOH A 38 638 38 HOH HOH . L 6 HOH A 39 639 39 HOH HOH . L 6 HOH A 40 640 40 HOH HOH . L 6 HOH A 41 641 41 HOH HOH . L 6 HOH A 42 642 42 HOH HOH . L 6 HOH A 43 643 43 HOH HOH . L 6 HOH A 44 644 44 HOH HOH . L 6 HOH A 45 645 45 HOH HOH . L 6 HOH A 46 646 46 HOH HOH . L 6 HOH A 47 647 47 HOH HOH . L 6 HOH A 48 648 48 HOH HOH . L 6 HOH A 49 649 49 HOH HOH . L 6 HOH A 50 650 50 HOH HOH . L 6 HOH A 51 651 51 HOH HOH . L 6 HOH A 52 652 52 HOH HOH . L 6 HOH A 53 653 53 HOH HOH . L 6 HOH A 54 654 54 HOH HOH . L 6 HOH A 55 655 55 HOH HOH . L 6 HOH A 56 656 56 HOH HOH . L 6 HOH A 57 657 57 HOH HOH . L 6 HOH A 58 658 58 HOH HOH . L 6 HOH A 59 659 59 HOH HOH . L 6 HOH A 60 660 60 HOH HOH . L 6 HOH A 61 661 61 HOH HOH . L 6 HOH A 62 662 62 HOH HOH . L 6 HOH A 63 663 63 HOH HOH . L 6 HOH A 64 664 64 HOH HOH . L 6 HOH A 65 665 65 HOH HOH . L 6 HOH A 66 666 66 HOH HOH . L 6 HOH A 67 667 67 HOH HOH . L 6 HOH A 68 668 68 HOH HOH . L 6 HOH A 69 669 69 HOH HOH . L 6 HOH A 70 670 70 HOH HOH . L 6 HOH A 71 671 71 HOH HOH . L 6 HOH A 72 672 72 HOH HOH . L 6 HOH A 73 673 73 HOH HOH . L 6 HOH A 74 674 74 HOH HOH . L 6 HOH A 75 675 75 HOH HOH . L 6 HOH A 76 676 76 HOH HOH . L 6 HOH A 77 677 77 HOH HOH . L 6 HOH A 78 678 78 HOH HOH . L 6 HOH A 79 679 79 HOH HOH . L 6 HOH A 80 680 80 HOH HOH . L 6 HOH A 81 681 81 HOH HOH . L 6 HOH A 82 682 82 HOH HOH . L 6 HOH A 83 683 83 HOH HOH . L 6 HOH A 84 684 84 HOH HOH . L 6 HOH A 85 685 85 HOH HOH . L 6 HOH A 86 686 86 HOH HOH . L 6 HOH A 87 687 87 HOH HOH . L 6 HOH A 88 688 88 HOH HOH . L 6 HOH A 89 689 89 HOH HOH . L 6 HOH A 90 690 90 HOH HOH . L 6 HOH A 91 691 91 HOH HOH . L 6 HOH A 92 692 92 HOH HOH . L 6 HOH A 93 693 93 HOH HOH . L 6 HOH A 94 694 94 HOH HOH . L 6 HOH A 95 695 95 HOH HOH . L 6 HOH A 96 696 96 HOH HOH . L 6 HOH A 97 697 97 HOH HOH . L 6 HOH A 98 698 98 HOH HOH . L 6 HOH A 99 699 99 HOH HOH . L 6 HOH A 100 700 100 HOH HOH . L 6 HOH A 101 701 101 HOH HOH . L 6 HOH A 102 702 102 HOH HOH . L 6 HOH A 103 703 103 HOH HOH . L 6 HOH A 104 704 104 HOH HOH . L 6 HOH A 105 705 105 HOH HOH . L 6 HOH A 106 706 106 HOH HOH . L 6 HOH A 107 707 107 HOH HOH . L 6 HOH A 108 708 108 HOH HOH . L 6 HOH A 109 709 109 HOH HOH . L 6 HOH A 110 710 110 HOH HOH . L 6 HOH A 111 711 111 HOH HOH . L 6 HOH A 112 712 112 HOH HOH . L 6 HOH A 113 713 113 HOH HOH . L 6 HOH A 114 714 114 HOH HOH . L 6 HOH A 115 715 115 HOH HOH . L 6 HOH A 116 716 116 HOH HOH . L 6 HOH A 117 717 117 HOH HOH . L 6 HOH A 118 718 118 HOH HOH . L 6 HOH A 119 719 119 HOH HOH . L 6 HOH A 120 720 120 HOH HOH . L 6 HOH A 121 721 121 HOH HOH . L 6 HOH A 122 722 122 HOH HOH . L 6 HOH A 123 723 123 HOH HOH . L 6 HOH A 124 724 124 HOH HOH . L 6 HOH A 125 725 125 HOH HOH . L 6 HOH A 126 726 126 HOH HOH . L 6 HOH A 127 727 127 HOH HOH . L 6 HOH A 128 728 128 HOH HOH . L 6 HOH A 129 729 129 HOH HOH . L 6 HOH A 130 730 130 HOH HOH . L 6 HOH A 131 731 131 HOH HOH . L 6 HOH A 132 732 132 HOH HOH . L 6 HOH A 133 733 133 HOH HOH . L 6 HOH A 134 734 134 HOH HOH . L 6 HOH A 135 735 135 HOH HOH . L 6 HOH A 136 736 136 HOH HOH . L 6 HOH A 137 737 137 HOH HOH . L 6 HOH A 138 738 138 HOH HOH . L 6 HOH A 139 739 139 HOH HOH . L 6 HOH A 140 740 140 HOH HOH . L 6 HOH A 141 741 141 HOH HOH . L 6 HOH A 142 742 142 HOH HOH . L 6 HOH A 143 743 143 HOH HOH . L 6 HOH A 144 744 144 HOH HOH . L 6 HOH A 145 745 145 HOH HOH . L 6 HOH A 146 746 146 HOH HOH . L 6 HOH A 147 747 147 HOH HOH . L 6 HOH A 148 748 148 HOH HOH . L 6 HOH A 149 749 149 HOH HOH . L 6 HOH A 150 750 150 HOH HOH . L 6 HOH A 151 751 151 HOH HOH . L 6 HOH A 152 752 152 HOH HOH . L 6 HOH A 153 753 153 HOH HOH . L 6 HOH A 154 754 154 HOH HOH . L 6 HOH A 155 755 155 HOH HOH . L 6 HOH A 156 756 156 HOH HOH . L 6 HOH A 157 757 157 HOH HOH . L 6 HOH A 158 758 158 HOH HOH . L 6 HOH A 159 759 159 HOH HOH . L 6 HOH A 160 760 160 HOH HOH . L 6 HOH A 161 761 161 HOH HOH . L 6 HOH A 162 762 162 HOH HOH . L 6 HOH A 163 763 163 HOH HOH . L 6 HOH A 164 764 164 HOH HOH . L 6 HOH A 165 765 165 HOH HOH . L 6 HOH A 166 766 166 HOH HOH . L 6 HOH A 167 767 167 HOH HOH . L 6 HOH A 168 768 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 35.081 -15.313 22.26 1 61.89 ? C1 EDO 508 A 1 HETATM 2 O O1 EDO . . . I 5 34.997 -14.533 21.051 1 59.69 ? O1 EDO 508 A 1 HETATM 3 C C2 EDO . . . I 5 36.429 -16.011 22.325 1 62.85 ? C2 EDO 508 A 1 HETATM 4 O O2 EDO . . . I 5 37.433 -15.076 22.739 1 60.91 ? O2 EDO 508 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #