data_4GLL # _model_server_result.job_id KZvWP-eNwtwkS624G-JMOA _model_server_result.datetime_utc '2024-10-15 11:30:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4GLL # _exptl.entry_id 4GLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GLL _cell.length_a 125.61 _cell.length_b 125.61 _cell.length_c 98.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 245 n n PA O2A NAD sing 246 n n PA O5B NAD sing 247 n n PA O3 NAD sing 248 n n O2A HOA2 NAD sing 249 n n O5B C5B NAD sing 250 n n C5B C4B NAD sing 251 n n C5B H51A NAD sing 252 n n C5B H52A NAD sing 253 n n C4B O4B NAD sing 254 n n C4B C3B NAD sing 255 n n C4B H4B NAD sing 256 n n O4B C1B NAD sing 257 n n C3B O3B NAD sing 258 n n C3B C2B NAD sing 259 n n C3B H3B NAD sing 260 n n O3B HO3A NAD sing 261 n n C2B O2B NAD sing 262 n n C2B C1B NAD sing 263 n n C2B H2B NAD sing 264 n n O2B HO2A NAD sing 265 n n C1B N9A NAD sing 266 n n C1B H1B NAD sing 267 n n N9A C8A NAD sing 268 n y N9A C4A NAD sing 269 n y C8A N7A NAD doub 270 n y C8A H8A NAD sing 271 n n N7A C5A NAD sing 272 n y C5A C6A NAD sing 273 n y C5A C4A NAD doub 274 n y C6A N6A NAD sing 275 n n C6A N1A NAD doub 276 n y N6A H61A NAD sing 277 n n N6A H62A NAD sing 278 n n N1A C2A NAD sing 279 n y C2A N3A NAD doub 280 n y C2A H2A NAD sing 281 n n N3A C4A NAD sing 282 n y O3 PN NAD sing 283 n n PN O1N NAD doub 284 n n PN O2N NAD sing 285 n n PN O5D NAD sing 286 n n O5D C5D NAD sing 287 n n C5D C4D NAD sing 288 n n C5D H51N NAD sing 289 n n C5D H52N NAD sing 290 n n C4D O4D NAD sing 291 n n C4D C3D NAD sing 292 n n C4D H4D NAD sing 293 n n O4D C1D NAD sing 294 n n C3D O3D NAD sing 295 n n C3D C2D NAD sing 296 n n C3D H3D NAD sing 297 n n O3D HO3N NAD sing 298 n n C2D O2D NAD sing 299 n n C2D C1D NAD sing 300 n n C2D H2D NAD sing 301 n n O2D HO2N NAD sing 302 n n C1D N1N NAD sing 303 n n C1D H1D NAD sing 304 n n N1N C2N NAD sing 305 n y N1N C6N NAD doub 306 n y C2N C3N NAD doub 307 n y C2N H2N NAD sing 308 n n C3N C7N NAD sing 309 n n C3N C4N NAD sing 310 n y C7N O7N NAD doub 311 n n C7N N7N NAD sing 312 n n N7N H71N NAD sing 313 n n N7N H72N NAD sing 314 n n C4N C5N NAD doub 315 n y C4N H4N NAD sing 316 n n C5N C6N NAD sing 317 n y C5N H5N NAD sing 318 n n C6N H6N NAD sing 319 n n # _atom_sites.entry_id 4GLL _atom_sites.fract_transf_matrix[1][1] 0.007961 _atom_sites.fract_transf_matrix[1][2] 0.004596 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 800 800 NAD NAD . D 3 GAI A 1 801 801 GAI GAI . E 4 SO4 A 1 802 802 SO4 SO4 . F 2 NAD B 1 501 501 NAD NAD . G 3 GAI B 1 502 502 GAI GAI . H 4 SO4 B 1 503 503 SO4 SO4 . I 5 HOH A 1 900 900 HOH HOH . I 5 HOH A 2 901 901 HOH HOH . I 5 HOH A 3 902 902 HOH HOH . I 5 HOH A 4 903 903 HOH HOH . I 5 HOH A 5 904 904 HOH HOH . I 5 HOH A 6 905 905 HOH HOH . I 5 HOH A 7 906 906 HOH HOH . I 5 HOH A 8 907 907 HOH HOH . I 5 HOH A 9 908 908 HOH HOH . I 5 HOH A 10 909 909 HOH HOH . I 5 HOH A 11 910 910 HOH HOH . I 5 HOH A 12 911 911 HOH HOH . I 5 HOH A 13 912 912 HOH HOH . I 5 HOH A 14 913 913 HOH HOH . I 5 HOH A 15 914 914 HOH HOH . I 5 HOH A 16 915 915 HOH HOH . I 5 HOH A 17 916 916 HOH HOH . I 5 HOH A 18 917 917 HOH HOH . I 5 HOH A 19 918 918 HOH HOH . I 5 HOH A 20 919 919 HOH HOH . I 5 HOH A 21 920 920 HOH HOH . I 5 HOH A 22 921 921 HOH HOH . I 5 HOH A 23 922 922 HOH HOH . I 5 HOH A 24 923 923 HOH HOH . I 5 HOH A 25 924 924 HOH HOH . I 5 HOH A 26 925 925 HOH HOH . I 5 HOH A 27 926 926 HOH HOH . I 5 HOH A 28 927 927 HOH HOH . I 5 HOH A 29 928 928 HOH HOH . I 5 HOH A 30 929 929 HOH HOH . I 5 HOH A 31 930 930 HOH HOH . I 5 HOH A 32 931 931 HOH HOH . I 5 HOH A 33 932 932 HOH HOH . I 5 HOH A 34 933 933 HOH HOH . I 5 HOH A 35 934 934 HOH HOH . I 5 HOH A 36 935 935 HOH HOH . I 5 HOH A 37 936 936 HOH HOH . I 5 HOH A 38 937 937 HOH HOH . I 5 HOH A 39 938 938 HOH HOH . I 5 HOH A 40 939 939 HOH HOH . I 5 HOH A 41 940 940 HOH HOH . I 5 HOH A 42 941 941 HOH HOH . I 5 HOH A 43 942 942 HOH HOH . I 5 HOH A 44 943 943 HOH HOH . I 5 HOH A 45 944 944 HOH HOH . I 5 HOH A 46 945 945 HOH HOH . I 5 HOH A 47 946 946 HOH HOH . I 5 HOH A 48 947 947 HOH HOH . I 5 HOH A 49 948 948 HOH HOH . I 5 HOH A 50 949 949 HOH HOH . I 5 HOH A 51 950 950 HOH HOH . I 5 HOH A 52 951 951 HOH HOH . I 5 HOH A 53 952 952 HOH HOH . I 5 HOH A 54 953 953 HOH HOH . I 5 HOH A 55 954 954 HOH HOH . I 5 HOH A 56 955 955 HOH HOH . I 5 HOH A 57 956 956 HOH HOH . I 5 HOH A 58 957 957 HOH HOH . I 5 HOH A 59 958 958 HOH HOH . I 5 HOH A 60 959 959 HOH HOH . I 5 HOH A 61 960 960 HOH HOH . I 5 HOH A 62 961 961 HOH HOH . I 5 HOH A 63 962 962 HOH HOH . I 5 HOH A 64 963 963 HOH HOH . I 5 HOH A 65 964 964 HOH HOH . I 5 HOH A 66 965 965 HOH HOH . I 5 HOH A 67 966 966 HOH HOH . I 5 HOH A 68 967 967 HOH HOH . I 5 HOH A 69 968 968 HOH HOH . I 5 HOH A 70 969 969 HOH HOH . J 5 HOH B 1 601 601 HOH HOH . J 5 HOH B 2 602 602 HOH HOH . J 5 HOH B 3 603 603 HOH HOH . J 5 HOH B 4 604 604 HOH HOH . J 5 HOH B 5 605 605 HOH HOH . J 5 HOH B 6 606 606 HOH HOH . J 5 HOH B 7 607 607 HOH HOH . J 5 HOH B 8 608 608 HOH HOH . J 5 HOH B 9 609 609 HOH HOH . J 5 HOH B 10 610 610 HOH HOH . J 5 HOH B 11 611 611 HOH HOH . J 5 HOH B 12 612 612 HOH HOH . J 5 HOH B 13 613 613 HOH HOH . J 5 HOH B 14 614 614 HOH HOH . J 5 HOH B 15 615 615 HOH HOH . J 5 HOH B 16 616 616 HOH HOH . J 5 HOH B 17 617 617 HOH HOH . J 5 HOH B 18 618 618 HOH HOH . J 5 HOH B 19 619 619 HOH HOH . J 5 HOH B 20 620 620 HOH HOH . J 5 HOH B 21 621 621 HOH HOH . J 5 HOH B 22 622 622 HOH HOH . J 5 HOH B 23 623 623 HOH HOH . J 5 HOH B 24 624 624 HOH HOH . J 5 HOH B 25 625 625 HOH HOH . J 5 HOH B 26 626 626 HOH HOH . J 5 HOH B 27 627 627 HOH HOH . J 5 HOH B 28 628 628 HOH HOH . J 5 HOH B 29 629 629 HOH HOH . J 5 HOH B 30 630 630 HOH HOH . J 5 HOH B 31 631 631 HOH HOH . J 5 HOH B 32 632 632 HOH HOH . J 5 HOH B 33 633 633 HOH HOH . J 5 HOH B 34 634 634 HOH HOH . J 5 HOH B 35 635 635 HOH HOH . J 5 HOH B 36 636 636 HOH HOH . J 5 HOH B 37 637 637 HOH HOH . J 5 HOH B 38 638 638 HOH HOH . J 5 HOH B 39 639 639 HOH HOH . J 5 HOH B 40 640 640 HOH HOH . J 5 HOH B 41 641 641 HOH HOH . J 5 HOH B 42 642 642 HOH HOH . J 5 HOH B 43 643 643 HOH HOH . J 5 HOH B 44 644 644 HOH HOH . J 5 HOH B 45 645 645 HOH HOH . J 5 HOH B 46 646 646 HOH HOH . J 5 HOH B 47 647 647 HOH HOH . J 5 HOH B 48 648 648 HOH HOH . J 5 HOH B 49 649 649 HOH HOH . J 5 HOH B 50 650 650 HOH HOH . J 5 HOH B 51 651 651 HOH HOH . J 5 HOH B 52 652 652 HOH HOH . J 5 HOH B 53 653 653 HOH HOH . J 5 HOH B 54 654 654 HOH HOH . J 5 HOH B 55 655 655 HOH HOH . J 5 HOH B 56 656 656 HOH HOH . J 5 HOH B 57 657 657 HOH HOH . J 5 HOH B 58 658 658 HOH HOH . J 5 HOH B 59 659 659 HOH HOH . J 5 HOH B 60 660 660 HOH HOH . J 5 HOH B 61 661 661 HOH HOH . J 5 HOH B 62 662 662 HOH HOH . J 5 HOH B 63 663 663 HOH HOH . J 5 HOH B 64 664 664 HOH HOH . J 5 HOH B 65 665 665 HOH HOH . J 5 HOH B 66 666 666 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 62.569 58.94 50.711 1 38.2 ? PA NAD 501 B 1 HETATM 2 O O1A NAD . . . F 2 63.075 60.288 51.081 1 39.75 ? O1A NAD 501 B 1 HETATM 3 O O2A NAD . . . F 2 61.727 58.321 51.747 1 33.3 ? O2A NAD 501 B 1 HETATM 4 O O5B NAD . . . F 2 61.767 59.015 49.327 1 38.91 ? O5B NAD 501 B 1 HETATM 5 C C5B NAD . . . F 2 60.618 58.214 49.178 1 38.6 ? C5B NAD 501 B 1 HETATM 6 C C4B NAD . . . F 2 59.479 59.097 48.717 1 39.92 ? C4B NAD 501 B 1 HETATM 7 O O4B NAD . . . F 2 58.491 58.233 48.222 1 38.05 ? O4B NAD 501 B 1 HETATM 8 C C3B NAD . . . F 2 58.874 59.888 49.881 1 40.7 ? C3B NAD 501 B 1 HETATM 9 O O3B NAD . . . F 2 58.577 61.193 49.422 1 37.49 ? O3B NAD 501 B 1 HETATM 10 C C2B NAD . . . F 2 57.584 59.119 50.158 1 41.24 ? C2B NAD 501 B 1 HETATM 11 O O2B NAD . . . F 2 56.533 59.927 50.666 1 39.69 ? O2B NAD 501 B 1 HETATM 12 C C1B NAD . . . F 2 57.247 58.537 48.791 1 37.98 ? C1B NAD 501 B 1 HETATM 13 N N9A NAD . . . F 2 56.374 57.358 48.881 1 34.73 ? N9A NAD 501 B 1 HETATM 14 C C8A NAD . . . F 2 56.511 56.277 49.716 1 33.37 ? C8A NAD 501 B 1 HETATM 15 N N7A NAD . . . F 2 55.496 55.425 49.492 1 31.81 ? N7A NAD 501 B 1 HETATM 16 C C5A NAD . . . F 2 54.695 55.932 48.527 1 31.84 ? C5A NAD 501 B 1 HETATM 17 C C6A NAD . . . F 2 53.535 55.456 47.92 1 33.08 ? C6A NAD 501 B 1 HETATM 18 N N6A NAD . . . F 2 53.012 54.247 48.214 1 29.29 ? N6A NAD 501 B 1 HETATM 19 N N1A NAD . . . F 2 52.955 56.239 46.935 1 35.05 ? N1A NAD 501 B 1 HETATM 20 C C2A NAD . . . F 2 53.514 57.446 46.563 1 31.98 ? C2A NAD 501 B 1 HETATM 21 N N3A NAD . . . F 2 54.671 57.902 47.176 1 31.61 ? N3A NAD 501 B 1 HETATM 22 C C4A NAD . . . F 2 55.247 57.153 48.136 1 32.54 ? C4A NAD 501 B 1 HETATM 23 O O3 NAD . . . F 2 63.808 57.96 50.445 1 37.51 ? O3 NAD 501 B 1 HETATM 24 P PN NAD . . . F 2 64.946 58.23 49.368 1 39.01 ? PN NAD 501 B 1 HETATM 25 O O1N NAD . . . F 2 64.644 59.444 48.581 1 38.75 ? O1N NAD 501 B 1 HETATM 26 O O2N NAD . . . F 2 66.241 58.025 50.064 1 38.86 ? O2N NAD 501 B 1 HETATM 27 O O5D NAD . . . F 2 64.73 56.939 48.433 1 45.67 ? O5D NAD 501 B 1 HETATM 28 C C5D NAD . . . F 2 64.385 57.028 47.073 1 42.33 ? C5D NAD 501 B 1 HETATM 29 C C4D NAD . . . F 2 64.543 55.631 46.477 1 41.54 ? C4D NAD 501 B 1 HETATM 30 O O4D NAD . . . F 2 65.902 55.241 46.455 1 40.14 ? O4D NAD 501 B 1 HETATM 31 C C3D NAD . . . F 2 63.796 54.603 47.316 1 41.44 ? C3D NAD 501 B 1 HETATM 32 O O3D NAD . . . F 2 63.103 53.744 46.432 1 42.22 ? O3D NAD 501 B 1 HETATM 33 C C2D NAD . . . F 2 64.903 53.853 48.026 1 39.9 ? C2D NAD 501 B 1 HETATM 34 O O2D NAD . . . F 2 64.555 52.508 48.257 1 39.5 ? O2D NAD 501 B 1 HETATM 35 C C1D NAD . . . F 2 66.082 53.987 47.07 1 39.22 ? C1D NAD 501 B 1 HETATM 36 N N1N NAD . . . F 2 67.363 53.89 47.802 1 38.91 ? N1N NAD 501 B 1 HETATM 37 C C2N NAD . . . F 2 67.942 54.987 48.418 1 36.48 ? C2N NAD 501 B 1 HETATM 38 C C3N NAD . . . F 2 69.159 54.849 49.121 1 33.72 ? C3N NAD 501 B 1 HETATM 39 C C7N NAD . . . F 2 69.604 55.883 50.111 1 31.76 ? C7N NAD 501 B 1 HETATM 40 O O7N NAD . . . F 2 70.803 55.673 50.804 1 37.16 ? O7N NAD 501 B 1 HETATM 41 N N7N NAD . . . F 2 68.879 56.976 50.33 1 30.09 ? N7N NAD 501 B 1 HETATM 42 C C4N NAD . . . F 2 69.769 53.596 49.203 1 35.23 ? C4N NAD 501 B 1 HETATM 43 C C5N NAD . . . F 2 69.171 52.487 48.59 1 36.57 ? C5N NAD 501 B 1 HETATM 44 C C6N NAD . . . F 2 67.967 52.649 47.892 1 38.77 ? C6N NAD 501 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #