data_4GN4 # _model_server_result.job_id 6KfCr1-O9buN7pgP-kXg7A _model_server_result.datetime_utc '2024-12-14 02:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gn4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4GN4 # _exptl.entry_id 4GN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GN4 _cell.length_a 50.43 _cell.length_b 58.33 _cell.length_c 81.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 6 A CYS 6 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 B SG CYS 30 A CYS 30 1_555 B SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 B SG CYS 64 A CYS 64 1_555 B SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 B SG CYS 76 A CYS 76 1_555 B SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4GN4 _atom_sites.fract_transf_matrix[1][1] 0.019829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL B 1 201 1 GOL GOL . D 3 GOL A 1 201 1 GOL GOL . E 3 GOL A 1 202 1 GOL GOL . F 3 GOL A 1 203 1 GOL GOL . G 3 GOL A 1 204 1 GOL GOL . H 4 HOH B 1 301 6 HOH HOH . H 4 HOH B 2 302 7 HOH HOH . H 4 HOH B 3 303 8 HOH HOH . H 4 HOH B 4 304 9 HOH HOH . H 4 HOH B 5 305 12 HOH HOH . H 4 HOH B 6 306 13 HOH HOH . H 4 HOH B 7 307 16 HOH HOH . H 4 HOH B 8 308 19 HOH HOH . H 4 HOH B 9 309 24 HOH HOH . H 4 HOH B 10 310 25 HOH HOH . H 4 HOH B 11 311 26 HOH HOH . H 4 HOH B 12 312 27 HOH HOH . H 4 HOH B 13 313 33 HOH HOH . H 4 HOH B 14 314 41 HOH HOH . H 4 HOH B 15 315 42 HOH HOH . H 4 HOH B 16 316 43 HOH HOH . H 4 HOH B 17 317 44 HOH HOH . H 4 HOH B 18 318 48 HOH HOH . H 4 HOH B 19 319 49 HOH HOH . H 4 HOH B 20 320 50 HOH HOH . H 4 HOH B 21 321 51 HOH HOH . H 4 HOH B 22 322 52 HOH HOH . H 4 HOH B 23 323 56 HOH HOH . H 4 HOH B 24 324 57 HOH HOH . H 4 HOH B 25 325 59 HOH HOH . H 4 HOH B 26 326 61 HOH HOH . H 4 HOH B 27 327 62 HOH HOH . H 4 HOH B 28 328 63 HOH HOH . H 4 HOH B 29 329 64 HOH HOH . H 4 HOH B 30 330 65 HOH HOH . H 4 HOH B 31 331 66 HOH HOH . H 4 HOH B 32 332 69 HOH HOH . H 4 HOH B 33 333 72 HOH HOH . H 4 HOH B 34 334 74 HOH HOH . H 4 HOH B 35 335 79 HOH HOH . H 4 HOH B 36 336 81 HOH HOH . H 4 HOH B 37 337 82 HOH HOH . H 4 HOH B 38 338 86 HOH HOH . H 4 HOH B 39 339 90 HOH HOH . H 4 HOH B 40 340 93 HOH HOH . H 4 HOH B 41 341 96 HOH HOH . H 4 HOH B 42 342 97 HOH HOH . H 4 HOH B 43 343 99 HOH HOH . H 4 HOH B 44 344 101 HOH HOH . H 4 HOH B 45 345 102 HOH HOH . H 4 HOH B 46 346 103 HOH HOH . H 4 HOH B 47 347 104 HOH HOH . H 4 HOH B 48 348 108 HOH HOH . H 4 HOH B 49 349 109 HOH HOH . H 4 HOH B 50 350 112 HOH HOH . H 4 HOH B 51 351 117 HOH HOH . H 4 HOH B 52 352 118 HOH HOH . H 4 HOH B 53 353 122 HOH HOH . H 4 HOH B 54 354 126 HOH HOH . H 4 HOH B 55 355 127 HOH HOH . H 4 HOH B 56 356 129 HOH HOH . H 4 HOH B 57 357 130 HOH HOH . H 4 HOH B 58 358 131 HOH HOH . H 4 HOH B 59 359 132 HOH HOH . H 4 HOH B 60 360 135 HOH HOH . H 4 HOH B 61 361 137 HOH HOH . H 4 HOH B 62 362 140 HOH HOH . H 4 HOH B 63 363 143 HOH HOH . H 4 HOH B 64 364 144 HOH HOH . H 4 HOH B 65 365 146 HOH HOH . H 4 HOH B 66 366 147 HOH HOH . H 4 HOH B 67 367 148 HOH HOH . H 4 HOH B 68 368 151 HOH HOH . H 4 HOH B 69 369 154 HOH HOH . H 4 HOH B 70 370 155 HOH HOH . H 4 HOH B 71 371 156 HOH HOH . H 4 HOH B 72 372 159 HOH HOH . H 4 HOH B 73 373 166 HOH HOH . H 4 HOH B 74 374 169 HOH HOH . H 4 HOH B 75 375 170 HOH HOH . H 4 HOH B 76 376 171 HOH HOH . H 4 HOH B 77 377 172 HOH HOH . H 4 HOH B 78 378 179 HOH HOH . H 4 HOH B 79 379 182 HOH HOH . H 4 HOH B 80 380 186 HOH HOH . H 4 HOH B 81 381 187 HOH HOH . H 4 HOH B 82 382 189 HOH HOH . H 4 HOH B 83 383 191 HOH HOH . H 4 HOH B 84 384 192 HOH HOH . H 4 HOH B 85 385 193 HOH HOH . H 4 HOH B 86 386 205 HOH HOH . H 4 HOH B 87 387 207 HOH HOH . H 4 HOH B 88 388 210 HOH HOH . H 4 HOH B 89 389 211 HOH HOH . H 4 HOH B 90 390 212 HOH HOH . H 4 HOH B 91 391 227 HOH HOH . H 4 HOH B 92 392 1 HOH HOH . H 4 HOH B 93 393 4 HOH HOH . H 4 HOH B 94 394 6 HOH HOH . H 4 HOH B 95 395 8 HOH HOH . H 4 HOH B 96 396 11 HOH HOH . H 4 HOH B 97 397 12 HOH HOH . H 4 HOH B 98 398 13 HOH HOH . I 4 HOH A 1 301 138 HOH HOH . I 4 HOH A 2 302 1 HOH HOH . I 4 HOH A 3 303 2 HOH HOH . I 4 HOH A 4 304 3 HOH HOH . I 4 HOH A 5 305 4 HOH HOH . I 4 HOH A 6 306 5 HOH HOH . I 4 HOH A 7 307 10 HOH HOH . I 4 HOH A 8 308 11 HOH HOH . I 4 HOH A 9 309 14 HOH HOH . I 4 HOH A 10 310 15 HOH HOH . I 4 HOH A 11 311 17 HOH HOH . I 4 HOH A 12 312 18 HOH HOH . I 4 HOH A 13 313 20 HOH HOH . I 4 HOH A 14 314 21 HOH HOH . I 4 HOH A 15 315 22 HOH HOH . I 4 HOH A 16 316 23 HOH HOH . I 4 HOH A 17 317 28 HOH HOH . I 4 HOH A 18 318 29 HOH HOH . I 4 HOH A 19 319 30 HOH HOH . I 4 HOH A 20 320 31 HOH HOH . I 4 HOH A 21 321 32 HOH HOH . I 4 HOH A 22 322 34 HOH HOH . I 4 HOH A 23 323 35 HOH HOH . I 4 HOH A 24 324 36 HOH HOH . I 4 HOH A 25 325 37 HOH HOH . I 4 HOH A 26 326 38 HOH HOH . I 4 HOH A 27 327 39 HOH HOH . I 4 HOH A 28 328 40 HOH HOH . I 4 HOH A 29 329 45 HOH HOH . I 4 HOH A 30 330 46 HOH HOH . I 4 HOH A 31 331 47 HOH HOH . I 4 HOH A 32 332 53 HOH HOH . I 4 HOH A 33 333 54 HOH HOH . I 4 HOH A 34 334 55 HOH HOH . I 4 HOH A 35 335 58 HOH HOH . I 4 HOH A 36 336 60 HOH HOH . I 4 HOH A 37 337 67 HOH HOH . I 4 HOH A 38 338 68 HOH HOH . I 4 HOH A 39 339 70 HOH HOH . I 4 HOH A 40 340 71 HOH HOH . I 4 HOH A 41 341 73 HOH HOH . I 4 HOH A 42 342 75 HOH HOH . I 4 HOH A 43 343 76 HOH HOH . I 4 HOH A 44 344 77 HOH HOH . I 4 HOH A 45 345 78 HOH HOH . I 4 HOH A 46 346 83 HOH HOH . I 4 HOH A 47 347 84 HOH HOH . I 4 HOH A 48 348 85 HOH HOH . I 4 HOH A 49 349 87 HOH HOH . I 4 HOH A 50 350 88 HOH HOH . I 4 HOH A 51 351 89 HOH HOH . I 4 HOH A 52 352 91 HOH HOH . I 4 HOH A 53 353 92 HOH HOH . I 4 HOH A 54 354 94 HOH HOH . I 4 HOH A 55 355 95 HOH HOH . I 4 HOH A 56 356 98 HOH HOH . I 4 HOH A 57 357 100 HOH HOH . I 4 HOH A 58 358 105 HOH HOH . I 4 HOH A 59 359 106 HOH HOH . I 4 HOH A 60 360 107 HOH HOH . I 4 HOH A 61 361 110 HOH HOH . I 4 HOH A 62 362 111 HOH HOH . I 4 HOH A 63 363 113 HOH HOH . I 4 HOH A 64 364 114 HOH HOH . I 4 HOH A 65 365 115 HOH HOH . I 4 HOH A 66 366 116 HOH HOH . I 4 HOH A 67 367 119 HOH HOH . I 4 HOH A 68 368 120 HOH HOH . I 4 HOH A 69 369 121 HOH HOH . I 4 HOH A 70 370 123 HOH HOH . I 4 HOH A 71 371 124 HOH HOH . I 4 HOH A 72 372 125 HOH HOH . I 4 HOH A 73 373 128 HOH HOH . I 4 HOH A 74 374 133 HOH HOH . I 4 HOH A 75 375 134 HOH HOH . I 4 HOH A 76 376 136 HOH HOH . I 4 HOH A 77 377 139 HOH HOH . I 4 HOH A 78 378 141 HOH HOH . I 4 HOH A 79 379 142 HOH HOH . I 4 HOH A 80 380 145 HOH HOH . I 4 HOH A 81 381 149 HOH HOH . I 4 HOH A 82 382 150 HOH HOH . I 4 HOH A 83 383 152 HOH HOH . I 4 HOH A 84 384 153 HOH HOH . I 4 HOH A 85 385 157 HOH HOH . I 4 HOH A 86 386 158 HOH HOH . I 4 HOH A 87 387 160 HOH HOH . I 4 HOH A 88 388 161 HOH HOH . I 4 HOH A 89 389 162 HOH HOH . I 4 HOH A 90 390 163 HOH HOH . I 4 HOH A 91 391 164 HOH HOH . I 4 HOH A 92 392 165 HOH HOH . I 4 HOH A 93 393 167 HOH HOH . I 4 HOH A 94 394 173 HOH HOH . I 4 HOH A 95 395 174 HOH HOH . I 4 HOH A 96 396 175 HOH HOH . I 4 HOH A 97 397 176 HOH HOH . I 4 HOH A 98 398 177 HOH HOH . I 4 HOH A 99 399 178 HOH HOH . I 4 HOH A 100 400 180 HOH HOH . I 4 HOH A 101 401 181 HOH HOH . I 4 HOH A 102 402 183 HOH HOH . I 4 HOH A 103 403 184 HOH HOH . I 4 HOH A 104 404 185 HOH HOH . I 4 HOH A 105 405 188 HOH HOH . I 4 HOH A 106 406 190 HOH HOH . I 4 HOH A 107 407 194 HOH HOH . I 4 HOH A 108 408 195 HOH HOH . I 4 HOH A 109 409 196 HOH HOH . I 4 HOH A 110 410 197 HOH HOH . I 4 HOH A 111 411 198 HOH HOH . I 4 HOH A 112 412 199 HOH HOH . I 4 HOH A 113 413 201 HOH HOH . I 4 HOH A 114 414 202 HOH HOH . I 4 HOH A 115 415 203 HOH HOH . I 4 HOH A 116 416 204 HOH HOH . I 4 HOH A 117 417 206 HOH HOH . I 4 HOH A 118 418 208 HOH HOH . I 4 HOH A 119 419 209 HOH HOH . I 4 HOH A 120 420 213 HOH HOH . I 4 HOH A 121 421 215 HOH HOH . I 4 HOH A 122 422 216 HOH HOH . I 4 HOH A 123 423 217 HOH HOH . I 4 HOH A 124 424 218 HOH HOH . I 4 HOH A 125 425 219 HOH HOH . I 4 HOH A 126 426 220 HOH HOH . I 4 HOH A 127 427 221 HOH HOH . I 4 HOH A 128 428 222 HOH HOH . I 4 HOH A 129 429 223 HOH HOH . I 4 HOH A 130 430 224 HOH HOH . I 4 HOH A 131 431 225 HOH HOH . I 4 HOH A 132 432 226 HOH HOH . I 4 HOH A 133 433 228 HOH HOH . I 4 HOH A 134 434 229 HOH HOH . I 4 HOH A 135 435 230 HOH HOH . I 4 HOH A 136 436 231 HOH HOH . I 4 HOH A 137 437 232 HOH HOH . I 4 HOH A 138 438 233 HOH HOH . I 4 HOH A 139 439 2 HOH HOH . I 4 HOH A 140 440 3 HOH HOH . I 4 HOH A 141 441 5 HOH HOH . I 4 HOH A 142 442 7 HOH HOH . I 4 HOH A 143 443 9 HOH HOH . I 4 HOH A 144 444 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 14.501 20.626 -1.679 1 51.79 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . D 3 14.354 21.74 -2.536 1 54.63 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . D 3 14.006 19.399 -2.405 1 47.71 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . D 3 15.142 18.571 -2.789 1 47.05 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . D 3 12.944 18.737 -1.531 1 41.17 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . D 3 11.617 19.316 -1.775 1 44.05 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #