data_4GND
#
_model_server_result.job_id            2q3T7CYVhE1TWvi3rFlwdQ 
_model_server_result.datetime_utc      '2024-12-23 05:44:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1501}' 
#
_entry.id    4GND 
#
_exptl.entry_id    4GND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GND 
_cell.length_a            58.51 
_cell.length_b            58.51 
_cell.length_c            108.581 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 18 A CYS 1324 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A SG CYS 21 A CYS 1327 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc3 A SG CYS 30 A CYS 1336 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc4 A SG CYS 35 A CYS 1341 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 A ND1 HIS 40 A HIS 1346 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc6 A SG CYS 43 A CYS 1349 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc7 A SG CYS 56 A CYS 1362 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc8 A NE2 HIS 59 A HIS 1365 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc9 A SG CYS 61 A CYS 1367 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc10 A SG CYS 64 A CYS 1370 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc11 A SG CYS 72 A CYS 1378 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc12 A SG CYS 75 A CYS 1381 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc13 A SG CYS 80 A CYS 1386 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc14 A ND1 HIS 83 A HIS 1389 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc15 A SG CYS 99 A CYS 1405 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc16 A NE2 HIS 102 A HIS 1408 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc17 B SG CYS 18 C CYS 1324 1_555 G ZN ZN . C ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc18 B SG CYS 21 C CYS 1327 1_555 G ZN ZN . C ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc19 B SG CYS 30 C CYS 1336 1_555 H ZN ZN . C ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc20 B SG CYS 35 C CYS 1341 1_555 H ZN ZN . C ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc21 B ND1 HIS 40 C HIS 1346 1_555 G ZN ZN . C ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc22 B SG CYS 43 C CYS 1349 1_555 G ZN ZN . C ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc23 B SG CYS 56 C CYS 1362 1_555 H ZN ZN . C ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc24 B NE2 HIS 59 C HIS 1365 1_555 H ZN ZN . C ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc25 B SG CYS 61 C CYS 1367 1_555 J ZN ZN . C ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc26 B SG CYS 64 C CYS 1370 1_555 J ZN ZN . C ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc27 B SG CYS 72 C CYS 1378 1_555 I ZN ZN . C ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc28 B SG CYS 75 C CYS 1381 1_555 I ZN ZN . C ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc29 B SG CYS 80 C CYS 1386 1_555 J ZN ZN . C ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc30 B ND1 HIS 83 C HIS 1389 1_555 J ZN ZN . C ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc31 B SG CYS 99 C CYS 1405 1_555 I ZN ZN . C ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc32 B NE2 HIS 102 C HIS 1408 1_555 I ZN ZN . C ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4GND 
_atom_sites.fract_transf_matrix[1][1]    0.017091 
_atom_sites.fract_transf_matrix[1][2]    0.009868 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00921 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1501 1 ZN ZN . 
D 2 ZN A 1 1502 2 ZN ZN . 
E 2 ZN A 1 1503 3 ZN ZN . 
F 2 ZN A 1 1504 4 ZN ZN . 
G 2 ZN C 1 1501 1 ZN ZN . 
H 2 ZN C 1 1502 2 ZN ZN . 
I 2 ZN C 1 1503 3 ZN ZN . 
J 2 ZN C 1 1504 4 ZN ZN . 
K 3 HOH A 1 1601 6 HOH HOH . 
K 3 HOH A 2 1602 13 HOH HOH . 
K 3 HOH A 3 1603 17 HOH HOH . 
K 3 HOH A 4 1604 21 HOH HOH . 
K 3 HOH A 5 1605 24 HOH HOH . 
K 3 HOH A 6 1606 28 HOH HOH . 
L 3 HOH C 1 1601 2 HOH HOH . 
L 3 HOH C 2 1602 3 HOH HOH . 
L 3 HOH C 3 1603 5 HOH HOH . 
L 3 HOH C 4 1604 7 HOH HOH . 
L 3 HOH C 5 1605 8 HOH HOH . 
L 3 HOH C 6 1606 9 HOH HOH . 
L 3 HOH C 7 1607 10 HOH HOH . 
L 3 HOH C 8 1608 11 HOH HOH . 
L 3 HOH C 9 1609 12 HOH HOH . 
L 3 HOH C 10 1610 14 HOH HOH . 
L 3 HOH C 11 1611 15 HOH HOH . 
L 3 HOH C 12 1612 25 HOH HOH . 
L 3 HOH C 13 1613 26 HOH HOH . 
L 3 HOH C 14 1614 27 HOH HOH . 
L 3 HOH C 15 1615 29 HOH HOH . 
L 3 HOH C 16 1616 30 HOH HOH . 
L 3 HOH C 17 1617 31 HOH HOH . 
L 3 HOH C 18 1618 32 HOH HOH . 
L 3 HOH C 19 1619 33 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -20.222 
_atom_site.Cartn_y               -7.878 
_atom_site.Cartn_z               47.259 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.03 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1501 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#