data_4GOL
#
_model_server_result.job_id            xJ5FbJuNTFmfzuMhw7fPng 
_model_server_result.datetime_utc      '2025-03-10 20:22:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4gol 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4GOL 
#
_exptl.entry_id    4GOL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.387 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4GOL 
_cell.length_a            160.97 
_cell.length_b            160.97 
_cell.length_c            96.029 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4GOL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,D,G 2 1 
B,E,H 3 1 
C,F,I 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C15 H23 N7 O5' 
_chem_comp.formula_weight    381.387 
_chem_comp.id                SA8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5'-[N-[(3S)-3-AMINO-3-CARBOXYPROPYL]-N-METHYLAMINO]-5'-DEOXYADENOSINE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SA8 sing 277 n n 
N HN1 SA8 sing 278 n n 
N HN2 SA8 sing 279 n n 
CA C SA8 sing 280 n n 
CA CB SA8 sing 281 n n 
CA HA SA8 sing 282 n n 
C O SA8 sing 283 n n 
C OXT SA8 doub 284 n n 
O HO SA8 sing 285 n n 
CB CG SA8 sing 286 n n 
CB HB1 SA8 sing 287 n n 
CB HB2 SA8 sing 288 n n 
CG ND SA8 sing 289 n n 
CG HG1 SA8 sing 290 n n 
CG HG2 SA8 sing 291 n n 
ND CE SA8 sing 292 n n 
ND C5' SA8 sing 293 n n 
CE HE1 SA8 sing 294 n n 
CE HE2 SA8 sing 295 n n 
CE HE3 SA8 sing 296 n n 
C5' C4' SA8 sing 297 n n 
C5' "H5'1" SA8 sing 298 n n 
C5' "H5'2" SA8 sing 299 n n 
C4' O4' SA8 sing 300 n n 
C4' C3' SA8 sing 301 n n 
C4' H4' SA8 sing 302 n n 
O4' C1' SA8 sing 303 n n 
C3' O3' SA8 sing 304 n n 
C3' C2' SA8 sing 305 n n 
C3' H3' SA8 sing 306 n n 
O3' H2 SA8 sing 307 n n 
C2' O2' SA8 sing 308 n n 
C2' C1' SA8 sing 309 n n 
C2' H2' SA8 sing 310 n n 
O2' H1 SA8 sing 311 n n 
C1' N9 SA8 sing 312 n n 
C1' H1' SA8 sing 313 n n 
N9 C8 SA8 sing 314 n y 
N9 C4 SA8 sing 315 n y 
C8 N7 SA8 doub 316 n y 
C8 H8 SA8 sing 317 n n 
N7 C5 SA8 sing 318 n y 
C5 C6 SA8 sing 319 n y 
C5 C4 SA8 doub 320 n y 
C6 N6 SA8 sing 321 n n 
C6 N1 SA8 doub 322 n y 
N6 HN61 SA8 sing 323 n n 
N6 HN62 SA8 sing 324 n n 
N1 C2 SA8 sing 325 n y 
C2 N3 SA8 doub 326 n y 
C2 H3 SA8 sing 327 n n 
N3 C4 SA8 sing 328 n y 
#
_atom_sites.entry_id                     4GOL 
_atom_sites.fract_transf_matrix[1][1]    0.006212 
_atom_sites.fract_transf_matrix[1][2]    0.003587 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007173 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SA8 D 1 301 1 SA8 SA8 . 
E 2 SA8 E 1 301 1 SA8 SA8 . 
F 2 SA8 F 1 301 1 SA8 SA8 . 
G 3 HOH D 1 401 1 HOH HOH . 
G 3 HOH D 2 402 2 HOH HOH . 
G 3 HOH D 3 403 3 HOH HOH . 
G 3 HOH D 4 404 4 HOH HOH . 
G 3 HOH D 5 405 8 HOH HOH . 
G 3 HOH D 6 406 9 HOH HOH . 
G 3 HOH D 7 407 10 HOH HOH . 
G 3 HOH D 8 408 13 HOH HOH . 
G 3 HOH D 9 409 15 HOH HOH . 
G 3 HOH D 10 410 16 HOH HOH . 
H 3 HOH E 1 401 5 HOH HOH . 
H 3 HOH E 2 402 6 HOH HOH . 
H 3 HOH E 3 403 7 HOH HOH . 
H 3 HOH E 4 404 11 HOH HOH . 
H 3 HOH E 5 405 12 HOH HOH . 
H 3 HOH E 6 406 18 HOH HOH . 
I 3 HOH F 1 401 14 HOH HOH . 
I 3 HOH F 2 402 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SA8 . . . D 2 69.313 2.145 60.861 1 56.79 ? N SA8 301 D 1 
HETATM 2 C CA SA8 . . . D 2 69.095 3.49 61.374 1 56.71 ? CA SA8 301 D 1 
HETATM 3 C C SA8 . . . D 2 70.177 3.922 62.372 1 56.83 ? C SA8 301 D 1 
HETATM 4 O O SA8 . . . D 2 70.366 5.17 62.633 1 57.05 ? O SA8 301 D 1 
HETATM 5 O OXT SA8 . . . D 2 70.889 3.047 62.96 1 56.62 ? OXT SA8 301 D 1 
HETATM 6 C CB SA8 . . . D 2 67.692 3.601 61.945 1 56.52 ? CB SA8 301 D 1 
HETATM 7 C CG SA8 . . . D 2 67.3 2.747 63.182 1 55.24 ? CG SA8 301 D 1 
HETATM 8 N ND SA8 . . . D 2 66.079 3.094 63.974 1 56.45 ? ND SA8 301 D 1 
HETATM 9 C CE SA8 . . . D 2 66.041 4.545 64.153 1 59.56 ? CE SA8 301 D 1 
HETATM 10 C C5' SA8 . . . D 2 66.264 2.453 65.295 1 51.86 ? C5' SA8 301 D 1 
HETATM 11 C C4' SA8 . . . D 2 65.155 2.484 66.212 1 52.26 ? C4' SA8 301 D 1 
HETATM 12 O O4' SA8 . . . D 2 65.194 1.308 67.058 1 51.43 ? O4' SA8 301 D 1 
HETATM 13 C C3' SA8 . . . D 2 65.16 3.671 67.131 1 52.51 ? C3' SA8 301 D 1 
HETATM 14 O O3' SA8 . . . D 2 63.949 4.291 67.083 1 49.66 ? O3' SA8 301 D 1 
HETATM 15 C C2' SA8 . . . D 2 65.304 3.164 68.499 1 53.12 ? C2' SA8 301 D 1 
HETATM 16 O O2' SA8 . . . D 2 64.502 3.916 69.344 1 52.25 ? O2' SA8 301 D 1 
HETATM 17 C C1' SA8 . . . D 2 64.858 1.729 68.353 1 51.75 ? C1' SA8 301 D 1 
HETATM 18 N N9 SA8 . . . D 2 65.428 0.723 69.271 1 52.87 ? N9 SA8 301 D 1 
HETATM 19 C C8 SA8 . . . D 2 66.653 0.704 69.854 1 52.22 ? C8 SA8 301 D 1 
HETATM 20 N N7 SA8 . . . D 2 66.757 -0.4 70.617 1 48.43 ? N7 SA8 301 D 1 
HETATM 21 C C5 SA8 . . . D 2 65.61 -1.099 70.499 1 50.73 ? C5 SA8 301 D 1 
HETATM 22 C C6 SA8 . . . D 2 65.158 -2.3 71.048 1 48.69 ? C6 SA8 301 D 1 
HETATM 23 N N6 SA8 . . . D 2 66.011 -3.034 71.906 1 46.87 ? N6 SA8 301 D 1 
HETATM 24 N N1 SA8 . . . D 2 63.923 -2.72 70.726 1 48.19 ? N1 SA8 301 D 1 
HETATM 25 C C2 SA8 . . . D 2 63.101 -2.005 69.918 1 47.71 ? C2 SA8 301 D 1 
HETATM 26 N N3 SA8 . . . D 2 63.471 -0.846 69.39 1 46.71 ? N3 SA8 301 D 1 
HETATM 27 C C4 SA8 . . . D 2 64.727 -0.38 69.641 1 52.39 ? C4 SA8 301 D 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#