data_4GLJ # _model_server_result.job_id suCKrstBvD5xT7aRBuMdtA _model_server_result.datetime_utc '2024-12-27 01:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4glj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4GLJ # _exptl.entry_id 4GLJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[9-(2-carboxyphenyl)-6-(diethylamino)-3H-xanthen-3-ylidene]-N-ethylethanaminium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GLJ _cell.length_a 80.26 _cell.length_b 80.26 _cell.length_c 81.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GLJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 80.26 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 40.13 69.507199 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C28 H31 N2 O3 1' _chem_comp.formula_weight 443.557 _chem_comp.id RHB _chem_comp.mon_nstd_flag . _chem_comp.name N-[9-(2-carboxyphenyl)-6-(diethylamino)-3H-xanthen-3-ylidene]-N-ethylethanaminium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 H30 RHB sing 281 n n C26 O3 RHB doub 282 n n C26 O2 RHB sing 283 n n C19 C26 RHB sing 284 n n C14 C19 RHB sing 285 n y C14 C9 RHB sing 286 n n C15 C14 RHB doub 287 n y C15 H1 RHB sing 288 n n C16 C17 RHB doub 289 n y C16 C15 RHB sing 290 n y C16 H2 RHB sing 291 n n C17 C18 RHB sing 292 n y C17 H3 RHB sing 293 n n C18 C19 RHB doub 294 n y C18 H4 RHB sing 295 n n C9 C2 RHB doub 296 n n C8 C9 RHB sing 297 n n C8 C7 RHB sing 298 n y C13 C8 RHB doub 299 n y C13 H5 RHB sing 300 n n C12 C13 RHB sing 301 n y C12 C11 RHB doub 302 n y C12 H6 RHB sing 303 n n C11 C10 RHB sing 304 n y N1 C11 RHB sing 305 n n N1 C22 RHB sing 306 n n C35 N1 RHB sing 307 n n C35 H7 RHB sing 308 n n C35 H8 RHB sing 309 n n C36 C35 RHB sing 310 n n C36 H9 RHB sing 311 n n C36 H10 RHB sing 312 n n C36 H11 RHB sing 313 n n C22 C23 RHB sing 314 n n C22 H12 RHB sing 315 n n C22 H13 RHB sing 316 n n C23 H14 RHB sing 317 n n C23 H15 RHB sing 318 n n C23 H16 RHB sing 319 n n C10 C7 RHB doub 320 n y C10 H17 RHB sing 321 n n C7 O1 RHB sing 322 n n O1 C1 RHB sing 323 n n C1 C6 RHB doub 324 n n C2 C3 RHB sing 325 n n C2 C1 RHB sing 326 n n C6 C5 RHB sing 327 n n C6 H18 RHB sing 328 n n C5 N2 RHB doub 329 n n C4 C5 RHB sing 330 n n C4 H19 RHB sing 331 n n C3 C4 RHB doub 332 n n C3 H31 RHB sing 333 n n N2 C33 RHB sing 334 n n N2 C24 RHB sing 335 n n C24 C25 RHB sing 336 n n C24 H20 RHB sing 337 n n C24 H21 RHB sing 338 n n C25 H22 RHB sing 339 n n C25 H23 RHB sing 340 n n C25 H24 RHB sing 341 n n C33 C34 RHB sing 342 n n C33 H25 RHB sing 343 n n C33 H26 RHB sing 344 n n C34 H27 RHB sing 345 n n C34 H28 RHB sing 346 n n C34 H29 RHB sing 347 n n # _atom_sites.entry_id 4GLJ _atom_sites.fract_transf_matrix[1][1] 0.01246 _atom_sites.fract_transf_matrix[1][2] 0.007193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RHB A 1 301 1 RHB RHB . C 2 RHB A 1 302 2 RHB RHB . D 3 PO4 A 1 303 1 PO4 PO4 . E 4 CL A 1 304 1 CL CL . F 4 CL A 1 305 2 CL CL . G 5 HOH A 1 401 1 HOH HOH . G 5 HOH A 2 402 2 HOH HOH . G 5 HOH A 3 403 3 HOH HOH . G 5 HOH A 4 404 4 HOH HOH . G 5 HOH A 5 405 5 HOH HOH . G 5 HOH A 6 406 6 HOH HOH . G 5 HOH A 7 407 7 HOH HOH . G 5 HOH A 8 408 8 HOH HOH . G 5 HOH A 9 409 9 HOH HOH . G 5 HOH A 10 410 10 HOH HOH . G 5 HOH A 11 411 11 HOH HOH . G 5 HOH A 12 412 12 HOH HOH . G 5 HOH A 13 413 13 HOH HOH . G 5 HOH A 14 414 14 HOH HOH . G 5 HOH A 15 415 15 HOH HOH . G 5 HOH A 16 416 16 HOH HOH . G 5 HOH A 17 417 17 HOH HOH . G 5 HOH A 18 418 18 HOH HOH . G 5 HOH A 19 419 19 HOH HOH . G 5 HOH A 20 420 20 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . G 5 HOH A 22 422 22 HOH HOH . G 5 HOH A 23 423 23 HOH HOH . G 5 HOH A 24 424 24 HOH HOH . G 5 HOH A 25 425 25 HOH HOH . G 5 HOH A 26 426 26 HOH HOH . G 5 HOH A 27 427 27 HOH HOH . G 5 HOH A 28 428 28 HOH HOH . G 5 HOH A 29 429 29 HOH HOH . G 5 HOH A 30 430 30 HOH HOH . G 5 HOH A 31 431 31 HOH HOH . G 5 HOH A 32 432 32 HOH HOH . G 5 HOH A 33 433 33 HOH HOH . G 5 HOH A 34 434 34 HOH HOH . G 5 HOH A 35 435 35 HOH HOH . G 5 HOH A 36 436 36 HOH HOH . G 5 HOH A 37 437 37 HOH HOH . G 5 HOH A 38 438 38 HOH HOH . G 5 HOH A 39 439 39 HOH HOH . G 5 HOH A 40 440 40 HOH HOH . G 5 HOH A 41 441 41 HOH HOH . G 5 HOH A 42 442 42 HOH HOH . G 5 HOH A 43 443 43 HOH HOH . G 5 HOH A 44 444 44 HOH HOH . G 5 HOH A 45 445 45 HOH HOH . G 5 HOH A 46 446 46 HOH HOH . G 5 HOH A 47 447 47 HOH HOH . G 5 HOH A 48 448 48 HOH HOH . G 5 HOH A 49 449 49 HOH HOH . G 5 HOH A 50 450 50 HOH HOH . G 5 HOH A 51 451 51 HOH HOH . G 5 HOH A 52 452 52 HOH HOH . G 5 HOH A 53 453 53 HOH HOH . G 5 HOH A 54 454 54 HOH HOH . G 5 HOH A 55 455 55 HOH HOH . G 5 HOH A 56 456 56 HOH HOH . G 5 HOH A 57 457 57 HOH HOH . G 5 HOH A 58 458 58 HOH HOH . G 5 HOH A 59 459 59 HOH HOH . G 5 HOH A 60 460 60 HOH HOH . G 5 HOH A 61 461 61 HOH HOH . G 5 HOH A 62 462 62 HOH HOH . G 5 HOH A 63 463 63 HOH HOH . G 5 HOH A 64 464 64 HOH HOH . G 5 HOH A 65 465 65 HOH HOH . G 5 HOH A 66 466 66 HOH HOH . G 5 HOH A 67 467 67 HOH HOH . G 5 HOH A 68 468 68 HOH HOH . G 5 HOH A 69 469 69 HOH HOH . G 5 HOH A 70 470 70 HOH HOH . G 5 HOH A 71 471 71 HOH HOH . G 5 HOH A 72 472 72 HOH HOH . G 5 HOH A 73 473 73 HOH HOH . G 5 HOH A 74 474 74 HOH HOH . G 5 HOH A 75 475 75 HOH HOH . G 5 HOH A 76 476 76 HOH HOH . G 5 HOH A 77 477 77 HOH HOH . G 5 HOH A 78 478 78 HOH HOH . G 5 HOH A 79 479 79 HOH HOH . G 5 HOH A 80 480 80 HOH HOH . G 5 HOH A 81 481 81 HOH HOH . G 5 HOH A 82 482 82 HOH HOH . G 5 HOH A 83 483 83 HOH HOH . G 5 HOH A 84 484 84 HOH HOH . G 5 HOH A 85 485 85 HOH HOH . G 5 HOH A 86 486 86 HOH HOH . G 5 HOH A 87 487 87 HOH HOH . G 5 HOH A 88 488 88 HOH HOH . G 5 HOH A 89 489 89 HOH HOH . G 5 HOH A 90 490 90 HOH HOH . G 5 HOH A 91 491 91 HOH HOH . G 5 HOH A 92 492 92 HOH HOH . G 5 HOH A 93 493 93 HOH HOH . G 5 HOH A 94 494 94 HOH HOH . G 5 HOH A 95 495 95 HOH HOH . G 5 HOH A 96 496 96 HOH HOH . G 5 HOH A 97 497 97 HOH HOH . G 5 HOH A 98 498 98 HOH HOH . G 5 HOH A 99 499 99 HOH HOH . G 5 HOH A 100 500 100 HOH HOH . G 5 HOH A 101 501 101 HOH HOH . G 5 HOH A 102 502 102 HOH HOH . G 5 HOH A 103 503 103 HOH HOH . G 5 HOH A 104 504 104 HOH HOH . G 5 HOH A 105 505 105 HOH HOH . G 5 HOH A 106 506 106 HOH HOH . G 5 HOH A 107 507 107 HOH HOH . G 5 HOH A 108 508 108 HOH HOH . G 5 HOH A 109 509 109 HOH HOH . G 5 HOH A 110 510 110 HOH HOH . G 5 HOH A 111 511 111 HOH HOH . G 5 HOH A 112 512 112 HOH HOH . G 5 HOH A 113 513 113 HOH HOH . G 5 HOH A 114 514 114 HOH HOH . G 5 HOH A 115 515 115 HOH HOH . G 5 HOH A 116 516 116 HOH HOH . G 5 HOH A 117 517 117 HOH HOH . G 5 HOH A 118 518 118 HOH HOH . G 5 HOH A 119 519 119 HOH HOH . G 5 HOH A 120 520 120 HOH HOH . G 5 HOH A 121 521 121 HOH HOH . G 5 HOH A 122 522 122 HOH HOH . G 5 HOH A 123 523 123 HOH HOH . G 5 HOH A 124 524 124 HOH HOH . G 5 HOH A 125 525 125 HOH HOH . G 5 HOH A 126 526 126 HOH HOH . G 5 HOH A 127 527 127 HOH HOH . G 5 HOH A 128 528 128 HOH HOH . G 5 HOH A 129 529 129 HOH HOH . G 5 HOH A 130 530 130 HOH HOH . G 5 HOH A 131 531 131 HOH HOH . G 5 HOH A 132 532 132 HOH HOH . G 5 HOH A 133 533 133 HOH HOH . G 5 HOH A 134 534 134 HOH HOH . G 5 HOH A 135 535 135 HOH HOH . G 5 HOH A 136 536 136 HOH HOH . G 5 HOH A 137 537 137 HOH HOH . G 5 HOH A 138 538 138 HOH HOH . G 5 HOH A 139 539 139 HOH HOH . G 5 HOH A 140 540 140 HOH HOH . G 5 HOH A 141 541 141 HOH HOH . G 5 HOH A 142 542 142 HOH HOH . G 5 HOH A 143 543 143 HOH HOH . G 5 HOH A 144 544 144 HOH HOH . G 5 HOH A 145 545 145 HOH HOH . G 5 HOH A 146 546 146 HOH HOH . G 5 HOH A 147 547 147 HOH HOH . G 5 HOH A 148 548 148 HOH HOH . G 5 HOH A 149 549 149 HOH HOH . G 5 HOH A 150 550 150 HOH HOH . G 5 HOH A 151 551 151 HOH HOH . G 5 HOH A 152 552 152 HOH HOH . G 5 HOH A 153 553 153 HOH HOH . G 5 HOH A 154 554 154 HOH HOH . G 5 HOH A 155 555 155 HOH HOH . G 5 HOH A 156 556 156 HOH HOH . G 5 HOH A 157 557 157 HOH HOH . G 5 HOH A 158 558 158 HOH HOH . G 5 HOH A 159 559 159 HOH HOH . G 5 HOH A 160 560 160 HOH HOH . G 5 HOH A 161 561 161 HOH HOH . G 5 HOH A 162 562 162 HOH HOH . G 5 HOH A 163 563 163 HOH HOH . G 5 HOH A 164 564 164 HOH HOH . G 5 HOH A 165 565 165 HOH HOH . G 5 HOH A 166 566 166 HOH HOH . G 5 HOH A 167 567 167 HOH HOH . G 5 HOH A 168 568 168 HOH HOH . G 5 HOH A 169 569 169 HOH HOH . G 5 HOH A 170 570 170 HOH HOH . G 5 HOH A 171 571 171 HOH HOH . G 5 HOH A 172 572 172 HOH HOH . G 5 HOH A 173 573 173 HOH HOH . G 5 HOH A 174 574 174 HOH HOH . G 5 HOH A 175 575 175 HOH HOH . G 5 HOH A 176 576 176 HOH HOH . G 5 HOH A 177 577 177 HOH HOH . G 5 HOH A 178 578 178 HOH HOH . G 5 HOH A 179 579 179 HOH HOH . G 5 HOH A 180 580 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 RHB . . . B 2 45.441 48.586 58.426 0.5 66.92 ? O2 RHB 301 A 1 HETATM 2 C C26 RHB . . . B 2 46.399 48.403 57.651 0.5 60.23 ? C26 RHB 301 A 1 HETATM 3 C C19 RHB . . . B 2 46.289 47.443 56.512 0.5 60.24 ? C19 RHB 301 A 1 HETATM 4 C C14 RHB . . . B 2 45.127 46.815 56.066 0.5 62.86 ? C14 RHB 301 A 1 HETATM 5 C C15 RHB . . . B 2 45.222 45.965 54.972 0.5 59.21 ? C15 RHB 301 A 1 HETATM 6 C C16 RHB . . . B 2 46.415 45.716 54.323 0.5 58.08 ? C16 RHB 301 A 1 HETATM 7 C C17 RHB . . . B 2 47.559 46.328 54.772 0.5 61.58 ? C17 RHB 301 A 1 HETATM 8 C C18 RHB . . . B 2 47.477 47.191 55.855 0.5 63.53 ? C18 RHB 301 A 1 HETATM 9 C C9 RHB . . . B 2 43.738 46.938 56.611 0.5 60.36 ? C9 RHB 301 A 1 HETATM 10 C C8 RHB . . . B 2 42.799 45.821 56.29 0.5 60.89 ? C8 RHB 301 A 1 HETATM 11 C C13 RHB . . . B 2 43.192 44.721 55.542 0.5 61.68 ? C13 RHB 301 A 1 HETATM 12 C C12 RHB . . . B 2 42.316 43.674 55.244 0.5 59.46 ? C12 RHB 301 A 1 HETATM 13 C C11 RHB . . . B 2 41.026 43.698 55.724 0.5 53.47 ? C11 RHB 301 A 1 HETATM 14 N N1 RHB . . . B 2 40.096 42.686 55.396 0.5 51.53 ? N1 RHB 301 A 1 HETATM 15 C C35 RHB . . . B 2 40.361 42.444 53.965 0.5 52.21 ? C35 RHB 301 A 1 HETATM 16 C C36 RHB . . . B 2 40.522 43.812 53.322 0.5 50.82 ? C36 RHB 301 A 1 HETATM 17 C C22 RHB . . . B 2 40.034 41.422 56.186 0.5 39.14 ? C22 RHB 301 A 1 HETATM 18 C C23 RHB . . . B 2 39.043 41.575 57.351 0.5 29.09 ? C23 RHB 301 A 1 HETATM 19 C C10 RHB . . . B 2 40.638 44.82 56.443 0.5 58.43 ? C10 RHB 301 A 1 HETATM 20 C C7 RHB . . . B 2 41.509 45.861 56.742 0.5 58.41 ? C7 RHB 301 A 1 HETATM 21 O O1 RHB . . . B 2 41.073 46.929 57.484 0.5 63.77 ? O1 RHB 301 A 1 HETATM 22 C C1 RHB . . . B 2 41.858 48.001 57.815 0.5 60.04 ? C1 RHB 301 A 1 HETATM 23 C C2 RHB . . . B 2 43.186 48.075 57.416 0.5 63.94 ? C2 RHB 301 A 1 HETATM 24 C C6 RHB . . . B 2 41.291 49.014 58.573 0.5 60.85 ? C6 RHB 301 A 1 HETATM 25 C C5 RHB . . . B 2 42.03 50.119 58.949 0.5 61.05 ? C5 RHB 301 A 1 HETATM 26 C C4 RHB . . . B 2 43.36 50.21 58.561 0.5 65.3 ? C4 RHB 301 A 1 HETATM 27 C C3 RHB . . . B 2 43.936 49.192 57.795 0.5 62.85 ? C3 RHB 301 A 1 HETATM 28 N N2 RHB . . . B 2 41.404 51.129 59.703 0.5 62.98 ? N2 RHB 301 A 1 HETATM 29 C C24 RHB . . . B 2 41.027 50.666 61.054 0.5 58.4 ? C24 RHB 301 A 1 HETATM 30 C C25 RHB . . . B 2 39.857 51.499 61.54 0.5 58.06 ? C25 RHB 301 A 1 HETATM 31 C C33 RHB . . . B 2 42.252 52.338 59.758 0.5 63.62 ? C33 RHB 301 A 1 HETATM 32 C C34 RHB . . . B 2 41.363 53.546 59.982 0.5 62.31 ? C34 RHB 301 A 1 HETATM 33 O O3 RHB . . . B 2 47.466 49.036 57.768 0.5 58.66 ? O3 RHB 301 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #