data_4GP7 # _model_server_result.job_id nZG90MHBIypMBy0eFTNz7g _model_server_result.datetime_utc '2024-11-02 20:16:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 4GP7 # _exptl.entry_id 4GP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GP7 _cell.length_a 45.306 _cell.length_b 66.781 _cell.length_c 119.546 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+3/2,-y+1,z+1/2 -1 0 0 0 -1 0 0 0 1 67.959 66.781 59.773 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 1 A SER 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LYS 3 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C LEU 44 A LEU 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 45 A MSE 44 1_555 A N SER 46 A SER 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLU 93 A GLU 92 1_555 A N MSE 94 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 94 A MSE 93 1_555 A N ALA 95 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C GLN 137 A GLN 136 1_555 A N MSE 138 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 138 A MSE 137 1_555 A N LYS 139 A LYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C SER 1 B SER 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 B C MSE 2 B MSE 1 1_555 B N LYS 3 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C LEU 44 B LEU 43 1_555 B N MSE 45 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 45 B MSE 44 1_555 B N SER 46 B SER 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C GLU 93 B GLU 92 1_555 B N MSE 94 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C MSE 94 B MSE 93 1_555 B N ALA 95 B ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B C GLN 137 B GLN 136 1_555 B N MSE 138 B MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 138 B MSE 137 1_555 B N LYS 139 B LYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 F O3G ATP . B ATP 1001 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc2 C O3G ATP . A ATP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 C O1B ATP . A ATP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 A OG SER 23 A SER 22 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 F O1B ATP . B ATP 1001 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 B OG SER 23 B SER 22 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GP7 _atom_sites.fract_transf_matrix[1][1] 0.022072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 1001 1001 ATP ATP . D 3 MG A 1 1002 1002 MG MG . E 4 CIT A 1 1003 1 CIT CIT . F 2 ATP B 1 1001 1001 ATP ATP . G 3 MG B 1 1002 1002 MG MG . H 5 NA B 1 1003 2 NA NA . I 6 HOH A 1 1101 2 HOH HOH . I 6 HOH A 2 1102 7 HOH HOH . I 6 HOH A 3 1103 8 HOH HOH . I 6 HOH A 4 1104 9 HOH HOH . I 6 HOH A 5 1105 10 HOH HOH . I 6 HOH A 6 1106 11 HOH HOH . I 6 HOH A 7 1107 14 HOH HOH . I 6 HOH A 8 1108 16 HOH HOH . I 6 HOH A 9 1109 18 HOH HOH . I 6 HOH A 10 1110 20 HOH HOH . I 6 HOH A 11 1111 21 HOH HOH . I 6 HOH A 12 1112 22 HOH HOH . I 6 HOH A 13 1113 23 HOH HOH . I 6 HOH A 14 1114 25 HOH HOH . I 6 HOH A 15 1115 28 HOH HOH . I 6 HOH A 16 1116 39 HOH HOH . I 6 HOH A 17 1117 40 HOH HOH . I 6 HOH A 18 1118 44 HOH HOH . I 6 HOH A 19 1119 45 HOH HOH . I 6 HOH A 20 1120 48 HOH HOH . I 6 HOH A 21 1121 51 HOH HOH . I 6 HOH A 22 1122 52 HOH HOH . I 6 HOH A 23 1123 56 HOH HOH . I 6 HOH A 24 1124 57 HOH HOH . I 6 HOH A 25 1125 58 HOH HOH . I 6 HOH A 26 1126 61 HOH HOH . I 6 HOH A 27 1127 63 HOH HOH . I 6 HOH A 28 1128 64 HOH HOH . I 6 HOH A 29 1129 65 HOH HOH . I 6 HOH A 30 1130 66 HOH HOH . I 6 HOH A 31 1131 67 HOH HOH . I 6 HOH A 32 1132 68 HOH HOH . I 6 HOH A 33 1133 69 HOH HOH . I 6 HOH A 34 1134 70 HOH HOH . I 6 HOH A 35 1135 72 HOH HOH . I 6 HOH A 36 1136 75 HOH HOH . I 6 HOH A 37 1137 78 HOH HOH . I 6 HOH A 38 1138 80 HOH HOH . I 6 HOH A 39 1139 81 HOH HOH . I 6 HOH A 40 1140 82 HOH HOH . I 6 HOH A 41 1141 85 HOH HOH . I 6 HOH A 42 1142 86 HOH HOH . I 6 HOH A 43 1143 88 HOH HOH . I 6 HOH A 44 1144 90 HOH HOH . I 6 HOH A 45 1145 91 HOH HOH . I 6 HOH A 46 1146 93 HOH HOH . I 6 HOH A 47 1147 94 HOH HOH . I 6 HOH A 48 1148 96 HOH HOH . I 6 HOH A 49 1149 97 HOH HOH . I 6 HOH A 50 1150 98 HOH HOH . I 6 HOH A 51 1151 101 HOH HOH . I 6 HOH A 52 1152 102 HOH HOH . I 6 HOH A 53 1153 103 HOH HOH . I 6 HOH A 54 1154 108 HOH HOH . I 6 HOH A 55 1155 111 HOH HOH . I 6 HOH A 56 1156 112 HOH HOH . I 6 HOH A 57 1157 113 HOH HOH . I 6 HOH A 58 1158 114 HOH HOH . I 6 HOH A 59 1159 117 HOH HOH . I 6 HOH A 60 1160 120 HOH HOH . I 6 HOH A 61 1161 126 HOH HOH . I 6 HOH A 62 1162 127 HOH HOH . I 6 HOH A 63 1163 128 HOH HOH . I 6 HOH A 64 1164 131 HOH HOH . I 6 HOH A 65 1165 133 HOH HOH . I 6 HOH A 66 1166 134 HOH HOH . I 6 HOH A 67 1167 136 HOH HOH . I 6 HOH A 68 1168 142 HOH HOH . I 6 HOH A 69 1169 143 HOH HOH . I 6 HOH A 70 1170 145 HOH HOH . I 6 HOH A 71 1171 146 HOH HOH . I 6 HOH A 72 1172 147 HOH HOH . I 6 HOH A 73 1173 152 HOH HOH . I 6 HOH A 74 1174 154 HOH HOH . I 6 HOH A 75 1175 157 HOH HOH . I 6 HOH A 76 1176 159 HOH HOH . I 6 HOH A 77 1177 161 HOH HOH . I 6 HOH A 78 1178 164 HOH HOH . I 6 HOH A 79 1179 166 HOH HOH . I 6 HOH A 80 1180 167 HOH HOH . I 6 HOH A 81 1181 168 HOH HOH . I 6 HOH A 82 1182 169 HOH HOH . I 6 HOH A 83 1183 171 HOH HOH . I 6 HOH A 84 1184 173 HOH HOH . I 6 HOH A 85 1185 178 HOH HOH . I 6 HOH A 86 1186 180 HOH HOH . I 6 HOH A 87 1187 182 HOH HOH . I 6 HOH A 88 1188 184 HOH HOH . I 6 HOH A 89 1189 185 HOH HOH . I 6 HOH A 90 1190 187 HOH HOH . J 6 HOH B 1 1101 1 HOH HOH . J 6 HOH B 2 1102 3 HOH HOH . J 6 HOH B 3 1103 4 HOH HOH . J 6 HOH B 4 1104 5 HOH HOH . J 6 HOH B 5 1105 6 HOH HOH . J 6 HOH B 6 1106 12 HOH HOH . J 6 HOH B 7 1107 13 HOH HOH . J 6 HOH B 8 1108 15 HOH HOH . J 6 HOH B 9 1109 17 HOH HOH . J 6 HOH B 10 1110 19 HOH HOH . J 6 HOH B 11 1111 24 HOH HOH . J 6 HOH B 12 1112 26 HOH HOH . J 6 HOH B 13 1113 27 HOH HOH . J 6 HOH B 14 1114 29 HOH HOH . J 6 HOH B 15 1115 30 HOH HOH . J 6 HOH B 16 1116 31 HOH HOH . J 6 HOH B 17 1117 32 HOH HOH . J 6 HOH B 18 1118 33 HOH HOH . J 6 HOH B 19 1119 34 HOH HOH . J 6 HOH B 20 1120 35 HOH HOH . J 6 HOH B 21 1121 36 HOH HOH . J 6 HOH B 22 1122 37 HOH HOH . J 6 HOH B 23 1123 38 HOH HOH . J 6 HOH B 24 1124 41 HOH HOH . J 6 HOH B 25 1125 42 HOH HOH . J 6 HOH B 26 1126 43 HOH HOH . J 6 HOH B 27 1127 46 HOH HOH . J 6 HOH B 28 1128 47 HOH HOH . J 6 HOH B 29 1129 49 HOH HOH . J 6 HOH B 30 1130 50 HOH HOH . J 6 HOH B 31 1131 53 HOH HOH . J 6 HOH B 32 1132 54 HOH HOH . J 6 HOH B 33 1133 55 HOH HOH . J 6 HOH B 34 1134 59 HOH HOH . J 6 HOH B 35 1135 60 HOH HOH . J 6 HOH B 36 1136 62 HOH HOH . J 6 HOH B 37 1137 71 HOH HOH . J 6 HOH B 38 1138 73 HOH HOH . J 6 HOH B 39 1139 74 HOH HOH . J 6 HOH B 40 1140 76 HOH HOH . J 6 HOH B 41 1141 77 HOH HOH . J 6 HOH B 42 1142 79 HOH HOH . J 6 HOH B 43 1143 83 HOH HOH . J 6 HOH B 44 1144 84 HOH HOH . J 6 HOH B 45 1145 87 HOH HOH . J 6 HOH B 46 1146 89 HOH HOH . J 6 HOH B 47 1147 92 HOH HOH . J 6 HOH B 48 1148 95 HOH HOH . J 6 HOH B 49 1149 99 HOH HOH . J 6 HOH B 50 1150 100 HOH HOH . J 6 HOH B 51 1151 104 HOH HOH . J 6 HOH B 52 1152 105 HOH HOH . J 6 HOH B 53 1153 106 HOH HOH . J 6 HOH B 54 1154 107 HOH HOH . J 6 HOH B 55 1155 109 HOH HOH . J 6 HOH B 56 1156 110 HOH HOH . J 6 HOH B 57 1157 115 HOH HOH . J 6 HOH B 58 1158 116 HOH HOH . J 6 HOH B 59 1159 118 HOH HOH . J 6 HOH B 60 1160 119 HOH HOH . J 6 HOH B 61 1161 121 HOH HOH . J 6 HOH B 62 1162 122 HOH HOH . J 6 HOH B 63 1163 123 HOH HOH . J 6 HOH B 64 1164 124 HOH HOH . J 6 HOH B 65 1165 125 HOH HOH . J 6 HOH B 66 1166 129 HOH HOH . J 6 HOH B 67 1167 130 HOH HOH . J 6 HOH B 68 1168 132 HOH HOH . J 6 HOH B 69 1169 135 HOH HOH . J 6 HOH B 70 1170 137 HOH HOH . J 6 HOH B 71 1171 138 HOH HOH . J 6 HOH B 72 1172 139 HOH HOH . J 6 HOH B 73 1173 140 HOH HOH . J 6 HOH B 74 1174 141 HOH HOH . J 6 HOH B 75 1175 144 HOH HOH . J 6 HOH B 76 1176 148 HOH HOH . J 6 HOH B 77 1177 149 HOH HOH . J 6 HOH B 78 1178 150 HOH HOH . J 6 HOH B 79 1179 151 HOH HOH . J 6 HOH B 80 1180 153 HOH HOH . J 6 HOH B 81 1181 155 HOH HOH . J 6 HOH B 82 1182 158 HOH HOH . J 6 HOH B 83 1183 160 HOH HOH . J 6 HOH B 84 1184 162 HOH HOH . J 6 HOH B 85 1185 163 HOH HOH . J 6 HOH B 86 1186 165 HOH HOH . J 6 HOH B 87 1187 170 HOH HOH . J 6 HOH B 88 1188 172 HOH HOH . J 6 HOH B 89 1189 174 HOH HOH . J 6 HOH B 90 1190 175 HOH HOH . J 6 HOH B 91 1191 176 HOH HOH . J 6 HOH B 92 1192 177 HOH HOH . J 6 HOH B 93 1193 179 HOH HOH . J 6 HOH B 94 1194 181 HOH HOH . J 6 HOH B 95 1195 183 HOH HOH . J 6 HOH B 96 1196 186 HOH HOH . J 6 HOH B 97 1197 188 HOH HOH . J 6 HOH B 98 1198 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.981 _atom_site.Cartn_y 41.456 _atom_site.Cartn_z 47.237 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #