data_4GLW # _model_server_result.job_id kwDfnEtkJTC5sgPiFrzC4Q _model_server_result.datetime_utc '2024-12-21 12:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4glw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4GLW # _exptl.entry_id 4GLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.227 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GLW _cell.length_a 56.73 _cell.length_b 56.73 _cell.length_c 197.93 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N2 O8 P 1' _chem_comp.formula_weight 335.227 _chem_comp.id NMN _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NICOTINAMIDE MONONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NMN doub 263 n n P O1P NMN sing 264 n n P O2P NMN sing 265 n n P O5R NMN sing 266 n n O1P H1PO NMN sing 267 n n O2P H2PO NMN sing 268 n n O5R C5R NMN sing 269 n n C5R C4R NMN sing 270 n n C5R H5R1 NMN sing 271 n n C5R H5R2 NMN sing 272 n n C4R O4R NMN sing 273 n n C4R C3R NMN sing 274 n n C4R H4RC NMN sing 275 n n O4R C1R NMN sing 276 n n C3R O3R NMN sing 277 n n C3R C2R NMN sing 278 n n C3R H3RC NMN sing 279 n n O3R H3RO NMN sing 280 n n C2R O2R NMN sing 281 n n C2R C1R NMN sing 282 n n C2R H2RC NMN sing 283 n n O2R H2RO NMN sing 284 n n C1R N1 NMN sing 285 n n C1R H1RC NMN sing 286 n n N1 C2 NMN doub 287 n y N1 C6 NMN sing 288 n y C2 C3 NMN sing 289 n y C2 HC2 NMN sing 290 n n C3 C7 NMN sing 291 n n C3 C4 NMN doub 292 n y C7 O7 NMN doub 293 n n C7 N7 NMN sing 294 n n N7 HN71 NMN sing 295 n n N7 HN72 NMN sing 296 n n C4 C5 NMN sing 297 n y C4 HC4 NMN sing 298 n n C5 C6 NMN doub 299 n y C5 HC5 NMN sing 300 n n C6 HC6 NMN sing 301 n n # _atom_sites.entry_id 4GLW _atom_sites.fract_transf_matrix[1][1] 0.017627 _atom_sites.fract_transf_matrix[1][2] 0.010177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 1 SO4 SO4 . D 3 0XT A 1 402 1 0XT XXX . E 2 SO4 B 1 401 2 SO4 SO4 . F 3 0XT B 1 402 1 0XT XXX . G 4 NMN B 1 403 1 NMN NMN . H 5 HOH A 1 501 3 HOH HOH . H 5 HOH A 2 502 4 HOH HOH . H 5 HOH A 3 503 5 HOH HOH . H 5 HOH A 4 504 7 HOH HOH . H 5 HOH A 5 505 9 HOH HOH . H 5 HOH A 6 506 18 HOH HOH . H 5 HOH A 7 507 25 HOH HOH . H 5 HOH A 8 508 28 HOH HOH . H 5 HOH A 9 509 30 HOH HOH . H 5 HOH A 10 510 33 HOH HOH . H 5 HOH A 11 511 34 HOH HOH . H 5 HOH A 12 512 35 HOH HOH . H 5 HOH A 13 513 36 HOH HOH . H 5 HOH A 14 514 37 HOH HOH . H 5 HOH A 15 515 40 HOH HOH . H 5 HOH A 16 516 41 HOH HOH . H 5 HOH A 17 517 42 HOH HOH . H 5 HOH A 18 518 48 HOH HOH . H 5 HOH A 19 519 51 HOH HOH . H 5 HOH A 20 520 53 HOH HOH . H 5 HOH A 21 521 62 HOH HOH . H 5 HOH A 22 522 63 HOH HOH . H 5 HOH A 23 523 74 HOH HOH . H 5 HOH A 24 524 78 HOH HOH . H 5 HOH A 25 525 82 HOH HOH . H 5 HOH A 26 526 83 HOH HOH . H 5 HOH A 27 527 86 HOH HOH . H 5 HOH A 28 528 94 HOH HOH . H 5 HOH A 29 529 101 HOH HOH . H 5 HOH A 30 530 104 HOH HOH . H 5 HOH A 31 531 109 HOH HOH . H 5 HOH A 32 532 111 HOH HOH . H 5 HOH A 33 533 114 HOH HOH . H 5 HOH A 34 534 119 HOH HOH . H 5 HOH A 35 535 127 HOH HOH . H 5 HOH A 36 536 132 HOH HOH . H 5 HOH A 37 537 133 HOH HOH . H 5 HOH A 38 538 139 HOH HOH . H 5 HOH A 39 539 147 HOH HOH . H 5 HOH A 40 540 149 HOH HOH . H 5 HOH A 41 541 158 HOH HOH . H 5 HOH A 42 542 164 HOH HOH . H 5 HOH A 43 543 177 HOH HOH . H 5 HOH A 44 544 182 HOH HOH . H 5 HOH A 45 545 184 HOH HOH . H 5 HOH A 46 546 197 HOH HOH . H 5 HOH A 47 547 210 HOH HOH . H 5 HOH A 48 548 215 HOH HOH . H 5 HOH A 49 549 230 HOH HOH . H 5 HOH A 50 550 244 HOH HOH . I 5 HOH B 1 501 1 HOH HOH . I 5 HOH B 2 502 2 HOH HOH . I 5 HOH B 3 503 11 HOH HOH . I 5 HOH B 4 504 12 HOH HOH . I 5 HOH B 5 505 14 HOH HOH . I 5 HOH B 6 506 15 HOH HOH . I 5 HOH B 7 507 16 HOH HOH . I 5 HOH B 8 508 17 HOH HOH . I 5 HOH B 9 509 20 HOH HOH . I 5 HOH B 10 510 21 HOH HOH . I 5 HOH B 11 511 22 HOH HOH . I 5 HOH B 12 512 31 HOH HOH . I 5 HOH B 13 513 38 HOH HOH . I 5 HOH B 14 514 44 HOH HOH . I 5 HOH B 15 515 47 HOH HOH . I 5 HOH B 16 516 52 HOH HOH . I 5 HOH B 17 517 54 HOH HOH . I 5 HOH B 18 518 55 HOH HOH . I 5 HOH B 19 519 57 HOH HOH . I 5 HOH B 20 520 58 HOH HOH . I 5 HOH B 21 521 59 HOH HOH . I 5 HOH B 22 522 60 HOH HOH . I 5 HOH B 23 523 61 HOH HOH . I 5 HOH B 24 524 67 HOH HOH . I 5 HOH B 25 525 73 HOH HOH . I 5 HOH B 26 526 75 HOH HOH . I 5 HOH B 27 527 84 HOH HOH . I 5 HOH B 28 528 92 HOH HOH . I 5 HOH B 29 529 96 HOH HOH . I 5 HOH B 30 530 99 HOH HOH . I 5 HOH B 31 531 100 HOH HOH . I 5 HOH B 32 532 108 HOH HOH . I 5 HOH B 33 533 110 HOH HOH . I 5 HOH B 34 534 113 HOH HOH . I 5 HOH B 35 535 118 HOH HOH . I 5 HOH B 36 536 121 HOH HOH . I 5 HOH B 37 537 128 HOH HOH . I 5 HOH B 38 538 138 HOH HOH . I 5 HOH B 39 539 153 HOH HOH . I 5 HOH B 40 540 154 HOH HOH . I 5 HOH B 41 541 159 HOH HOH . I 5 HOH B 42 542 163 HOH HOH . I 5 HOH B 43 543 166 HOH HOH . I 5 HOH B 44 544 169 HOH HOH . I 5 HOH B 45 545 170 HOH HOH . I 5 HOH B 46 546 188 HOH HOH . I 5 HOH B 47 547 192 HOH HOH . I 5 HOH B 48 548 203 HOH HOH . I 5 HOH B 49 549 208 HOH HOH . I 5 HOH B 50 550 211 HOH HOH . I 5 HOH B 51 551 214 HOH HOH . I 5 HOH B 52 552 216 HOH HOH . I 5 HOH B 53 553 220 HOH HOH . I 5 HOH B 54 554 224 HOH HOH . I 5 HOH B 55 555 238 HOH HOH . I 5 HOH B 56 556 240 HOH HOH . I 5 HOH B 57 557 243 HOH HOH . I 5 HOH B 58 558 245 HOH HOH . I 5 HOH B 59 559 246 HOH HOH . I 5 HOH B 60 560 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NMN . . . G 4 -28.021 4.606 1.505 1 123.65 ? O3P NMN 403 B 1 HETATM 2 P P NMN . . . G 4 -27.711 6.094 1.546 1 134.4 ? P NMN 403 B 1 HETATM 3 O O1P NMN . . . G 4 -28.653 6.87 2.426 1 129.14 ? O1P NMN 403 B 1 HETATM 4 O O2P NMN . . . G 4 -26.264 6.45 1.822 1 125.63 ? O2P NMN 403 B 1 HETATM 5 O O5R NMN . . . G 4 -28.012 6.665 0.05 1 118.65 ? O5R NMN 403 B 1 HETATM 6 C C5R NMN . . . G 4 -28.797 5.953 -0.917 1 104.79 ? C5R NMN 403 B 1 HETATM 7 C C4R NMN . . . G 4 -27.923 5.265 -1.974 1 96.59 ? C4R NMN 403 B 1 HETATM 8 O O4R NMN . . . G 4 -27.028 4.25 -1.452 1 91.34 ? O4R NMN 403 B 1 HETATM 9 C C3R NMN . . . G 4 -28.796 4.523 -2.968 1 97.49 ? C3R NMN 403 B 1 HETATM 10 O O3R NMN . . . G 4 -29.185 5.369 -4.06 1 99.23 ? O3R NMN 403 B 1 HETATM 11 C C2R NMN . . . G 4 -27.97 3.287 -3.358 1 92.13 ? C2R NMN 403 B 1 HETATM 12 O O2R NMN . . . G 4 -27.183 3.494 -4.534 1 87.3 ? O2R NMN 403 B 1 HETATM 13 C C1R NMN . . . G 4 -27.062 3.002 -2.17 1 78.31 ? C1R NMN 403 B 1 HETATM 14 N N1 NMN . . . G 4 -27.737 1.974 -1.371 1 66.99 ? N1 NMN 403 B 1 HETATM 15 C C2 NMN . . . G 4 -29.013 2.223 -1.105 1 72.8 ? C2 NMN 403 B 1 HETATM 16 C C3 NMN . . . G 4 -29.831 1.393 -0.383 1 72.71 ? C3 NMN 403 B 1 HETATM 17 C C7 NMN . . . G 4 -31.195 1.948 -0.248 1 74.03 ? C7 NMN 403 B 1 HETATM 18 O O7 NMN . . . G 4 -31.333 2.855 0.537 1 72.12 ? O7 NMN 403 B 1 HETATM 19 N N7 NMN . . . G 4 -32.169 1.517 -1.042 1 82.53 ? N7 NMN 403 B 1 HETATM 20 C C4 NMN . . . G 4 -29.34 0.206 0.126 1 64.79 ? C4 NMN 403 B 1 HETATM 21 C C5 NMN . . . G 4 -27.989 -0.046 -0.155 1 64.83 ? C5 NMN 403 B 1 HETATM 22 C C6 NMN . . . G 4 -27.196 0.841 -0.916 1 65.66 ? C6 NMN 403 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 22 #