data_4GP6 # _model_server_result.job_id Pc-KnR0c3-0k59xdZBs8dw _model_server_result.datetime_utc '2024-11-02 19:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 4GP6 # _exptl.entry_id 4GP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GP6 _cell.length_a 43.69 _cell.length_b 71.56 _cell.length_c 118.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+5/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 109.225 0 59.305 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 22 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 C O1B ADP . A ADP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc6 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc7 B OG SER 23 B SER 22 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 E O1B ADP . B ADP 1001 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc9 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc10 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc11 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc12 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GP6 _atom_sites.fract_transf_matrix[1][1] 0.022889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1001 1001 ADP ADP . D 3 MG A 1 1002 1002 MG MG . E 2 ADP B 1 1001 1001 ADP ADP . F 3 MG B 1 1002 1002 MG MG . G 4 HOH A 1 1101 5 HOH HOH . G 4 HOH A 2 1102 6 HOH HOH . G 4 HOH A 3 1103 7 HOH HOH . G 4 HOH A 4 1104 9 HOH HOH . G 4 HOH A 5 1105 10 HOH HOH . G 4 HOH A 6 1106 13 HOH HOH . G 4 HOH A 7 1107 14 HOH HOH . G 4 HOH A 8 1108 15 HOH HOH . G 4 HOH A 9 1109 17 HOH HOH . G 4 HOH A 10 1110 21 HOH HOH . G 4 HOH A 11 1111 23 HOH HOH . G 4 HOH A 12 1112 24 HOH HOH . G 4 HOH A 13 1113 26 HOH HOH . G 4 HOH A 14 1114 27 HOH HOH . G 4 HOH A 15 1115 30 HOH HOH . G 4 HOH A 16 1116 31 HOH HOH . G 4 HOH A 17 1117 33 HOH HOH . G 4 HOH A 18 1118 37 HOH HOH . G 4 HOH A 19 1119 38 HOH HOH . G 4 HOH A 20 1120 39 HOH HOH . G 4 HOH A 21 1121 42 HOH HOH . G 4 HOH A 22 1122 43 HOH HOH . G 4 HOH A 23 1123 44 HOH HOH . G 4 HOH A 24 1124 45 HOH HOH . G 4 HOH A 25 1125 48 HOH HOH . G 4 HOH A 26 1126 50 HOH HOH . G 4 HOH A 27 1127 51 HOH HOH . G 4 HOH A 28 1128 52 HOH HOH . G 4 HOH A 29 1129 57 HOH HOH . G 4 HOH A 30 1130 60 HOH HOH . G 4 HOH A 31 1131 61 HOH HOH . G 4 HOH A 32 1132 64 HOH HOH . G 4 HOH A 33 1133 65 HOH HOH . G 4 HOH A 34 1134 67 HOH HOH . G 4 HOH A 35 1135 68 HOH HOH . G 4 HOH A 36 1136 69 HOH HOH . G 4 HOH A 37 1137 70 HOH HOH . G 4 HOH A 38 1138 73 HOH HOH . G 4 HOH A 39 1139 74 HOH HOH . G 4 HOH A 40 1140 76 HOH HOH . G 4 HOH A 41 1141 81 HOH HOH . G 4 HOH A 42 1142 84 HOH HOH . G 4 HOH A 43 1143 88 HOH HOH . G 4 HOH A 44 1144 89 HOH HOH . G 4 HOH A 45 1145 91 HOH HOH . G 4 HOH A 46 1146 93 HOH HOH . G 4 HOH A 47 1147 95 HOH HOH . G 4 HOH A 48 1148 96 HOH HOH . G 4 HOH A 49 1149 97 HOH HOH . G 4 HOH A 50 1150 99 HOH HOH . G 4 HOH A 51 1151 101 HOH HOH . G 4 HOH A 52 1152 102 HOH HOH . G 4 HOH A 53 1153 103 HOH HOH . G 4 HOH A 54 1154 104 HOH HOH . G 4 HOH A 55 1155 105 HOH HOH . G 4 HOH A 56 1156 107 HOH HOH . G 4 HOH A 57 1157 112 HOH HOH . G 4 HOH A 58 1158 113 HOH HOH . G 4 HOH A 59 1159 114 HOH HOH . G 4 HOH A 60 1160 116 HOH HOH . G 4 HOH A 61 1161 117 HOH HOH . G 4 HOH A 62 1162 118 HOH HOH . G 4 HOH A 63 1163 119 HOH HOH . G 4 HOH A 64 1164 121 HOH HOH . G 4 HOH A 65 1165 123 HOH HOH . G 4 HOH A 66 1166 125 HOH HOH . G 4 HOH A 67 1167 126 HOH HOH . G 4 HOH A 68 1168 127 HOH HOH . G 4 HOH A 69 1169 131 HOH HOH . G 4 HOH A 70 1170 132 HOH HOH . G 4 HOH A 71 1171 133 HOH HOH . G 4 HOH A 72 1172 137 HOH HOH . G 4 HOH A 73 1173 138 HOH HOH . G 4 HOH A 74 1174 141 HOH HOH . G 4 HOH A 75 1175 143 HOH HOH . G 4 HOH A 76 1176 145 HOH HOH . G 4 HOH A 77 1177 148 HOH HOH . G 4 HOH A 78 1178 149 HOH HOH . G 4 HOH A 79 1179 150 HOH HOH . G 4 HOH A 80 1180 152 HOH HOH . G 4 HOH A 81 1181 153 HOH HOH . G 4 HOH A 82 1182 154 HOH HOH . G 4 HOH A 83 1183 156 HOH HOH . G 4 HOH A 84 1184 163 HOH HOH . G 4 HOH A 85 1185 167 HOH HOH . G 4 HOH A 86 1186 168 HOH HOH . G 4 HOH A 87 1187 169 HOH HOH . G 4 HOH A 88 1188 170 HOH HOH . G 4 HOH A 89 1189 173 HOH HOH . G 4 HOH A 90 1190 175 HOH HOH . G 4 HOH A 91 1191 176 HOH HOH . G 4 HOH A 92 1192 179 HOH HOH . G 4 HOH A 93 1193 180 HOH HOH . G 4 HOH A 94 1194 182 HOH HOH . G 4 HOH A 95 1195 185 HOH HOH . G 4 HOH A 96 1196 186 HOH HOH . G 4 HOH A 97 1197 188 HOH HOH . G 4 HOH A 98 1198 190 HOH HOH . G 4 HOH A 99 1199 191 HOH HOH . G 4 HOH A 100 1200 192 HOH HOH . G 4 HOH A 101 1201 193 HOH HOH . G 4 HOH A 102 1202 194 HOH HOH . G 4 HOH A 103 1203 195 HOH HOH . G 4 HOH A 104 1204 196 HOH HOH . G 4 HOH A 105 1205 197 HOH HOH . G 4 HOH A 106 1206 202 HOH HOH . G 4 HOH A 107 1207 203 HOH HOH . G 4 HOH A 108 1208 204 HOH HOH . G 4 HOH A 109 1209 205 HOH HOH . G 4 HOH A 110 1210 209 HOH HOH . G 4 HOH A 111 1211 212 HOH HOH . G 4 HOH A 112 1212 217 HOH HOH . G 4 HOH A 113 1213 218 HOH HOH . G 4 HOH A 114 1214 219 HOH HOH . G 4 HOH A 115 1215 223 HOH HOH . G 4 HOH A 116 1216 224 HOH HOH . G 4 HOH A 117 1217 225 HOH HOH . G 4 HOH A 118 1218 227 HOH HOH . G 4 HOH A 119 1219 229 HOH HOH . G 4 HOH A 120 1220 232 HOH HOH . H 4 HOH B 1 1101 1 HOH HOH . H 4 HOH B 2 1102 2 HOH HOH . H 4 HOH B 3 1103 3 HOH HOH . H 4 HOH B 4 1104 4 HOH HOH . H 4 HOH B 5 1105 8 HOH HOH . H 4 HOH B 6 1106 11 HOH HOH . H 4 HOH B 7 1107 12 HOH HOH . H 4 HOH B 8 1108 16 HOH HOH . H 4 HOH B 9 1109 18 HOH HOH . H 4 HOH B 10 1110 19 HOH HOH . H 4 HOH B 11 1111 20 HOH HOH . H 4 HOH B 12 1112 22 HOH HOH . H 4 HOH B 13 1113 25 HOH HOH . H 4 HOH B 14 1114 28 HOH HOH . H 4 HOH B 15 1115 29 HOH HOH . H 4 HOH B 16 1116 32 HOH HOH . H 4 HOH B 17 1117 34 HOH HOH . H 4 HOH B 18 1118 35 HOH HOH . H 4 HOH B 19 1119 36 HOH HOH . H 4 HOH B 20 1120 40 HOH HOH . H 4 HOH B 21 1121 41 HOH HOH . H 4 HOH B 22 1122 46 HOH HOH . H 4 HOH B 23 1123 47 HOH HOH . H 4 HOH B 24 1124 49 HOH HOH . H 4 HOH B 25 1125 53 HOH HOH . H 4 HOH B 26 1126 54 HOH HOH . H 4 HOH B 27 1127 55 HOH HOH . H 4 HOH B 28 1128 56 HOH HOH . H 4 HOH B 29 1129 58 HOH HOH . H 4 HOH B 30 1130 59 HOH HOH . H 4 HOH B 31 1131 62 HOH HOH . H 4 HOH B 32 1132 63 HOH HOH . H 4 HOH B 33 1133 66 HOH HOH . H 4 HOH B 34 1134 71 HOH HOH . H 4 HOH B 35 1135 72 HOH HOH . H 4 HOH B 36 1136 75 HOH HOH . H 4 HOH B 37 1137 77 HOH HOH . H 4 HOH B 38 1138 78 HOH HOH . H 4 HOH B 39 1139 79 HOH HOH . H 4 HOH B 40 1140 80 HOH HOH . H 4 HOH B 41 1141 82 HOH HOH . H 4 HOH B 42 1142 83 HOH HOH . H 4 HOH B 43 1143 85 HOH HOH . H 4 HOH B 44 1144 86 HOH HOH . H 4 HOH B 45 1145 87 HOH HOH . H 4 HOH B 46 1146 90 HOH HOH . H 4 HOH B 47 1147 92 HOH HOH . H 4 HOH B 48 1148 94 HOH HOH . H 4 HOH B 49 1149 98 HOH HOH . H 4 HOH B 50 1150 100 HOH HOH . H 4 HOH B 51 1151 106 HOH HOH . H 4 HOH B 52 1152 108 HOH HOH . H 4 HOH B 53 1153 109 HOH HOH . H 4 HOH B 54 1154 110 HOH HOH . H 4 HOH B 55 1155 111 HOH HOH . H 4 HOH B 56 1156 115 HOH HOH . H 4 HOH B 57 1157 120 HOH HOH . H 4 HOH B 58 1158 122 HOH HOH . H 4 HOH B 59 1159 124 HOH HOH . H 4 HOH B 60 1160 128 HOH HOH . H 4 HOH B 61 1161 129 HOH HOH . H 4 HOH B 62 1162 130 HOH HOH . H 4 HOH B 63 1163 134 HOH HOH . H 4 HOH B 64 1164 135 HOH HOH . H 4 HOH B 65 1165 136 HOH HOH . H 4 HOH B 66 1166 139 HOH HOH . H 4 HOH B 67 1167 140 HOH HOH . H 4 HOH B 68 1168 142 HOH HOH . H 4 HOH B 69 1169 144 HOH HOH . H 4 HOH B 70 1170 146 HOH HOH . H 4 HOH B 71 1171 147 HOH HOH . H 4 HOH B 72 1172 151 HOH HOH . H 4 HOH B 73 1173 155 HOH HOH . H 4 HOH B 74 1174 157 HOH HOH . H 4 HOH B 75 1175 158 HOH HOH . H 4 HOH B 76 1176 159 HOH HOH . H 4 HOH B 77 1177 160 HOH HOH . H 4 HOH B 78 1178 161 HOH HOH . H 4 HOH B 79 1179 162 HOH HOH . H 4 HOH B 80 1180 164 HOH HOH . H 4 HOH B 81 1181 165 HOH HOH . H 4 HOH B 82 1182 166 HOH HOH . H 4 HOH B 83 1183 171 HOH HOH . H 4 HOH B 84 1184 172 HOH HOH . H 4 HOH B 85 1185 174 HOH HOH . H 4 HOH B 86 1186 177 HOH HOH . H 4 HOH B 87 1187 178 HOH HOH . H 4 HOH B 88 1188 181 HOH HOH . H 4 HOH B 89 1189 183 HOH HOH . H 4 HOH B 90 1190 184 HOH HOH . H 4 HOH B 91 1191 187 HOH HOH . H 4 HOH B 92 1192 189 HOH HOH . H 4 HOH B 93 1193 198 HOH HOH . H 4 HOH B 94 1194 199 HOH HOH . H 4 HOH B 95 1195 200 HOH HOH . H 4 HOH B 96 1196 201 HOH HOH . H 4 HOH B 97 1197 206 HOH HOH . H 4 HOH B 98 1198 207 HOH HOH . H 4 HOH B 99 1199 208 HOH HOH . H 4 HOH B 100 1200 210 HOH HOH . H 4 HOH B 101 1201 211 HOH HOH . H 4 HOH B 102 1202 213 HOH HOH . H 4 HOH B 103 1203 214 HOH HOH . H 4 HOH B 104 1204 215 HOH HOH . H 4 HOH B 105 1205 216 HOH HOH . H 4 HOH B 106 1206 220 HOH HOH . H 4 HOH B 107 1207 221 HOH HOH . H 4 HOH B 108 1208 222 HOH HOH . H 4 HOH B 109 1209 226 HOH HOH . H 4 HOH B 110 1210 228 HOH HOH . H 4 HOH B 111 1211 230 HOH HOH . H 4 HOH B 112 1212 231 HOH HOH . H 4 HOH B 113 1213 233 HOH HOH . H 4 HOH B 114 1214 234 HOH HOH . H 4 HOH B 115 1215 235 HOH HOH . H 4 HOH B 116 1216 236 HOH HOH . H 4 HOH B 117 1217 237 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.544 _atom_site.Cartn_y 5.942 _atom_site.Cartn_z 165.754 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #