data_4GL7 # _model_server_result.job_id l7k-iTPOCbRjlSf3DSVCSg _model_server_result.datetime_utc '2024-11-22 23:02:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 4GL7 # _exptl.entry_id 4GL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GL7 _cell.length_a 141.445 _cell.length_b 141.445 _cell.length_c 118.851 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 437 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.603 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 189 n n CHA C4D HEM doub 190 n n CHA HHA HEM sing 191 n n CHB C4A HEM sing 192 n n CHB C1B HEM doub 193 n n CHB HHB HEM sing 194 n n CHC C4B HEM sing 195 n n CHC C1C HEM doub 196 n n CHC HHC HEM sing 197 n n CHD C4C HEM doub 198 n n CHD C1D HEM sing 199 n n CHD HHD HEM sing 200 n n C1A C2A HEM doub 201 n y C1A NA HEM sing 202 n y C2A C3A HEM sing 203 n y C2A CAA HEM sing 204 n n C3A C4A HEM doub 205 n y C3A CMA HEM sing 206 n n C4A NA HEM sing 207 n y CMA HMA HEM sing 208 n n CMA HMAA HEM sing 209 n n CMA HMAB HEM sing 210 n n CAA CBA HEM sing 211 n n CAA HAA HEM sing 212 n n CAA HAAA HEM sing 213 n n CBA CGA HEM sing 214 n n CBA HBA HEM sing 215 n n CBA HBAA HEM sing 216 n n CGA O1A HEM doub 217 n n CGA O2A HEM sing 218 n n C1B C2B HEM sing 219 n n C1B NB HEM sing 220 n n C2B C3B HEM doub 221 n n C2B CMB HEM sing 222 n n C3B C4B HEM sing 223 n n C3B CAB HEM sing 224 n n C4B NB HEM doub 225 n n CMB HMB HEM sing 226 n n CMB HMBA HEM sing 227 n n CMB HMBB HEM sing 228 n n CAB CBB HEM doub 229 n n CAB HAB HEM sing 230 n n CBB HBB HEM sing 231 n n CBB HBBA HEM sing 232 n n C1C C2C HEM sing 233 n y C1C NC HEM sing 234 n y C2C C3C HEM doub 235 n y C2C CMC HEM sing 236 n n C3C C4C HEM sing 237 n y C3C CAC HEM sing 238 n n C4C NC HEM sing 239 n y CMC HMC HEM sing 240 n n CMC HMCA HEM sing 241 n n CMC HMCB HEM sing 242 n n CAC CBC HEM doub 243 n n CAC HAC HEM sing 244 n n CBC HBC HEM sing 245 n n CBC HBCA HEM sing 246 n n C1D C2D HEM sing 247 n n C1D ND HEM doub 248 n n C2D C3D HEM doub 249 n n C2D CMD HEM sing 250 n n C3D C4D HEM sing 251 n n C3D CAD HEM sing 252 n n C4D ND HEM sing 253 n n CMD HMD HEM sing 254 n n CMD HMDA HEM sing 255 n n CMD HMDB HEM sing 256 n n CAD CBD HEM sing 257 n n CAD HAD HEM sing 258 n n CAD HADA HEM sing 259 n n CBD CGD HEM sing 260 n n CBD HBD HEM sing 261 n n CBD HBDA HEM sing 262 n n CGD O1D HEM doub 263 n n CGD O2D HEM sing 264 n n O2A H2A HEM sing 265 n n O2D H2D HEM sing 266 n n FE NA HEM sing 267 n n FE NB HEM sing 268 n n FE NC HEM sing 269 n n FE ND HEM sing 270 n n # _atom_sites.entry_id 4GL7 _atom_sites.fract_transf_matrix[1][1] 0.00707 _atom_sites.fract_transf_matrix[1][2] 0.004082 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 0XJ A 1 601 601 0XJ G46 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 87.33 53.069 41.252 1 96.76 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . B 2 82.801 51.656 42.253 1 96.6 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . B 2 84.385 47.217 43.19 1 96.84 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . B 2 88.864 48.582 42.205 1 96.18 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . B 2 85.971 53.037 41.446 1 98.27 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . B 2 85.117 54.177 41.246 1 100.96 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . B 2 83.858 53.805 41.511 1 99.42 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . B 2 83.882 52.406 41.887 1 97.44 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . B 2 82.604 54.709 41.429 1 98.76 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . B 2 85.622 55.572 40.792 1 105.69 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . B 2 86.127 55.482 39.349 1 111.21 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . B 2 85.523 56.553 38.467 1 114.46 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . B 2 86.025 57.725 38.529 1 115.49 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . B 2 84.555 56.212 37.708 1 115.68 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . B 2 82.856 50.38 42.73 1 96.57 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . B 2 81.837 49.651 43.469 1 97.37 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . B 2 82.302 48.432 43.714 1 97.63 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . B 2 83.616 48.344 43.148 1 97.14 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . B 2 80.448 50.153 43.911 1 98.17 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . B 2 81.591 47.284 44.461 1 98.58 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . B 2 80.806 46.44 43.787 1 98.97 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . B 2 85.725 47.215 42.984 1 97.1 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . B 2 86.564 46.059 43.139 1 98.23 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . B 2 87.829 46.432 42.874 1 97.4 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . B 2 87.778 47.841 42.546 1 96.28 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . B 2 86.018 44.668 43.554 1 99.99 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . B 2 89.136 45.577 42.887 1 96.51 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . B 2 89.127 44.238 42.944 1 95.8 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . B 2 88.873 49.91 41.894 1 95.97 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . B 2 90.077 50.654 41.652 1 95.41 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . B 2 89.602 52.068 41.362 1 95.15 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . B 2 88.174 52.022 41.445 1 95.99 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . B 2 91.504 50.085 41.711 1 95.09 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . B 2 90.438 53.276 41.02 1 96.22 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . B 2 90.542 53.215 39.509 1 99.66 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . B 2 91.495 54.306 39.093 1 102.84 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . B 2 92.681 53.994 38.766 1 104.21 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . B 2 91.073 55.498 39.109 1 104.31 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . B 2 85.18 51.964 41.817 1 96.85 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . B 2 83.931 49.554 42.551 1 96.47 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . B 2 86.483 48.293 42.601 1 96.12 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . B 2 87.766 50.738 41.758 1 96.27 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . B 2 85.791 50.17 42.165 1 95.89 ? FE HEM 600 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #