data_4GN1
#
_model_server_result.job_id            mEIigbzJYBO4zd1vFIMu1A 
_model_server_result.datetime_utc      '2025-05-22 06:47:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gn1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    4GN1 
#
_exptl.entry_id    4GN1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.91 
_cell.angle_gamma         90 
_cell.entry_id            4GN1 
_cell.length_a            75.34 
_cell.length_b            93.465 
_cell.length_c            80.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GN1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     4GN1 
_atom_sites.fract_transf_matrix[1][1]    0.013273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003534 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010699 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MLI A 1 601 3 MLI MLI . 
F 2 MLI B 1 601 2 MLI MLI . 
G 2 MLI C 1 601 4 MLI MLI . 
H 2 MLI D 1 601 1 MLI MLI . 
I 3 HOH A 1 701 2 HOH HOH . 
I 3 HOH A 2 702 5 HOH HOH . 
I 3 HOH A 3 703 20 HOH HOH . 
I 3 HOH A 4 704 27 HOH HOH . 
I 3 HOH A 5 705 29 HOH HOH . 
I 3 HOH A 6 706 33 HOH HOH . 
I 3 HOH A 7 707 34 HOH HOH . 
I 3 HOH A 8 708 38 HOH HOH . 
I 3 HOH A 9 709 45 HOH HOH . 
I 3 HOH A 10 710 51 HOH HOH . 
I 3 HOH A 11 711 63 HOH HOH . 
I 3 HOH A 12 712 69 HOH HOH . 
I 3 HOH A 13 713 70 HOH HOH . 
I 3 HOH A 14 714 71 HOH HOH . 
I 3 HOH A 15 715 74 HOH HOH . 
I 3 HOH A 16 716 76 HOH HOH . 
I 3 HOH A 17 717 82 HOH HOH . 
I 3 HOH A 18 718 83 HOH HOH . 
I 3 HOH A 19 719 87 HOH HOH . 
I 3 HOH A 20 720 88 HOH HOH . 
I 3 HOH A 21 721 95 HOH HOH . 
I 3 HOH A 22 722 100 HOH HOH . 
I 3 HOH A 23 723 103 HOH HOH . 
I 3 HOH A 24 724 106 HOH HOH . 
I 3 HOH A 25 725 112 HOH HOH . 
I 3 HOH A 26 726 114 HOH HOH . 
I 3 HOH A 27 727 115 HOH HOH . 
I 3 HOH A 28 728 119 HOH HOH . 
I 3 HOH A 29 729 130 HOH HOH . 
I 3 HOH A 30 730 134 HOH HOH . 
I 3 HOH A 31 731 141 HOH HOH . 
I 3 HOH A 32 732 143 HOH HOH . 
I 3 HOH A 33 733 144 HOH HOH . 
I 3 HOH A 34 734 145 HOH HOH . 
I 3 HOH A 35 735 154 HOH HOH . 
I 3 HOH A 36 736 155 HOH HOH . 
I 3 HOH A 37 737 156 HOH HOH . 
I 3 HOH A 38 738 158 HOH HOH . 
I 3 HOH A 39 739 159 HOH HOH . 
I 3 HOH A 40 740 165 HOH HOH . 
I 3 HOH A 41 741 169 HOH HOH . 
I 3 HOH A 42 742 180 HOH HOH . 
I 3 HOH A 43 743 187 HOH HOH . 
I 3 HOH A 44 744 188 HOH HOH . 
I 3 HOH A 45 745 192 HOH HOH . 
I 3 HOH A 46 746 194 HOH HOH . 
I 3 HOH A 47 747 196 HOH HOH . 
I 3 HOH A 48 748 197 HOH HOH . 
I 3 HOH A 49 749 198 HOH HOH . 
I 3 HOH A 50 750 204 HOH HOH . 
I 3 HOH A 51 751 205 HOH HOH . 
I 3 HOH A 52 752 208 HOH HOH . 
I 3 HOH A 53 753 212 HOH HOH . 
I 3 HOH A 54 754 215 HOH HOH . 
I 3 HOH A 55 755 220 HOH HOH . 
I 3 HOH A 56 756 222 HOH HOH . 
I 3 HOH A 57 757 228 HOH HOH . 
I 3 HOH A 58 758 234 HOH HOH . 
I 3 HOH A 59 759 235 HOH HOH . 
I 3 HOH A 60 760 243 HOH HOH . 
I 3 HOH A 61 761 245 HOH HOH . 
I 3 HOH A 62 762 247 HOH HOH . 
J 3 HOH B 1 701 6 HOH HOH . 
J 3 HOH B 2 702 10 HOH HOH . 
J 3 HOH B 3 703 12 HOH HOH . 
J 3 HOH B 4 704 23 HOH HOH . 
J 3 HOH B 5 705 26 HOH HOH . 
J 3 HOH B 6 706 28 HOH HOH . 
J 3 HOH B 7 707 30 HOH HOH . 
J 3 HOH B 8 708 31 HOH HOH . 
J 3 HOH B 9 709 41 HOH HOH . 
J 3 HOH B 10 710 43 HOH HOH . 
J 3 HOH B 11 711 48 HOH HOH . 
J 3 HOH B 12 712 49 HOH HOH . 
J 3 HOH B 13 713 55 HOH HOH . 
J 3 HOH B 14 714 64 HOH HOH . 
J 3 HOH B 15 715 65 HOH HOH . 
J 3 HOH B 16 716 67 HOH HOH . 
J 3 HOH B 17 717 72 HOH HOH . 
J 3 HOH B 18 718 92 HOH HOH . 
J 3 HOH B 19 719 94 HOH HOH . 
J 3 HOH B 20 720 101 HOH HOH . 
J 3 HOH B 21 721 104 HOH HOH . 
J 3 HOH B 22 722 105 HOH HOH . 
J 3 HOH B 23 723 107 HOH HOH . 
J 3 HOH B 24 724 109 HOH HOH . 
J 3 HOH B 25 725 116 HOH HOH . 
J 3 HOH B 26 726 121 HOH HOH . 
J 3 HOH B 27 727 122 HOH HOH . 
J 3 HOH B 28 728 123 HOH HOH . 
J 3 HOH B 29 729 125 HOH HOH . 
J 3 HOH B 30 730 127 HOH HOH . 
J 3 HOH B 31 731 139 HOH HOH . 
J 3 HOH B 32 732 142 HOH HOH . 
J 3 HOH B 33 733 148 HOH HOH . 
J 3 HOH B 34 734 150 HOH HOH . 
J 3 HOH B 35 735 153 HOH HOH . 
J 3 HOH B 36 736 160 HOH HOH . 
J 3 HOH B 37 737 161 HOH HOH . 
J 3 HOH B 38 738 168 HOH HOH . 
J 3 HOH B 39 739 170 HOH HOH . 
J 3 HOH B 40 740 171 HOH HOH . 
J 3 HOH B 41 741 177 HOH HOH . 
J 3 HOH B 42 742 178 HOH HOH . 
J 3 HOH B 43 743 179 HOH HOH . 
J 3 HOH B 44 744 181 HOH HOH . 
J 3 HOH B 45 745 185 HOH HOH . 
J 3 HOH B 46 746 186 HOH HOH . 
J 3 HOH B 47 747 190 HOH HOH . 
J 3 HOH B 48 748 200 HOH HOH . 
J 3 HOH B 49 749 201 HOH HOH . 
J 3 HOH B 50 750 206 HOH HOH . 
J 3 HOH B 51 751 210 HOH HOH . 
J 3 HOH B 52 752 211 HOH HOH . 
J 3 HOH B 53 753 218 HOH HOH . 
J 3 HOH B 54 754 223 HOH HOH . 
J 3 HOH B 55 755 231 HOH HOH . 
J 3 HOH B 56 756 232 HOH HOH . 
J 3 HOH B 57 757 242 HOH HOH . 
J 3 HOH B 58 758 244 HOH HOH . 
J 3 HOH B 59 759 248 HOH HOH . 
K 3 HOH C 1 701 3 HOH HOH . 
K 3 HOH C 2 702 4 HOH HOH . 
K 3 HOH C 3 703 7 HOH HOH . 
K 3 HOH C 4 704 8 HOH HOH . 
K 3 HOH C 5 705 11 HOH HOH . 
K 3 HOH C 6 706 13 HOH HOH . 
K 3 HOH C 7 707 16 HOH HOH . 
K 3 HOH C 8 708 17 HOH HOH . 
K 3 HOH C 9 709 18 HOH HOH . 
K 3 HOH C 10 710 19 HOH HOH . 
K 3 HOH C 11 711 21 HOH HOH . 
K 3 HOH C 12 712 22 HOH HOH . 
K 3 HOH C 13 713 24 HOH HOH . 
K 3 HOH C 14 714 37 HOH HOH . 
K 3 HOH C 15 715 40 HOH HOH . 
K 3 HOH C 16 716 42 HOH HOH . 
K 3 HOH C 17 717 44 HOH HOH . 
K 3 HOH C 18 718 50 HOH HOH . 
K 3 HOH C 19 719 52 HOH HOH . 
K 3 HOH C 20 720 53 HOH HOH . 
K 3 HOH C 21 721 56 HOH HOH . 
K 3 HOH C 22 722 58 HOH HOH . 
K 3 HOH C 23 723 59 HOH HOH . 
K 3 HOH C 24 724 60 HOH HOH . 
K 3 HOH C 25 725 61 HOH HOH . 
K 3 HOH C 26 726 62 HOH HOH . 
K 3 HOH C 27 727 73 HOH HOH . 
K 3 HOH C 28 728 75 HOH HOH . 
K 3 HOH C 29 729 77 HOH HOH . 
K 3 HOH C 30 730 79 HOH HOH . 
K 3 HOH C 31 731 80 HOH HOH . 
K 3 HOH C 32 732 84 HOH HOH . 
K 3 HOH C 33 733 85 HOH HOH . 
K 3 HOH C 34 734 93 HOH HOH . 
K 3 HOH C 35 735 96 HOH HOH . 
K 3 HOH C 36 736 98 HOH HOH . 
K 3 HOH C 37 737 102 HOH HOH . 
K 3 HOH C 38 738 108 HOH HOH . 
K 3 HOH C 39 739 110 HOH HOH . 
K 3 HOH C 40 740 111 HOH HOH . 
K 3 HOH C 41 741 126 HOH HOH . 
K 3 HOH C 42 742 128 HOH HOH . 
K 3 HOH C 43 743 131 HOH HOH . 
K 3 HOH C 44 744 136 HOH HOH . 
K 3 HOH C 45 745 147 HOH HOH . 
K 3 HOH C 46 746 157 HOH HOH . 
K 3 HOH C 47 747 163 HOH HOH . 
K 3 HOH C 48 748 166 HOH HOH . 
K 3 HOH C 49 749 172 HOH HOH . 
K 3 HOH C 50 750 175 HOH HOH . 
K 3 HOH C 51 751 182 HOH HOH . 
K 3 HOH C 52 752 189 HOH HOH . 
K 3 HOH C 53 753 195 HOH HOH . 
K 3 HOH C 54 754 209 HOH HOH . 
K 3 HOH C 55 755 213 HOH HOH . 
K 3 HOH C 56 756 216 HOH HOH . 
K 3 HOH C 57 757 217 HOH HOH . 
K 3 HOH C 58 758 219 HOH HOH . 
K 3 HOH C 59 759 221 HOH HOH . 
K 3 HOH C 60 760 225 HOH HOH . 
K 3 HOH C 61 761 226 HOH HOH . 
K 3 HOH C 62 762 227 HOH HOH . 
K 3 HOH C 63 763 230 HOH HOH . 
K 3 HOH C 64 764 236 HOH HOH . 
K 3 HOH C 65 765 237 HOH HOH . 
K 3 HOH C 66 766 239 HOH HOH . 
K 3 HOH C 67 767 241 HOH HOH . 
K 3 HOH C 68 768 249 HOH HOH . 
L 3 HOH D 1 701 1 HOH HOH . 
L 3 HOH D 2 702 9 HOH HOH . 
L 3 HOH D 3 703 14 HOH HOH . 
L 3 HOH D 4 704 15 HOH HOH . 
L 3 HOH D 5 705 25 HOH HOH . 
L 3 HOH D 6 706 32 HOH HOH . 
L 3 HOH D 7 707 35 HOH HOH . 
L 3 HOH D 8 708 36 HOH HOH . 
L 3 HOH D 9 709 39 HOH HOH . 
L 3 HOH D 10 710 46 HOH HOH . 
L 3 HOH D 11 711 47 HOH HOH . 
L 3 HOH D 12 712 54 HOH HOH . 
L 3 HOH D 13 713 57 HOH HOH . 
L 3 HOH D 14 714 66 HOH HOH . 
L 3 HOH D 15 715 68 HOH HOH . 
L 3 HOH D 16 716 78 HOH HOH . 
L 3 HOH D 17 717 81 HOH HOH . 
L 3 HOH D 18 718 86 HOH HOH . 
L 3 HOH D 19 719 89 HOH HOH . 
L 3 HOH D 20 720 90 HOH HOH . 
L 3 HOH D 21 721 91 HOH HOH . 
L 3 HOH D 22 722 97 HOH HOH . 
L 3 HOH D 23 723 99 HOH HOH . 
L 3 HOH D 24 724 113 HOH HOH . 
L 3 HOH D 25 725 117 HOH HOH . 
L 3 HOH D 26 726 118 HOH HOH . 
L 3 HOH D 27 727 120 HOH HOH . 
L 3 HOH D 28 728 124 HOH HOH . 
L 3 HOH D 29 729 129 HOH HOH . 
L 3 HOH D 30 730 132 HOH HOH . 
L 3 HOH D 31 731 133 HOH HOH . 
L 3 HOH D 32 732 135 HOH HOH . 
L 3 HOH D 33 733 137 HOH HOH . 
L 3 HOH D 34 734 138 HOH HOH . 
L 3 HOH D 35 735 140 HOH HOH . 
L 3 HOH D 36 736 146 HOH HOH . 
L 3 HOH D 37 737 149 HOH HOH . 
L 3 HOH D 38 738 151 HOH HOH . 
L 3 HOH D 39 739 152 HOH HOH . 
L 3 HOH D 40 740 162 HOH HOH . 
L 3 HOH D 41 741 164 HOH HOH . 
L 3 HOH D 42 742 167 HOH HOH . 
L 3 HOH D 43 743 173 HOH HOH . 
L 3 HOH D 44 744 174 HOH HOH . 
L 3 HOH D 45 745 176 HOH HOH . 
L 3 HOH D 46 746 183 HOH HOH . 
L 3 HOH D 47 747 184 HOH HOH . 
L 3 HOH D 48 748 191 HOH HOH . 
L 3 HOH D 49 749 193 HOH HOH . 
L 3 HOH D 50 750 199 HOH HOH . 
L 3 HOH D 51 751 202 HOH HOH . 
L 3 HOH D 52 752 203 HOH HOH . 
L 3 HOH D 53 753 207 HOH HOH . 
L 3 HOH D 54 754 214 HOH HOH . 
L 3 HOH D 55 755 224 HOH HOH . 
L 3 HOH D 56 756 229 HOH HOH . 
L 3 HOH D 57 757 233 HOH HOH . 
L 3 HOH D 58 758 238 HOH HOH . 
L 3 HOH D 59 759 240 HOH HOH . 
L 3 HOH D 60 760 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . H 2 58.531 -10.918 -1.443 1 28.82 ? C1 MLI 601 D 1 
HETATM 2 C C2 MLI . . . H 2 59.541 -9.861 -1.857 1 28.66 ? C2 MLI 601 D 1 
HETATM 3 C C3 MLI . . . H 2 57.147 -10.311 -1.325 1 30.22 ? C3 MLI 601 D 1 
HETATM 4 O O6 MLI . . . H 2 59.172 -8.681 -1.989 1 30.06 ? O6 MLI 601 D 1 
HETATM 5 O O7 MLI . . . H 2 60.738 -10.184 -2.05 1 30.55 ? O7 MLI 601 D 1 
HETATM 6 O O8 MLI . . . H 2 56.334 -10.538 -2.234 1 31.29 ? O8 MLI 601 D 1 
HETATM 7 O O9 MLI . . . H 2 56.842 -9.584 -0.354 1 30.39 ? O9 MLI 601 D 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#