data_4GLB # _model_server_result.job_id 0SfQ46h0I_hdoxoMOnQyTA _model_server_result.datetime_utc '2024-11-14 20:14:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4glb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4GLB # _exptl.entry_id 4GLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GLB _cell.length_a 139.911 _cell.length_b 139.911 _cell.length_c 80.448 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 36 A CYS 36 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 B SG CYS 36 B CYS 36 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4GLB _atom_sites.fract_transf_matrix[1][1] 0.007147 _atom_sites.fract_transf_matrix[1][2] 0.004127 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XXH A 1 301 307 XXH XXH . D 3 GOL A 1 302 1 GOL GOL . E 2 XXH B 1 301 308 XXH XXH . F 3 GOL B 1 302 2 GOL GOL . G 4 HOH A 1 401 3 HOH HOH . G 4 HOH A 2 402 7 HOH HOH . G 4 HOH A 3 403 8 HOH HOH . G 4 HOH A 4 404 9 HOH HOH . G 4 HOH A 5 405 10 HOH HOH . G 4 HOH A 6 406 11 HOH HOH . G 4 HOH A 7 407 14 HOH HOH . G 4 HOH A 8 408 16 HOH HOH . G 4 HOH A 9 409 18 HOH HOH . G 4 HOH A 10 410 21 HOH HOH . G 4 HOH A 11 411 25 HOH HOH . G 4 HOH A 12 412 26 HOH HOH . G 4 HOH A 13 413 27 HOH HOH . G 4 HOH A 14 414 28 HOH HOH . G 4 HOH A 15 415 29 HOH HOH . G 4 HOH A 16 416 30 HOH HOH . G 4 HOH A 17 417 31 HOH HOH . G 4 HOH A 18 418 34 HOH HOH . G 4 HOH A 19 419 35 HOH HOH . G 4 HOH A 20 420 36 HOH HOH . G 4 HOH A 21 421 37 HOH HOH . G 4 HOH A 22 422 38 HOH HOH . G 4 HOH A 23 423 40 HOH HOH . G 4 HOH A 24 424 43 HOH HOH . G 4 HOH A 25 425 44 HOH HOH . G 4 HOH A 26 426 45 HOH HOH . G 4 HOH A 27 427 47 HOH HOH . G 4 HOH A 28 428 48 HOH HOH . G 4 HOH A 29 429 49 HOH HOH . G 4 HOH A 30 430 50 HOH HOH . G 4 HOH A 31 431 55 HOH HOH . G 4 HOH A 32 432 59 HOH HOH . G 4 HOH A 33 433 61 HOH HOH . G 4 HOH A 34 434 68 HOH HOH . G 4 HOH A 35 435 71 HOH HOH . G 4 HOH A 36 436 75 HOH HOH . G 4 HOH A 37 437 76 HOH HOH . G 4 HOH A 38 438 79 HOH HOH . G 4 HOH A 39 439 80 HOH HOH . G 4 HOH A 40 440 93 HOH HOH . G 4 HOH A 41 441 95 HOH HOH . G 4 HOH A 42 442 96 HOH HOH . G 4 HOH A 43 443 97 HOH HOH . G 4 HOH A 44 444 98 HOH HOH . G 4 HOH A 45 445 99 HOH HOH . G 4 HOH A 46 446 100 HOH HOH . G 4 HOH A 47 447 101 HOH HOH . G 4 HOH A 48 448 102 HOH HOH . G 4 HOH A 49 449 103 HOH HOH . G 4 HOH A 50 450 104 HOH HOH . G 4 HOH A 51 451 105 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 4 HOH HOH . H 4 HOH B 4 404 5 HOH HOH . H 4 HOH B 5 405 6 HOH HOH . H 4 HOH B 6 406 12 HOH HOH . H 4 HOH B 7 407 13 HOH HOH . H 4 HOH B 8 408 15 HOH HOH . H 4 HOH B 9 409 17 HOH HOH . H 4 HOH B 10 410 19 HOH HOH . H 4 HOH B 11 411 20 HOH HOH . H 4 HOH B 12 412 22 HOH HOH . H 4 HOH B 13 413 23 HOH HOH . H 4 HOH B 14 414 24 HOH HOH . H 4 HOH B 15 415 32 HOH HOH . H 4 HOH B 16 416 33 HOH HOH . H 4 HOH B 17 417 39 HOH HOH . H 4 HOH B 18 418 41 HOH HOH . H 4 HOH B 19 419 42 HOH HOH . H 4 HOH B 20 420 46 HOH HOH . H 4 HOH B 21 421 51 HOH HOH . H 4 HOH B 22 422 52 HOH HOH . H 4 HOH B 23 423 53 HOH HOH . H 4 HOH B 24 424 54 HOH HOH . H 4 HOH B 25 425 56 HOH HOH . H 4 HOH B 26 426 57 HOH HOH . H 4 HOH B 27 427 58 HOH HOH . H 4 HOH B 28 428 60 HOH HOH . H 4 HOH B 29 429 62 HOH HOH . H 4 HOH B 30 430 63 HOH HOH . H 4 HOH B 31 431 64 HOH HOH . H 4 HOH B 32 432 65 HOH HOH . H 4 HOH B 33 433 66 HOH HOH . H 4 HOH B 34 434 67 HOH HOH . H 4 HOH B 35 435 69 HOH HOH . H 4 HOH B 36 436 70 HOH HOH . H 4 HOH B 37 437 72 HOH HOH . H 4 HOH B 38 438 73 HOH HOH . H 4 HOH B 39 439 74 HOH HOH . H 4 HOH B 40 440 77 HOH HOH . H 4 HOH B 41 441 78 HOH HOH . H 4 HOH B 42 442 81 HOH HOH . H 4 HOH B 43 443 82 HOH HOH . H 4 HOH B 44 444 83 HOH HOH . H 4 HOH B 45 445 84 HOH HOH . H 4 HOH B 46 446 85 HOH HOH . H 4 HOH B 47 447 86 HOH HOH . H 4 HOH B 48 448 87 HOH HOH . H 4 HOH B 49 449 88 HOH HOH . H 4 HOH B 50 450 89 HOH HOH . H 4 HOH B 51 451 90 HOH HOH . H 4 HOH B 52 452 91 HOH HOH . H 4 HOH B 53 453 92 HOH HOH . H 4 HOH B 54 454 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -63.914 3.516 8.268 1 43.22 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 3 -65.145 3.6 8.955 1 44.94 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 3 -64.08 2.515 7.137 1 42.2 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 3 -64.307 3.229 5.948 1 42.56 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 3 -62.804 1.695 7.014 1 41.05 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 3 -62.982 0.666 6.07 1 39.05 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #