data_4GO0 # _model_server_result.job_id KDwMifDzWAato8HsYURJjg _model_server_result.datetime_utc '2024-11-28 18:08:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4go0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 4GO0 # _exptl.entry_id 4GO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.82 _cell.angle_gamma 90 _cell.entry_id 4GO0 _cell.length_a 258.42 _cell.length_b 194.131 _cell.length_c 96.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 235 n n PA O2A NDP sing 236 n n PA O5B NDP sing 237 n n PA O3 NDP sing 238 n n O2A HOA2 NDP sing 239 n n O5B C5B NDP sing 240 n n C5B C4B NDP sing 241 n n C5B H51A NDP sing 242 n n C5B H52A NDP sing 243 n n C4B O4B NDP sing 244 n n C4B C3B NDP sing 245 n n C4B H4B NDP sing 246 n n O4B C1B NDP sing 247 n n C3B O3B NDP sing 248 n n C3B C2B NDP sing 249 n n C3B H3B NDP sing 250 n n O3B HO3A NDP sing 251 n n C2B O2B NDP sing 252 n n C2B C1B NDP sing 253 n n C2B H2B NDP sing 254 n n O2B P2B NDP sing 255 n n C1B N9A NDP sing 256 n n C1B H1B NDP sing 257 n n N9A C8A NDP sing 258 n y N9A C4A NDP sing 259 n y C8A N7A NDP doub 260 n y C8A H8A NDP sing 261 n n N7A C5A NDP sing 262 n y C5A C6A NDP sing 263 n y C5A C4A NDP doub 264 n y C6A N6A NDP sing 265 n n C6A N1A NDP doub 266 n y N6A H61A NDP sing 267 n n N6A H62A NDP sing 268 n n N1A C2A NDP sing 269 n y C2A N3A NDP doub 270 n y C2A H2A NDP sing 271 n n N3A C4A NDP sing 272 n y O3 PN NDP sing 273 n n PN O1N NDP doub 274 n n PN O2N NDP sing 275 n n PN O5D NDP sing 276 n n O2N H21N NDP sing 277 n n O5D C5D NDP sing 278 n n C5D C4D NDP sing 279 n n C5D H51N NDP sing 280 n n C5D H52N NDP sing 281 n n C4D O4D NDP sing 282 n n C4D C3D NDP sing 283 n n C4D H4D NDP sing 284 n n O4D C1D NDP sing 285 n n C3D O3D NDP sing 286 n n C3D C2D NDP sing 287 n n C3D H3D NDP sing 288 n n O3D HO3N NDP sing 289 n n C2D O2D NDP sing 290 n n C2D C1D NDP sing 291 n n C2D H2D NDP sing 292 n n O2D HO2N NDP sing 293 n n C1D N1N NDP sing 294 n n C1D H1D NDP sing 295 n n N1N C2N NDP sing 296 n n N1N C6N NDP sing 297 n n C2N C3N NDP doub 298 n n C2N H2N NDP sing 299 n n C3N C7N NDP sing 300 n n C3N C4N NDP sing 301 n n C7N O7N NDP doub 302 n n C7N N7N NDP sing 303 n n N7N H71N NDP sing 304 n n N7N H72N NDP sing 305 n n C4N C5N NDP sing 306 n n C4N H41N NDP sing 307 n n C4N H42N NDP sing 308 n n C5N C6N NDP doub 309 n n C5N H5N NDP sing 310 n n C6N H6N NDP sing 311 n n P2B O1X NDP doub 312 n n P2B O2X NDP sing 313 n n P2B O3X NDP sing 314 n n O2X HOP2 NDP sing 315 n n O3X HOP3 NDP sing 316 n n # _atom_sites.entry_id 4GO0 _atom_sites.fract_transf_matrix[1][1] 0.00387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001319 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 1001 903 NDP NDP . F 2 NDP B 1 1001 903 NDP NDP . G 2 NDP C 1 1001 903 NDP NDP . H 2 NDP D 1 1001 903 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 2 58.76 -31.059 32.95 1 72.4 ? PA NDP 1001 B 1 HETATM 2 O O1A NDP . . . F 2 60.043 -30.353 33.047 1 71.88 ? O1A NDP 1001 B 1 HETATM 3 O O2A NDP . . . F 2 58.578 -31.623 31.594 1 71.23 ? O2A NDP 1001 B 1 HETATM 4 O O5B NDP . . . F 2 57.512 -30.088 33.247 1 72.09 ? O5B NDP 1001 B 1 HETATM 5 C C5B NDP . . . F 2 57.632 -28.696 33.041 1 71.25 ? C5B NDP 1001 B 1 HETATM 6 C C4B NDP . . . F 2 57.105 -28.187 31.693 1 70.26 ? C4B NDP 1001 B 1 HETATM 7 O O4B NDP . . . F 2 57.925 -28.518 30.591 1 70.38 ? O4B NDP 1001 B 1 HETATM 8 C C3B NDP . . . F 2 55.735 -28.694 31.292 1 70.11 ? C3B NDP 1001 B 1 HETATM 9 O O3B NDP . . . F 2 54.983 -27.551 30.939 1 69.64 ? O3B NDP 1001 B 1 HETATM 10 C C2B NDP . . . F 2 55.989 -29.517 30.045 1 69.36 ? C2B NDP 1001 B 1 HETATM 11 O O2B NDP . . . F 2 54.857 -29.535 29.221 1 68.16 ? O2B NDP 1001 B 1 HETATM 12 C C1B NDP . . . F 2 57.091 -28.688 29.457 1 69.53 ? C1B NDP 1001 B 1 HETATM 13 N N9A NDP . . . F 2 57.831 -29.238 28.303 1 69.45 ? N9A NDP 1001 B 1 HETATM 14 C C8A NDP . . . F 2 58.17 -30.537 27.992 1 69.51 ? C8A NDP 1001 B 1 HETATM 15 N N7A NDP . . . F 2 58.88 -30.503 26.83 1 68.19 ? N7A NDP 1001 B 1 HETATM 16 C C5A NDP . . . F 2 59.004 -29.218 26.41 1 67.34 ? C5A NDP 1001 B 1 HETATM 17 C C6A NDP . . . F 2 59.611 -28.595 25.315 1 67.34 ? C6A NDP 1001 B 1 HETATM 18 N N6A NDP . . . F 2 60.122 -29.293 24.319 1 68.94 ? N6A NDP 1001 B 1 HETATM 19 N N1A NDP . . . F 2 59.571 -27.23 25.152 1 67.14 ? N1A NDP 1001 B 1 HETATM 20 C C2A NDP . . . F 2 58.905 -26.478 26.093 1 67.1 ? C2A NDP 1001 B 1 HETATM 21 N N3A NDP . . . F 2 58.295 -27.087 27.169 1 67.08 ? N3A NDP 1001 B 1 HETATM 22 C C4A NDP . . . F 2 58.348 -28.427 27.331 1 67.82 ? C4A NDP 1001 B 1 HETATM 23 O O3 NDP . . . F 2 58.806 -32.159 34.13 1 77.31 ? O3 NDP 1001 B 1 HETATM 24 P PN NDP . . . F 2 57.752 -32.373 35.354 1 82.1 ? PN NDP 1001 B 1 HETATM 25 O O1N NDP . . . F 2 58.203 -33.6 36.091 1 81.26 ? O1N NDP 1001 B 1 HETATM 26 O O2N NDP . . . F 2 56.396 -32.361 34.736 1 80.61 ? O2N NDP 1001 B 1 HETATM 27 O O5D NDP . . . F 2 57.93 -31.06 36.331 1 81.16 ? O5D NDP 1001 B 1 HETATM 28 C C5D NDP . . . F 2 58.232 -31.1 37.722 1 82.34 ? C5D NDP 1001 B 1 HETATM 29 C C4D NDP . . . F 2 59.594 -30.437 37.966 1 85.48 ? C4D NDP 1001 B 1 HETATM 30 O O4D NDP . . . F 2 59.553 -29.017 38.202 1 86.38 ? O4D NDP 1001 B 1 HETATM 31 C C3D NDP . . . F 2 60.363 -31.034 39.138 1 86.73 ? C3D NDP 1001 B 1 HETATM 32 O O3D NDP . . . F 2 61.456 -31.746 38.622 1 87.72 ? O3D NDP 1001 B 1 HETATM 33 C C2D NDP . . . F 2 60.811 -29.821 39.978 1 87 ? C2D NDP 1001 B 1 HETATM 34 O O2D NDP . . . F 2 62.106 -29.931 40.552 1 87.15 ? O2D NDP 1001 B 1 HETATM 35 C C1D NDP . . . F 2 60.622 -28.607 39.063 1 85.89 ? C1D NDP 1001 B 1 HETATM 36 N N1N NDP . . . F 2 60.39 -27.32 39.81 1 85.23 ? N1N NDP 1001 B 1 HETATM 37 C C2N NDP . . . F 2 61.395 -26.36 39.94 1 82.79 ? C2N NDP 1001 B 1 HETATM 38 C C3N NDP . . . F 2 61.193 -25.104 40.563 1 78.56 ? C3N NDP 1001 B 1 HETATM 39 C C7N NDP . . . F 2 62.285 -24.111 40.627 1 74.22 ? C7N NDP 1001 B 1 HETATM 40 O O7N NDP . . . F 2 61.939 -22.792 40.305 1 71.96 ? O7N NDP 1001 B 1 HETATM 41 N N7N NDP . . . F 2 63.504 -24.485 40.93 1 71.37 ? N7N NDP 1001 B 1 HETATM 42 C C4N NDP . . . F 2 59.861 -24.679 41.145 1 80.94 ? C4N NDP 1001 B 1 HETATM 43 C C5N NDP . . . F 2 58.846 -25.779 40.969 1 85.11 ? C5N NDP 1001 B 1 HETATM 44 C C6N NDP . . . F 2 59.141 -27.01 40.323 1 85.92 ? C6N NDP 1001 B 1 HETATM 45 P P2B NDP . . . F 2 53.812 -30.719 29.5 1 65.77 ? P2B NDP 1001 B 1 HETATM 46 O O1X NDP . . . F 2 54.613 -31.697 30.315 1 64.76 ? O1X NDP 1001 B 1 HETATM 47 O O2X NDP . . . F 2 52.595 -30.269 30.285 1 64.11 ? O2X NDP 1001 B 1 HETATM 48 O O3X NDP . . . F 2 53.399 -31.287 28.164 1 66.36 ? O3X NDP 1001 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #