data_4GMT # _model_server_result.job_id 1JxJkSJtPfAIwwLF3IKShQ _model_server_result.datetime_utc '2024-12-03 14:53:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4GMT # _exptl.entry_id 4GMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GMT _cell.length_a 106.84 _cell.length_b 106.84 _cell.length_c 185.52 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 A 1 NAG H 301 NAG 3 n E NAG 2 A 2 NAG H 302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 145 H CYS 140 1_555 B SG CYS 200 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 C SG CYS 23 M CYS 23 1_555 C SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 C SG CYS 134 M CYS 134 1_555 C SG CYS 194 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 D SG CYS 22 I CYS 22 1_555 D SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 D SG CYS 145 I CYS 140 1_555 D SG CYS 200 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B ND2 ASN 73 H ASN 72 1_555 E C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 D C PCA 1 I PCA 1 1_555 D N VAL 2 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 D ND2 ASN 73 I ASN 72 1_555 G C1 NAG . I NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 E O4 NAG . A NAG 1 1_555 E C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 336 n n S O2 SO4 doub 337 n n S O3 SO4 sing 338 n n S O4 SO4 sing 339 n n # _atom_sites.entry_id 4GMT _atom_sites.fract_transf_matrix[1][1] 0.00936 _atom_sites.fract_transf_matrix[1][2] 0.005404 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 SO4 H 1 303 1 SO4 SO4 . G 5 NAG I 1 301 301 NAG NAG . H 4 SO4 I 1 302 2 SO4 SO4 . I 6 HOH L 1 301 1 HOH HOH . I 6 HOH L 2 302 2 HOH HOH . I 6 HOH L 3 303 5 HOH HOH . I 6 HOH L 4 304 9 HOH HOH . I 6 HOH L 5 305 10 HOH HOH . I 6 HOH L 6 306 11 HOH HOH . I 6 HOH L 7 307 12 HOH HOH . I 6 HOH L 8 308 13 HOH HOH . I 6 HOH L 9 309 14 HOH HOH . I 6 HOH L 10 310 16 HOH HOH . I 6 HOH L 11 311 17 HOH HOH . J 6 HOH H 1 401 6 HOH HOH . J 6 HOH H 2 402 7 HOH HOH . J 6 HOH H 3 403 8 HOH HOH . J 6 HOH H 4 404 19 HOH HOH . J 6 HOH H 5 405 20 HOH HOH . J 6 HOH H 6 406 21 HOH HOH . J 6 HOH H 7 407 49 HOH HOH . J 6 HOH H 8 408 54 HOH HOH . K 6 HOH M 1 301 22 HOH HOH . K 6 HOH M 2 302 23 HOH HOH . K 6 HOH M 3 303 24 HOH HOH . K 6 HOH M 4 304 25 HOH HOH . K 6 HOH M 5 305 26 HOH HOH . K 6 HOH M 6 306 27 HOH HOH . K 6 HOH M 7 307 28 HOH HOH . K 6 HOH M 8 308 30 HOH HOH . K 6 HOH M 9 309 31 HOH HOH . K 6 HOH M 10 310 32 HOH HOH . K 6 HOH M 11 311 33 HOH HOH . K 6 HOH M 12 312 34 HOH HOH . K 6 HOH M 13 313 37 HOH HOH . K 6 HOH M 14 314 41 HOH HOH . K 6 HOH M 15 315 47 HOH HOH . L 6 HOH I 1 401 38 HOH HOH . L 6 HOH I 2 402 39 HOH HOH . L 6 HOH I 3 403 40 HOH HOH . L 6 HOH I 4 404 42 HOH HOH . L 6 HOH I 5 405 43 HOH HOH . L 6 HOH I 6 406 44 HOH HOH . L 6 HOH I 7 407 45 HOH HOH . L 6 HOH I 8 408 51 HOH HOH . L 6 HOH I 9 409 52 HOH HOH . L 6 HOH I 10 410 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 4 -19.711 -24.023 23.612 1 87.4 ? S SO4 303 H 1 HETATM 2 O O1 SO4 . . . F 4 -18.415 -23.971 22.925 1 85.37 ? O1 SO4 303 H 1 HETATM 3 O O2 SO4 . . . F 4 -20.701 -24.67 22.758 1 86.92 ? O2 SO4 303 H 1 HETATM 4 O O3 SO4 . . . F 4 -19.598 -24.839 24.819 1 91.36 ? O3 SO4 303 H 1 HETATM 5 O O4 SO4 . . . F 4 -20.16 -22.671 23.966 1 77.86 ? O4 SO4 303 H 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #