data_4GL5 # _model_server_result.job_id wzCQNxRRjKMQs640tPkONQ _model_server_result.datetime_utc '2025-03-04 14:08:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 4GL5 # _exptl.entry_id 4GL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GL5 _cell.length_a 140.329 _cell.length_b 140.329 _cell.length_c 118.733 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 437 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.307 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 186 n n CHA C4D HEM doub 187 n n CHA HHA HEM sing 188 n n CHB C4A HEM sing 189 n n CHB C1B HEM doub 190 n n CHB HHB HEM sing 191 n n CHC C4B HEM sing 192 n n CHC C1C HEM doub 193 n n CHC HHC HEM sing 194 n n CHD C4C HEM doub 195 n n CHD C1D HEM sing 196 n n CHD HHD HEM sing 197 n n C1A C2A HEM doub 198 n y C1A NA HEM sing 199 n y C2A C3A HEM sing 200 n y C2A CAA HEM sing 201 n n C3A C4A HEM doub 202 n y C3A CMA HEM sing 203 n n C4A NA HEM sing 204 n y CMA HMA HEM sing 205 n n CMA HMAA HEM sing 206 n n CMA HMAB HEM sing 207 n n CAA CBA HEM sing 208 n n CAA HAA HEM sing 209 n n CAA HAAA HEM sing 210 n n CBA CGA HEM sing 211 n n CBA HBA HEM sing 212 n n CBA HBAA HEM sing 213 n n CGA O1A HEM doub 214 n n CGA O2A HEM sing 215 n n C1B C2B HEM sing 216 n n C1B NB HEM sing 217 n n C2B C3B HEM doub 218 n n C2B CMB HEM sing 219 n n C3B C4B HEM sing 220 n n C3B CAB HEM sing 221 n n C4B NB HEM doub 222 n n CMB HMB HEM sing 223 n n CMB HMBA HEM sing 224 n n CMB HMBB HEM sing 225 n n CAB CBB HEM doub 226 n n CAB HAB HEM sing 227 n n CBB HBB HEM sing 228 n n CBB HBBA HEM sing 229 n n C1C C2C HEM sing 230 n y C1C NC HEM sing 231 n y C2C C3C HEM doub 232 n y C2C CMC HEM sing 233 n n C3C C4C HEM sing 234 n y C3C CAC HEM sing 235 n n C4C NC HEM sing 236 n y CMC HMC HEM sing 237 n n CMC HMCA HEM sing 238 n n CMC HMCB HEM sing 239 n n CAC CBC HEM doub 240 n n CAC HAC HEM sing 241 n n CBC HBC HEM sing 242 n n CBC HBCA HEM sing 243 n n C1D C2D HEM sing 244 n n C1D ND HEM doub 245 n n C2D C3D HEM doub 246 n n C2D CMD HEM sing 247 n n C3D C4D HEM sing 248 n n C3D CAD HEM sing 249 n n C4D ND HEM sing 250 n n CMD HMD HEM sing 251 n n CMD HMDA HEM sing 252 n n CMD HMDB HEM sing 253 n n CAD CBD HEM sing 254 n n CAD HAD HEM sing 255 n n CAD HADA HEM sing 256 n n CBD CGD HEM sing 257 n n CBD HBD HEM sing 258 n n CBD HBDA HEM sing 259 n n CGD O1D HEM doub 260 n n CGD O2D HEM sing 261 n n O2A H2A HEM sing 262 n n O2D H2D HEM sing 263 n n FE NA HEM sing 264 n n FE NB HEM sing 265 n n FE NC HEM sing 266 n n FE ND HEM sing 267 n n # _atom_sites.entry_id 4GL5 _atom_sites.fract_transf_matrix[1][1] 0.007126 _atom_sites.fract_transf_matrix[1][2] 0.004114 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 G29 A 1 601 601 G29 G29 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 86.485 52.452 41.104 1 58.04 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . B 2 81.953 51.183 42.167 1 58.58 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . B 2 83.438 46.692 43.245 1 59.75 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . B 2 87.97 47.878 42.033 1 59.12 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . B 2 85.121 52.484 41.264 1 58.16 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . B 2 84.257 53.601 40.947 1 58.26 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . B 2 83.01 53.246 41.236 1 57.86 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . B 2 83.039 51.9 41.747 1 57.97 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . B 2 81.747 54.108 41.063 1 57.91 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . B 2 84.702 54.959 40.368 1 59.08 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . B 2 84.824 54.83 38.852 1 60.81 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . B 2 84.65 56.179 38.208 1 61.91 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . B 2 85.43 57.111 38.531 1 62.99 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . B 2 83.732 56.324 37.364 1 62.45 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . B 2 81.974 49.888 42.617 1 59.35 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . B 2 80.866 49.173 43.206 1 60.03 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . B 2 81.287 47.951 43.502 1 61.12 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . B 2 82.668 47.829 43.11 1 60.47 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . B 2 79.448 49.73 43.452 1 60.96 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . B 2 80.456 46.828 44.144 1 63.65 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . B 2 79.395 46.352 43.482 1 65.46 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . B 2 84.782 46.608 42.983 1 59.32 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . B 2 85.599 45.421 43.119 1 59.7 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . B 2 86.86 45.749 42.791 1 59.65 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . B 2 86.871 47.156 42.437 1 59.17 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . B 2 85.077 44.037 43.572 1 59.61 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . B 2 88.093 44.812 42.782 1 59.52 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . B 2 88.355 44.005 43.822 1 59.66 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . B 2 88.004 49.222 41.703 1 58.85 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . B 2 89.204 49.964 41.385 1 58.04 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . B 2 88.743 51.389 41.093 1 57.85 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . B 2 87.313 51.373 41.264 1 58.02 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . B 2 90.643 49.425 41.356 1 57.54 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . B 2 89.626 52.58 40.707 1 58.12 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . B 2 89.682 52.669 39.191 1 59.39 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . B 2 90.469 53.9 38.813 1 60.89 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . B 2 91.427 53.774 38.004 1 61.58 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . B 2 90.151 55.012 39.323 1 61.58 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . B 2 84.34 51.46 41.746 1 58.1 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . B 2 83.058 49.042 42.573 1 59.39 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . B 2 85.585 47.646 42.554 1 58.75 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . B 2 86.914 50.092 41.621 1 58.71 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . B 2 84.942 49.574 42.106 1 58.53 ? FE HEM 600 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #