data_4GMK # _model_server_result.job_id qr0ysilFmc1Mth53TvDvng _model_server_result.datetime_utc '2024-11-05 00:34:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4GMK # _exptl.entry_id 4GMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 'Ribose 5-Phosphate Isomerase' _entity.pdbx_ec 5.3.1.6 # _cell.angle_alpha 90 _cell.angle_beta 107.68 _cell.angle_gamma 90 _cell.entry_id 4GMK _cell.length_a 129.34 _cell.length_b 63.8 _cell.length_c 59.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 196 A ILE 195 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc2 A O GLN 198 A GLN 197 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc3 A O VAL 201 A VAL 200 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc4 E K K . A K 303 1_555 I O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc5 E K K . A K 303 1_555 I O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc6 E K K . A K 303 1_555 I O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc7 H O HOH . A HOH 407 1_555 G K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc8 H O HOH . A HOH 408 1_555 G K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc9 B O ILE 196 B ILE 195 1_555 G K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc10 B O GLN 198 B GLN 197 1_555 G K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc11 B O VAL 201 B VAL 200 1_555 G K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc12 G K K . B K 302 1_555 I O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 4GMK _atom_sites.fract_transf_matrix[1][1] 0.007732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 301 PO4 PO4 . D 2 PO4 A 1 302 302 PO4 PO4 . E 3 K A 1 303 303 K K . F 2 PO4 B 1 301 301 PO4 PO4 . G 3 K B 1 302 302 K K . H 4 HOH A 1 401 401 HOH HOH . H 4 HOH A 2 402 402 HOH HOH . H 4 HOH A 3 403 403 HOH HOH . H 4 HOH A 4 404 404 HOH HOH . H 4 HOH A 5 405 405 HOH HOH . H 4 HOH A 6 406 406 HOH HOH . H 4 HOH A 7 407 407 HOH HOH . H 4 HOH A 8 408 408 HOH HOH . H 4 HOH A 9 409 409 HOH HOH . H 4 HOH A 10 410 410 HOH HOH . H 4 HOH A 11 411 411 HOH HOH . H 4 HOH A 12 412 412 HOH HOH . H 4 HOH A 13 413 413 HOH HOH . H 4 HOH A 14 414 414 HOH HOH . H 4 HOH A 15 415 415 HOH HOH . H 4 HOH A 16 416 416 HOH HOH . H 4 HOH A 17 417 417 HOH HOH . H 4 HOH A 18 418 418 HOH HOH . H 4 HOH A 19 419 419 HOH HOH . H 4 HOH A 20 420 420 HOH HOH . H 4 HOH A 21 421 421 HOH HOH . H 4 HOH A 22 422 422 HOH HOH . H 4 HOH A 23 423 423 HOH HOH . H 4 HOH A 24 424 424 HOH HOH . H 4 HOH A 25 425 425 HOH HOH . H 4 HOH A 26 426 426 HOH HOH . H 4 HOH A 27 427 427 HOH HOH . H 4 HOH A 28 428 428 HOH HOH . H 4 HOH A 29 429 429 HOH HOH . H 4 HOH A 30 430 430 HOH HOH . H 4 HOH A 31 431 431 HOH HOH . H 4 HOH A 32 432 432 HOH HOH . H 4 HOH A 33 433 433 HOH HOH . H 4 HOH A 34 434 434 HOH HOH . H 4 HOH A 35 435 435 HOH HOH . H 4 HOH A 36 436 436 HOH HOH . H 4 HOH A 37 437 437 HOH HOH . H 4 HOH A 38 438 438 HOH HOH . H 4 HOH A 39 439 439 HOH HOH . H 4 HOH A 40 440 440 HOH HOH . H 4 HOH A 41 441 441 HOH HOH . H 4 HOH A 42 442 442 HOH HOH . H 4 HOH A 43 443 443 HOH HOH . H 4 HOH A 44 444 444 HOH HOH . H 4 HOH A 45 445 445 HOH HOH . H 4 HOH A 46 446 446 HOH HOH . H 4 HOH A 47 447 447 HOH HOH . H 4 HOH A 48 448 448 HOH HOH . H 4 HOH A 49 449 449 HOH HOH . H 4 HOH A 50 450 450 HOH HOH . H 4 HOH A 51 451 451 HOH HOH . H 4 HOH A 52 452 452 HOH HOH . H 4 HOH A 53 453 453 HOH HOH . H 4 HOH A 54 454 454 HOH HOH . H 4 HOH A 55 455 455 HOH HOH . H 4 HOH A 56 456 456 HOH HOH . H 4 HOH A 57 457 457 HOH HOH . H 4 HOH A 58 458 458 HOH HOH . H 4 HOH A 59 459 459 HOH HOH . H 4 HOH A 60 460 460 HOH HOH . H 4 HOH A 61 461 461 HOH HOH . H 4 HOH A 62 462 462 HOH HOH . H 4 HOH A 63 463 463 HOH HOH . H 4 HOH A 64 464 464 HOH HOH . H 4 HOH A 65 465 465 HOH HOH . H 4 HOH A 66 466 466 HOH HOH . H 4 HOH A 67 467 467 HOH HOH . H 4 HOH A 68 468 468 HOH HOH . H 4 HOH A 69 469 469 HOH HOH . H 4 HOH A 70 470 470 HOH HOH . H 4 HOH A 71 471 471 HOH HOH . H 4 HOH A 72 472 472 HOH HOH . H 4 HOH A 73 473 473 HOH HOH . H 4 HOH A 74 474 474 HOH HOH . H 4 HOH A 75 475 475 HOH HOH . H 4 HOH A 76 476 476 HOH HOH . H 4 HOH A 77 477 477 HOH HOH . H 4 HOH A 78 478 478 HOH HOH . H 4 HOH A 79 479 479 HOH HOH . H 4 HOH A 80 480 480 HOH HOH . H 4 HOH A 81 481 481 HOH HOH . H 4 HOH A 82 482 482 HOH HOH . H 4 HOH A 83 483 483 HOH HOH . H 4 HOH A 84 484 484 HOH HOH . H 4 HOH A 85 485 485 HOH HOH . H 4 HOH A 86 486 486 HOH HOH . H 4 HOH A 87 487 487 HOH HOH . H 4 HOH A 88 488 488 HOH HOH . H 4 HOH A 89 489 489 HOH HOH . H 4 HOH A 90 490 490 HOH HOH . H 4 HOH A 91 491 491 HOH HOH . H 4 HOH A 92 492 492 HOH HOH . H 4 HOH A 93 493 493 HOH HOH . H 4 HOH A 94 494 494 HOH HOH . H 4 HOH A 95 495 495 HOH HOH . H 4 HOH A 96 496 496 HOH HOH . H 4 HOH A 97 497 497 HOH HOH . H 4 HOH A 98 498 498 HOH HOH . H 4 HOH A 99 499 499 HOH HOH . H 4 HOH A 100 500 500 HOH HOH . H 4 HOH A 101 501 501 HOH HOH . H 4 HOH A 102 502 502 HOH HOH . H 4 HOH A 103 503 503 HOH HOH . H 4 HOH A 104 504 504 HOH HOH . H 4 HOH A 105 505 505 HOH HOH . H 4 HOH A 106 506 506 HOH HOH . H 4 HOH A 107 507 509 HOH HOH . H 4 HOH A 108 508 511 HOH HOH . H 4 HOH A 109 509 512 HOH HOH . H 4 HOH A 110 510 516 HOH HOH . H 4 HOH A 111 511 518 HOH HOH . H 4 HOH A 112 512 519 HOH HOH . H 4 HOH A 113 513 520 HOH HOH . H 4 HOH A 114 514 521 HOH HOH . H 4 HOH A 115 515 522 HOH HOH . H 4 HOH A 116 516 524 HOH HOH . H 4 HOH A 117 517 525 HOH HOH . H 4 HOH A 118 518 526 HOH HOH . H 4 HOH A 119 519 527 HOH HOH . H 4 HOH A 120 520 528 HOH HOH . I 4 HOH B 1 401 401 HOH HOH . I 4 HOH B 2 402 402 HOH HOH . I 4 HOH B 3 403 403 HOH HOH . I 4 HOH B 4 404 404 HOH HOH . I 4 HOH B 5 405 405 HOH HOH . I 4 HOH B 6 406 406 HOH HOH . I 4 HOH B 7 407 407 HOH HOH . I 4 HOH B 8 408 408 HOH HOH . I 4 HOH B 9 409 409 HOH HOH . I 4 HOH B 10 410 410 HOH HOH . I 4 HOH B 11 411 411 HOH HOH . I 4 HOH B 12 412 412 HOH HOH . I 4 HOH B 13 413 413 HOH HOH . I 4 HOH B 14 414 414 HOH HOH . I 4 HOH B 15 415 415 HOH HOH . I 4 HOH B 16 416 416 HOH HOH . I 4 HOH B 17 417 417 HOH HOH . I 4 HOH B 18 418 418 HOH HOH . I 4 HOH B 19 419 419 HOH HOH . I 4 HOH B 20 420 420 HOH HOH . I 4 HOH B 21 421 421 HOH HOH . I 4 HOH B 22 422 422 HOH HOH . I 4 HOH B 23 423 423 HOH HOH . I 4 HOH B 24 424 424 HOH HOH . I 4 HOH B 25 425 425 HOH HOH . I 4 HOH B 26 426 426 HOH HOH . I 4 HOH B 27 427 427 HOH HOH . I 4 HOH B 28 428 428 HOH HOH . I 4 HOH B 29 429 429 HOH HOH . I 4 HOH B 30 430 430 HOH HOH . I 4 HOH B 31 431 431 HOH HOH . I 4 HOH B 32 432 432 HOH HOH . I 4 HOH B 33 433 433 HOH HOH . I 4 HOH B 34 434 434 HOH HOH . I 4 HOH B 35 435 435 HOH HOH . I 4 HOH B 36 436 436 HOH HOH . I 4 HOH B 37 437 437 HOH HOH . I 4 HOH B 38 438 438 HOH HOH . I 4 HOH B 39 439 439 HOH HOH . I 4 HOH B 40 440 440 HOH HOH . I 4 HOH B 41 441 441 HOH HOH . I 4 HOH B 42 442 442 HOH HOH . I 4 HOH B 43 443 443 HOH HOH . I 4 HOH B 44 444 444 HOH HOH . I 4 HOH B 45 445 445 HOH HOH . I 4 HOH B 46 446 446 HOH HOH . I 4 HOH B 47 447 447 HOH HOH . I 4 HOH B 48 448 448 HOH HOH . I 4 HOH B 49 449 449 HOH HOH . I 4 HOH B 50 450 450 HOH HOH . I 4 HOH B 51 451 451 HOH HOH . I 4 HOH B 52 452 452 HOH HOH . I 4 HOH B 53 453 453 HOH HOH . I 4 HOH B 54 454 454 HOH HOH . I 4 HOH B 55 455 455 HOH HOH . I 4 HOH B 56 456 456 HOH HOH . I 4 HOH B 57 457 457 HOH HOH . I 4 HOH B 58 458 458 HOH HOH . I 4 HOH B 59 459 459 HOH HOH . I 4 HOH B 60 460 460 HOH HOH . I 4 HOH B 61 461 461 HOH HOH . I 4 HOH B 62 462 462 HOH HOH . I 4 HOH B 63 463 463 HOH HOH . I 4 HOH B 64 464 464 HOH HOH . I 4 HOH B 65 465 465 HOH HOH . I 4 HOH B 66 466 466 HOH HOH . I 4 HOH B 67 467 467 HOH HOH . I 4 HOH B 68 468 468 HOH HOH . I 4 HOH B 69 469 469 HOH HOH . I 4 HOH B 70 470 470 HOH HOH . I 4 HOH B 71 471 471 HOH HOH . I 4 HOH B 72 472 472 HOH HOH . I 4 HOH B 73 473 473 HOH HOH . I 4 HOH B 74 474 474 HOH HOH . I 4 HOH B 75 475 475 HOH HOH . I 4 HOH B 76 476 476 HOH HOH . I 4 HOH B 77 477 477 HOH HOH . I 4 HOH B 78 478 478 HOH HOH . I 4 HOH B 79 479 479 HOH HOH . I 4 HOH B 80 480 480 HOH HOH . I 4 HOH B 81 481 481 HOH HOH . I 4 HOH B 82 482 482 HOH HOH . I 4 HOH B 83 483 483 HOH HOH . I 4 HOH B 84 484 484 HOH HOH . I 4 HOH B 85 485 485 HOH HOH . I 4 HOH B 86 486 486 HOH HOH . I 4 HOH B 87 487 487 HOH HOH . I 4 HOH B 88 488 488 HOH HOH . I 4 HOH B 89 489 489 HOH HOH . I 4 HOH B 90 490 490 HOH HOH . I 4 HOH B 91 491 491 HOH HOH . I 4 HOH B 92 492 492 HOH HOH . I 4 HOH B 93 493 493 HOH HOH . I 4 HOH B 94 494 494 HOH HOH . I 4 HOH B 95 495 495 HOH HOH . I 4 HOH B 96 496 496 HOH HOH . I 4 HOH B 97 497 497 HOH HOH . I 4 HOH B 98 498 498 HOH HOH . I 4 HOH B 99 499 499 HOH HOH . I 4 HOH B 100 500 500 HOH HOH . I 4 HOH B 101 501 501 HOH HOH . I 4 HOH B 102 502 502 HOH HOH . I 4 HOH B 103 503 503 HOH HOH . I 4 HOH B 104 504 504 HOH HOH . I 4 HOH B 105 505 505 HOH HOH . I 4 HOH B 106 506 506 HOH HOH . I 4 HOH B 107 507 507 HOH HOH . I 4 HOH B 108 508 508 HOH HOH . I 4 HOH B 109 509 509 HOH HOH . I 4 HOH B 110 510 510 HOH HOH . I 4 HOH B 111 511 511 HOH HOH . I 4 HOH B 112 512 512 HOH HOH . I 4 HOH B 113 513 513 HOH HOH . I 4 HOH B 114 514 514 HOH HOH . I 4 HOH B 115 515 515 HOH HOH . I 4 HOH B 116 516 516 HOH HOH . I 4 HOH B 117 517 517 HOH HOH . I 4 HOH B 118 518 518 HOH HOH . I 4 HOH B 119 519 519 HOH HOH . I 4 HOH B 120 520 521 HOH HOH . I 4 HOH B 121 521 522 HOH HOH . I 4 HOH B 122 522 523 HOH HOH . I 4 HOH B 123 523 524 HOH HOH . I 4 HOH B 124 524 525 HOH HOH . I 4 HOH B 125 525 526 HOH HOH . I 4 HOH B 126 526 527 HOH HOH . I 4 HOH B 127 527 528 HOH HOH . I 4 HOH B 128 528 529 HOH HOH . I 4 HOH B 129 529 530 HOH HOH . I 4 HOH B 130 530 531 HOH HOH . I 4 HOH B 131 531 532 HOH HOH . I 4 HOH B 132 532 533 HOH HOH . I 4 HOH B 133 533 536 HOH HOH . I 4 HOH B 134 534 537 HOH HOH . I 4 HOH B 135 535 539 HOH HOH . I 4 HOH B 136 536 540 HOH HOH . I 4 HOH B 137 537 541 HOH HOH . I 4 HOH B 138 538 542 HOH HOH . I 4 HOH B 139 539 543 HOH HOH . I 4 HOH B 140 540 544 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 46.45 15.993 15.238 1 21.11 ? P PO4 302 A 1 HETATM 2 O O1 PO4 . . . D 2 46.654 16.213 13.741 1 27.36 ? O1 PO4 302 A 1 HETATM 3 O O2 PO4 . . . D 2 45.295 16.834 15.759 1 23.16 ? O2 PO4 302 A 1 HETATM 4 O O3 PO4 . . . D 2 46.383 14.527 15.471 1 21.05 ? O3 PO4 302 A 1 HETATM 5 O O4 PO4 . . . D 2 47.763 16.57 15.726 1 23.75 ? O4 PO4 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #