data_4GNC
#
_model_server_result.job_id            4iUgBj3wjRqnsMX9qJ3Kxw 
_model_server_result.datetime_utc      '2024-11-14 09:40:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gnc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":302}' 
#
_entry.id    4GNC 
#
_exptl.entry_id    4GNC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-anhydro-D-glucitol 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.65 
_cell.angle_gamma         90 
_cell.entry_id            4GNC 
_cell.length_a            64.407 
_cell.length_b            50.202 
_cell.length_c            86.569 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GNC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 18 A GLU 18 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A OD1 ASP 104 A ASP 104 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc3 A OD2 ASP 104 A ASP 104 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc4 A OD1 ASN 154 A ASN 154 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc5 A OD1 ASP 204 A ASP 204 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc6 C CA CA . A CA 301 1_555 E O2 ASO . A ASO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc7 C CA CA . A CA 301 1_555 E O3 ASO . A ASO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc8 C CA CA . A CA 301 1_555 J O HOH . A HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc9 B OE2 GLU 18 B GLU 18 1_555 F CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc10 B OD1 ASP 104 B ASP 104 1_555 F CA CA . B CA 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc11 B OD2 ASP 104 B ASP 104 1_555 F CA CA . B CA 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc12 B OD1 ASN 154 B ASN 154 1_555 F CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc13 B OD1 ASP 204 B ASP 204 1_555 F CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc14 F CA CA . B CA 301 1_555 G O3 ASO . B ASO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc15 F CA CA . B CA 301 1_555 G O2 ASO . B ASO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc16 F CA CA . B CA 301 1_555 K O HOH . B HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'C6 H12 O5' 
_chem_comp.formula_weight    164.156 
_chem_comp.id                ASO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-anhydro-D-glucitol 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     1,5-ANHYDROSORBITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ASO sing 55 n n 
C1 O5 ASO sing 56 n n 
C1 H1 ASO sing 57 n n 
C1 H12 ASO sing 58 n n 
C2 C3 ASO sing 59 n n 
C2 O2 ASO sing 60 n n 
C2 H2 ASO sing 61 n n 
C3 C4 ASO sing 62 n n 
C3 O3 ASO sing 63 n n 
C3 H3 ASO sing 64 n n 
C4 C5 ASO sing 65 n n 
C4 O4 ASO sing 66 n n 
C4 H4 ASO sing 67 n n 
C5 C6 ASO sing 68 n n 
C5 O5 ASO sing 69 n n 
C5 H5 ASO sing 70 n n 
C6 O6 ASO sing 71 n n 
C6 H61 ASO sing 72 n n 
C6 H62 ASO sing 73 n n 
O2 HO2 ASO sing 74 n n 
O3 HO3 ASO sing 75 n n 
O4 HO4 ASO sing 76 n n 
O6 HO6 ASO sing 77 n n 
#
_pdbx_chem_comp_identifier.comp_id            ASO 
_pdbx_chem_comp_identifier.identifier         D-1-deoxy-Glcp 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4GNC 
_atom_sites.fract_transf_matrix[1][1]    0.015526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002641 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01992 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 301 1 CA CA . 
D 3 ASO A 1 302 3 ASO DRG . 
E 3 ASO A 1 303 4 ASO DRG . 
F 2 CA B 1 301 2 CA CA . 
G 3 ASO B 1 302 1 ASO DRG . 
H 3 ASO B 1 303 2 ASO DRG . 
I 3 ASO B 1 304 5 ASO DRG . 
J 4 HOH A 1 401 2 HOH HOH . 
J 4 HOH A 2 402 4 HOH HOH . 
J 4 HOH A 3 403 6 HOH HOH . 
J 4 HOH A 4 404 9 HOH HOH . 
J 4 HOH A 5 405 14 HOH HOH . 
J 4 HOH A 6 406 15 HOH HOH . 
J 4 HOH A 7 407 16 HOH HOH . 
J 4 HOH A 8 408 18 HOH HOH . 
J 4 HOH A 9 409 23 HOH HOH . 
J 4 HOH A 10 410 24 HOH HOH . 
J 4 HOH A 11 411 26 HOH HOH . 
J 4 HOH A 12 412 27 HOH HOH . 
J 4 HOH A 13 413 28 HOH HOH . 
J 4 HOH A 14 414 30 HOH HOH . 
J 4 HOH A 15 415 33 HOH HOH . 
J 4 HOH A 16 416 34 HOH HOH . 
J 4 HOH A 17 417 36 HOH HOH . 
J 4 HOH A 18 418 38 HOH HOH . 
J 4 HOH A 19 419 43 HOH HOH . 
J 4 HOH A 20 420 44 HOH HOH . 
J 4 HOH A 21 421 45 HOH HOH . 
J 4 HOH A 22 422 46 HOH HOH . 
J 4 HOH A 23 423 50 HOH HOH . 
J 4 HOH A 24 424 51 HOH HOH . 
J 4 HOH A 25 425 53 HOH HOH . 
J 4 HOH A 26 426 54 HOH HOH . 
J 4 HOH A 27 427 56 HOH HOH . 
J 4 HOH A 28 428 58 HOH HOH . 
J 4 HOH A 29 429 59 HOH HOH . 
J 4 HOH A 30 430 60 HOH HOH . 
J 4 HOH A 31 431 64 HOH HOH . 
J 4 HOH A 32 432 68 HOH HOH . 
J 4 HOH A 33 433 69 HOH HOH . 
J 4 HOH A 34 434 70 HOH HOH . 
J 4 HOH A 35 435 71 HOH HOH . 
J 4 HOH A 36 436 72 HOH HOH . 
J 4 HOH A 37 437 73 HOH HOH . 
J 4 HOH A 38 438 74 HOH HOH . 
J 4 HOH A 39 439 75 HOH HOH . 
J 4 HOH A 40 440 78 HOH HOH . 
J 4 HOH A 41 441 80 HOH HOH . 
J 4 HOH A 42 442 81 HOH HOH . 
J 4 HOH A 43 443 82 HOH HOH . 
J 4 HOH A 44 444 85 HOH HOH . 
J 4 HOH A 45 445 89 HOH HOH . 
J 4 HOH A 46 446 90 HOH HOH . 
J 4 HOH A 47 447 92 HOH HOH . 
J 4 HOH A 48 448 97 HOH HOH . 
J 4 HOH A 49 449 102 HOH HOH . 
J 4 HOH A 50 450 106 HOH HOH . 
J 4 HOH A 51 451 108 HOH HOH . 
J 4 HOH A 52 452 111 HOH HOH . 
J 4 HOH A 53 453 112 HOH HOH . 
J 4 HOH A 54 454 113 HOH HOH . 
J 4 HOH A 55 455 115 HOH HOH . 
J 4 HOH A 56 456 116 HOH HOH . 
J 4 HOH A 57 457 121 HOH HOH . 
J 4 HOH A 58 458 122 HOH HOH . 
J 4 HOH A 59 459 126 HOH HOH . 
J 4 HOH A 60 460 130 HOH HOH . 
J 4 HOH A 61 461 131 HOH HOH . 
J 4 HOH A 62 462 134 HOH HOH . 
J 4 HOH A 63 463 136 HOH HOH . 
J 4 HOH A 64 464 138 HOH HOH . 
J 4 HOH A 65 465 141 HOH HOH . 
J 4 HOH A 66 466 143 HOH HOH . 
J 4 HOH A 67 467 145 HOH HOH . 
J 4 HOH A 68 468 147 HOH HOH . 
J 4 HOH A 69 469 156 HOH HOH . 
J 4 HOH A 70 470 159 HOH HOH . 
J 4 HOH A 71 471 171 HOH HOH . 
J 4 HOH A 72 472 172 HOH HOH . 
J 4 HOH A 73 473 175 HOH HOH . 
J 4 HOH A 74 474 184 HOH HOH . 
J 4 HOH A 75 475 193 HOH HOH . 
J 4 HOH A 76 476 201 HOH HOH . 
J 4 HOH A 77 477 206 HOH HOH . 
J 4 HOH A 78 478 207 HOH HOH . 
J 4 HOH A 79 479 211 HOH HOH . 
J 4 HOH A 80 480 212 HOH HOH . 
J 4 HOH A 81 481 213 HOH HOH . 
K 4 HOH B 1 401 3 HOH HOH . 
K 4 HOH B 2 402 7 HOH HOH . 
K 4 HOH B 3 403 8 HOH HOH . 
K 4 HOH B 4 404 10 HOH HOH . 
K 4 HOH B 5 405 11 HOH HOH . 
K 4 HOH B 6 406 12 HOH HOH . 
K 4 HOH B 7 407 13 HOH HOH . 
K 4 HOH B 8 408 17 HOH HOH . 
K 4 HOH B 9 409 19 HOH HOH . 
K 4 HOH B 10 410 20 HOH HOH . 
K 4 HOH B 11 411 21 HOH HOH . 
K 4 HOH B 12 412 22 HOH HOH . 
K 4 HOH B 13 413 25 HOH HOH . 
K 4 HOH B 14 414 31 HOH HOH . 
K 4 HOH B 15 415 32 HOH HOH . 
K 4 HOH B 16 416 35 HOH HOH . 
K 4 HOH B 17 417 37 HOH HOH . 
K 4 HOH B 18 418 39 HOH HOH . 
K 4 HOH B 19 419 40 HOH HOH . 
K 4 HOH B 20 420 41 HOH HOH . 
K 4 HOH B 21 421 42 HOH HOH . 
K 4 HOH B 22 422 47 HOH HOH . 
K 4 HOH B 23 423 48 HOH HOH . 
K 4 HOH B 24 424 49 HOH HOH . 
K 4 HOH B 25 425 55 HOH HOH . 
K 4 HOH B 26 426 57 HOH HOH . 
K 4 HOH B 27 427 61 HOH HOH . 
K 4 HOH B 28 428 62 HOH HOH . 
K 4 HOH B 29 429 63 HOH HOH . 
K 4 HOH B 30 430 65 HOH HOH . 
K 4 HOH B 31 431 66 HOH HOH . 
K 4 HOH B 32 432 67 HOH HOH . 
K 4 HOH B 33 433 76 HOH HOH . 
K 4 HOH B 34 434 77 HOH HOH . 
K 4 HOH B 35 435 79 HOH HOH . 
K 4 HOH B 36 436 83 HOH HOH . 
K 4 HOH B 37 437 84 HOH HOH . 
K 4 HOH B 38 438 86 HOH HOH . 
K 4 HOH B 39 439 87 HOH HOH . 
K 4 HOH B 40 440 91 HOH HOH . 
K 4 HOH B 41 441 93 HOH HOH . 
K 4 HOH B 42 442 94 HOH HOH . 
K 4 HOH B 43 443 96 HOH HOH . 
K 4 HOH B 44 444 100 HOH HOH . 
K 4 HOH B 45 445 101 HOH HOH . 
K 4 HOH B 46 446 103 HOH HOH . 
K 4 HOH B 47 447 104 HOH HOH . 
K 4 HOH B 48 448 105 HOH HOH . 
K 4 HOH B 49 449 107 HOH HOH . 
K 4 HOH B 50 450 109 HOH HOH . 
K 4 HOH B 51 451 110 HOH HOH . 
K 4 HOH B 52 452 119 HOH HOH . 
K 4 HOH B 53 453 124 HOH HOH . 
K 4 HOH B 54 454 128 HOH HOH . 
K 4 HOH B 55 455 132 HOH HOH . 
K 4 HOH B 56 456 133 HOH HOH . 
K 4 HOH B 57 457 135 HOH HOH . 
K 4 HOH B 58 458 137 HOH HOH . 
K 4 HOH B 59 459 139 HOH HOH . 
K 4 HOH B 60 460 144 HOH HOH . 
K 4 HOH B 61 461 146 HOH HOH . 
K 4 HOH B 62 462 148 HOH HOH . 
K 4 HOH B 63 463 149 HOH HOH . 
K 4 HOH B 64 464 150 HOH HOH . 
K 4 HOH B 65 465 154 HOH HOH . 
K 4 HOH B 66 466 155 HOH HOH . 
K 4 HOH B 67 467 158 HOH HOH . 
K 4 HOH B 68 468 167 HOH HOH . 
K 4 HOH B 69 469 180 HOH HOH . 
K 4 HOH B 70 470 187 HOH HOH . 
K 4 HOH B 71 471 191 HOH HOH . 
K 4 HOH B 72 472 194 HOH HOH . 
K 4 HOH B 73 473 195 HOH HOH . 
K 4 HOH B 74 474 198 HOH HOH . 
K 4 HOH B 75 475 202 HOH HOH . 
K 4 HOH B 76 476 214 HOH HOH . 
K 4 HOH B 77 477 216 HOH HOH . 
K 4 HOH B 78 478 217 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ASO . . . G 3 6.736 3.257 32.123 1 28.47 ? C1 ASO 302 B 1 
HETATM 2 C C2 ASO . . . G 3 7.275 1.862 31.867 1 27.97 ? C2 ASO 302 B 1 
HETATM 3 C C3 ASO . . . G 3 8.549 1.943 31.105 1 23.7 ? C3 ASO 302 B 1 
HETATM 4 C C4 ASO . . . G 3 8.284 2.637 29.78 1 28.02 ? C4 ASO 302 B 1 
HETATM 5 C C5 ASO . . . G 3 7.686 4.017 30.049 1 31.2 ? C5 ASO 302 B 1 
HETATM 6 C C6 ASO . . . G 3 7.342 4.703 28.715 1 31.77 ? C6 ASO 302 B 1 
HETATM 7 O O2 ASO . . . G 3 7.55 1.202 33.104 1 28.03 ? O2 ASO 302 B 1 
HETATM 8 O O3 ASO . . . G 3 8.969 0.599 30.923 1 24.63 ? O3 ASO 302 B 1 
HETATM 9 O O4 ASO . . . G 3 9.492 2.749 28.99 1 28.09 ? O4 ASO 302 B 1 
HETATM 10 O O5 ASO . . . G 3 6.504 3.897 30.853 1 29.97 ? O5 ASO 302 B 1 
HETATM 11 O O6 ASO . . . G 3 6.765 5.992 28.981 1 39.01 ? O6 ASO 302 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#