data_4GNE # _model_server_result.job_id gorzSeM9vC8lPs6Tw_xCAw _model_server_result.datetime_utc '2024-11-25 07:13:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1502}' # _entry.id 4GNE # _exptl.entry_id 4GNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4GNE _cell.length_a 57.2 _cell.length_b 57.2 _cell.length_c 107.44 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 18 A CYS 1324 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A SG CYS 21 A CYS 1327 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A SG CYS 30 A CYS 1336 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 A SG CYS 35 A CYS 1341 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 A ND1 HIS 40 A HIS 1346 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 A SG CYS 43 A CYS 1349 1_555 C ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc7 A SG CYS 56 A CYS 1362 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc8 A NE2 HIS 59 A HIS 1365 1_555 D ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc9 A SG CYS 61 A CYS 1367 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 A SG CYS 64 A CYS 1370 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc11 A SG CYS 72 A CYS 1378 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc12 A SG CYS 75 A CYS 1381 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc13 A SG CYS 80 A CYS 1386 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc14 A ND1 HIS 83 A HIS 1389 1_555 F ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc15 A SG CYS 99 A CYS 1405 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc16 A NE2 HIS 102 A HIS 1408 1_555 E ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GNE _atom_sites.fract_transf_matrix[1][1] 0.017483 _atom_sites.fract_transf_matrix[1][2] 0.010094 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1501 1 ZN ZN . D 3 ZN A 1 1502 2 ZN ZN . E 3 ZN A 1 1503 3 ZN ZN . F 3 ZN A 1 1504 4 ZN ZN . G 4 HOH A 1 1601 1 HOH HOH . G 4 HOH A 2 1602 2 HOH HOH . G 4 HOH A 3 1603 3 HOH HOH . G 4 HOH A 4 1604 4 HOH HOH . G 4 HOH A 5 1605 5 HOH HOH . G 4 HOH A 6 1606 6 HOH HOH . G 4 HOH A 7 1607 7 HOH HOH . G 4 HOH A 8 1608 9 HOH HOH . G 4 HOH A 9 1609 10 HOH HOH . G 4 HOH A 10 1610 11 HOH HOH . G 4 HOH A 11 1611 12 HOH HOH . G 4 HOH A 12 1612 13 HOH HOH . G 4 HOH A 13 1613 14 HOH HOH . G 4 HOH A 14 1614 15 HOH HOH . G 4 HOH A 15 1615 16 HOH HOH . G 4 HOH A 16 1616 17 HOH HOH . G 4 HOH A 17 1617 18 HOH HOH . G 4 HOH A 18 1618 19 HOH HOH . G 4 HOH A 19 1619 21 HOH HOH . G 4 HOH A 20 1620 22 HOH HOH . G 4 HOH A 21 1621 23 HOH HOH . G 4 HOH A 22 1622 24 HOH HOH . G 4 HOH A 23 1623 25 HOH HOH . G 4 HOH A 24 1624 26 HOH HOH . G 4 HOH A 25 1625 27 HOH HOH . G 4 HOH A 26 1626 28 HOH HOH . G 4 HOH A 27 1627 29 HOH HOH . G 4 HOH A 28 1628 30 HOH HOH . G 4 HOH A 29 1629 31 HOH HOH . G 4 HOH A 30 1630 32 HOH HOH . G 4 HOH A 31 1631 33 HOH HOH . G 4 HOH A 32 1632 35 HOH HOH . G 4 HOH A 33 1633 36 HOH HOH . G 4 HOH A 34 1634 37 HOH HOH . G 4 HOH A 35 1635 38 HOH HOH . G 4 HOH A 36 1636 39 HOH HOH . G 4 HOH A 37 1637 40 HOH HOH . G 4 HOH A 38 1638 41 HOH HOH . G 4 HOH A 39 1639 44 HOH HOH . G 4 HOH A 40 1640 45 HOH HOH . G 4 HOH A 41 1641 46 HOH HOH . G 4 HOH A 42 1642 47 HOH HOH . G 4 HOH A 43 1643 48 HOH HOH . G 4 HOH A 44 1644 49 HOH HOH . G 4 HOH A 45 1645 50 HOH HOH . G 4 HOH A 46 1646 51 HOH HOH . G 4 HOH A 47 1647 52 HOH HOH . G 4 HOH A 48 1648 53 HOH HOH . G 4 HOH A 49 1649 55 HOH HOH . G 4 HOH A 50 1650 56 HOH HOH . G 4 HOH A 51 1651 57 HOH HOH . G 4 HOH A 52 1652 58 HOH HOH . G 4 HOH A 53 1653 59 HOH HOH . G 4 HOH A 54 1654 60 HOH HOH . G 4 HOH A 55 1655 61 HOH HOH . G 4 HOH A 56 1656 62 HOH HOH . G 4 HOH A 57 1657 63 HOH HOH . G 4 HOH A 58 1658 64 HOH HOH . G 4 HOH A 59 1659 65 HOH HOH . G 4 HOH A 60 1660 66 HOH HOH . G 4 HOH A 61 1661 67 HOH HOH . G 4 HOH A 62 1662 68 HOH HOH . G 4 HOH A 63 1663 69 HOH HOH . G 4 HOH A 64 1664 71 HOH HOH . G 4 HOH A 65 1665 72 HOH HOH . G 4 HOH A 66 1666 73 HOH HOH . G 4 HOH A 67 1667 74 HOH HOH . G 4 HOH A 68 1668 75 HOH HOH . G 4 HOH A 69 1669 76 HOH HOH . G 4 HOH A 70 1670 77 HOH HOH . G 4 HOH A 71 1671 78 HOH HOH . G 4 HOH A 72 1672 79 HOH HOH . G 4 HOH A 73 1673 82 HOH HOH . G 4 HOH A 74 1674 83 HOH HOH . G 4 HOH A 75 1675 85 HOH HOH . G 4 HOH A 76 1676 87 HOH HOH . G 4 HOH A 77 1677 88 HOH HOH . G 4 HOH A 78 1678 90 HOH HOH . G 4 HOH A 79 1679 92 HOH HOH . G 4 HOH A 80 1680 93 HOH HOH . G 4 HOH A 81 1681 94 HOH HOH . G 4 HOH A 82 1682 96 HOH HOH . G 4 HOH A 83 1683 97 HOH HOH . G 4 HOH A 84 1684 98 HOH HOH . G 4 HOH A 85 1685 99 HOH HOH . G 4 HOH A 86 1686 100 HOH HOH . G 4 HOH A 87 1687 101 HOH HOH . G 4 HOH A 88 1688 102 HOH HOH . G 4 HOH A 89 1689 103 HOH HOH . G 4 HOH A 90 1690 104 HOH HOH . G 4 HOH A 91 1691 105 HOH HOH . G 4 HOH A 92 1692 107 HOH HOH . G 4 HOH A 93 1693 108 HOH HOH . G 4 HOH A 94 1694 109 HOH HOH . G 4 HOH A 95 1695 110 HOH HOH . G 4 HOH A 96 1696 111 HOH HOH . G 4 HOH A 97 1697 112 HOH HOH . G 4 HOH A 98 1698 114 HOH HOH . G 4 HOH A 99 1699 116 HOH HOH . G 4 HOH A 100 1700 117 HOH HOH . G 4 HOH A 101 1701 118 HOH HOH . G 4 HOH A 102 1702 119 HOH HOH . G 4 HOH A 103 1703 120 HOH HOH . G 4 HOH A 104 1704 121 HOH HOH . G 4 HOH A 105 1705 122 HOH HOH . G 4 HOH A 106 1706 123 HOH HOH . G 4 HOH A 107 1707 129 HOH HOH . G 4 HOH A 108 1708 131 HOH HOH . G 4 HOH A 109 1709 132 HOH HOH . G 4 HOH A 110 1710 133 HOH HOH . G 4 HOH A 111 1711 134 HOH HOH . G 4 HOH A 112 1712 135 HOH HOH . G 4 HOH A 113 1713 137 HOH HOH . G 4 HOH A 114 1714 138 HOH HOH . G 4 HOH A 115 1715 139 HOH HOH . G 4 HOH A 116 1716 142 HOH HOH . G 4 HOH A 117 1717 145 HOH HOH . G 4 HOH A 118 1718 147 HOH HOH . G 4 HOH A 119 1719 148 HOH HOH . G 4 HOH A 120 1720 152 HOH HOH . G 4 HOH A 121 1721 153 HOH HOH . G 4 HOH A 122 1722 154 HOH HOH . G 4 HOH A 123 1723 155 HOH HOH . G 4 HOH A 124 1724 156 HOH HOH . G 4 HOH A 125 1725 157 HOH HOH . H 4 HOH B 1 101 8 HOH HOH . H 4 HOH B 2 102 20 HOH HOH . H 4 HOH B 3 103 34 HOH HOH . H 4 HOH B 4 104 42 HOH HOH . H 4 HOH B 5 105 43 HOH HOH . H 4 HOH B 6 106 70 HOH HOH . H 4 HOH B 7 107 80 HOH HOH . H 4 HOH B 8 108 84 HOH HOH . H 4 HOH B 9 109 91 HOH HOH . H 4 HOH B 10 110 124 HOH HOH . H 4 HOH B 11 111 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.884 _atom_site.Cartn_y -24.33 _atom_site.Cartn_z -0.146 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #