data_4GNK # _model_server_result.job_id Y6HkvBwcNyMm51In-agbFw _model_server_result.datetime_utc '2024-11-01 07:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 4GNK # _exptl.entry_id 4GNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GNK _cell.length_a 91.423 _cell.length_b 188.845 _cell.length_c 293.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,N 1 1 C,D,J,K,L,M,O 2 1 E 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 47 A SER 53 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A OG1 THR 180 A THR 186 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 F O2B GDP . A GDP 401 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 F O3B GDP . A GDP 401 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc5 H MG MG . A MG 403 1_555 N O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 H MG MG . A MG 403 1_555 N O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc7 B OD1 ASN 334 B ASN 333 1_555 I CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 B OE1 GLU 363 B GLU 362 1_555 I CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc9 B OD2 ASP 365 B ASP 364 1_555 I CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc10 B OE1 GLU 414 B GLU 413 1_555 I CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc11 C OG SER 47 C SER 53 1_555 L MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc12 C OG1 THR 180 C THR 186 1_555 L MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc13 J O2B GDP . C GDP 401 1_555 L MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? metalc ? metalc14 L MG MG . C MG 403 1_555 O O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc15 L MG MG . C MG 403 1_555 O O HOH . C HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc16 D OD1 ASN 334 D ASN 333 1_555 M CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc17 D OE1 GLU 363 D GLU 362 1_555 M CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc18 D OD2 ASP 365 D ASP 364 1_555 M CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc19 D OE1 GLU 414 D GLU 413 1_555 M CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GNK _atom_sites.fract_transf_matrix[1][1] 0.010938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GDP A 1 401 360 GDP GDP . G 5 ALF A 1 402 361 ALF AMF . H 6 MG A 1 403 361 MG AMF . I 7 CA B 1 1301 900 CA CA . J 4 GDP C 1 401 360 GDP GDP . K 5 ALF C 1 402 361 ALF AMF . L 6 MG C 1 403 361 MG AMF . M 7 CA D 1 1301 900 CA CA . N 8 HOH A 1 501 361 HOH AMF . N 8 HOH A 2 502 361 HOH AMF . N 8 HOH A 3 503 361 HOH AMF . O 8 HOH C 1 501 361 HOH AMF . O 8 HOH C 2 502 361 HOH AMF . O 8 HOH C 3 503 361 HOH AMF . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -28.148 _atom_site.Cartn_y 31.484 _atom_site.Cartn_z -52.664 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 96.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #