data_4GP8 # _model_server_result.job_id CBPNgM-Qc6_9fnJvlGd3wQ _model_server_result.datetime_utc '2024-11-15 05:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":605}' # _entry.id 4GP8 # _exptl.entry_id 4GP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.52 _cell.angle_gamma 90 _cell.entry_id 4GP8 _cell.length_a 143.38 _cell.length_b 98.88 _cell.length_c 95.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 S N N ? 8 T N N ? 8 V N N ? 8 W N N ? 8 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 72 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 A NE2 HIS 288 A HIS 282 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A NE2 HIS 289 A HIS 283 1_555 D CU CU . A CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 390 A HIS 384 1_555 F FE HAS . A HAS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 A NE2 HIS 392 A HIS 386 1_555 E FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc6 D CU CU . A CU 601 1_555 G O2 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc7 D CU CU . A CU 601 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc8 F FE HAS . A HAS 603 1_555 G O1 PER . A PER 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc9 B ND1 HIS 114 B HIS 114 1_555 U CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 U CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 B SG CYS 149 B CYS 149 1_555 U CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc12 B O GLN 151 B GLN 151 1_555 U CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc13 B SG CYS 153 B CYS 153 1_555 U CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc14 B SG CYS 153 B CYS 153 1_555 U CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc15 B ND1 HIS 157 B HIS 157 1_555 U CU1 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc16 B SD MET 160 B MET 160 1_555 U CU2 CUA . B CUA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 456 n n C10 C9 OLC doub 457 n n C10 C11 OLC sing 458 n n C9 C8 OLC sing 459 n n C17 C16 OLC sing 460 z n C11 C12 OLC sing 461 n n C8 C7 OLC sing 462 n n C24 C22 OLC sing 463 n n C24 O25 OLC sing 464 n n C16 C15 OLC sing 465 n n C12 C13 OLC sing 466 n n C7 C6 OLC sing 467 n n C15 C14 OLC sing 468 n n C13 C14 OLC sing 469 n n C6 C5 OLC sing 470 n n C5 C4 OLC sing 471 n n C4 C3 OLC sing 472 n n C3 C2 OLC sing 473 n n C2 C1 OLC sing 474 n n C21 C22 OLC sing 475 n n C21 O20 OLC sing 476 n n C1 O19 OLC doub 477 n n C1 O20 OLC sing 478 n n C22 O23 OLC sing 479 n n C18 H18 OLC sing 480 n n C18 H18A OLC sing 481 n n C18 H18B OLC sing 482 n n C10 H10 OLC sing 483 n n C9 H9 OLC sing 484 n n C17 H17 OLC sing 485 n n C17 H17A OLC sing 486 n n C11 H11 OLC sing 487 n n C11 H11A OLC sing 488 n n C8 H8 OLC sing 489 n n C8 H8A OLC sing 490 n n C24 H24 OLC sing 491 n n C24 H24A OLC sing 492 n n C16 H16 OLC sing 493 n n C16 H16A OLC sing 494 n n C12 H12 OLC sing 495 n n C12 H12A OLC sing 496 n n C7 H7 OLC sing 497 n n C7 H7A OLC sing 498 n n C15 H15 OLC sing 499 n n C15 H15A OLC sing 500 n n C13 H13 OLC sing 501 n n C13 H13A OLC sing 502 n n C6 H6 OLC sing 503 n n C6 H6A OLC sing 504 n n C14 H14 OLC sing 505 n n C14 H14A OLC sing 506 n n C5 H5 OLC sing 507 n n C5 H5A OLC sing 508 n n C4 H4 OLC sing 509 n n C4 H4A OLC sing 510 n n C3 H3 OLC sing 511 n n C3 H3A OLC sing 512 n n C2 H2 OLC sing 513 n n C2 H2A OLC sing 514 n n C21 H21 OLC sing 515 n n C21 H21A OLC sing 516 n n C22 H22 OLC sing 517 n n O25 HO25 OLC sing 518 n n O23 HO23 OLC sing 519 n n # _atom_sites.entry_id 4GP8 _atom_sites.fract_transf_matrix[1][1] 0.006974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005356 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 601 803 CU CU . E 5 HEM A 1 602 800 HEM HEM . F 6 HAS A 1 603 801 HAS HAS . G 7 PER A 1 604 802 PER PER . H 8 OLC A 1 605 1 OLC OLC . I 8 OLC A 1 606 2 OLC OLC . J 8 OLC A 1 607 3 OLC OLC . K 8 OLC A 1 608 4 OLC OLC . L 8 OLC A 1 609 8 OLC OLC . M 8 OLC A 1 610 9 OLC OLC . N 8 OLC A 1 611 10 OLC OLC . O 8 OLC A 1 612 11 OLC OLC . P 8 OLC A 1 613 12 OLC OLC . Q 8 OLC A 1 614 13 OLC OLC . R 8 OLC A 1 615 14 OLC OLC . S 8 OLC A 1 616 15 OLC OLC . T 8 OLC A 1 617 16 OLC OLC . U 9 CUA B 1 201 802 CUA CUA . V 8 OLC B 1 202 6 OLC OLC . W 8 OLC B 1 203 7 OLC OLC . X 8 OLC C 1 101 5 OLC OLC . Y 10 HOH A 1 701 1 HOH HOH . Y 10 HOH A 2 702 3 HOH HOH . Y 10 HOH A 3 703 4 HOH HOH . Y 10 HOH A 4 704 5 HOH HOH . Y 10 HOH A 5 705 7 HOH HOH . Y 10 HOH A 6 706 8 HOH HOH . Y 10 HOH A 7 707 11 HOH HOH . Y 10 HOH A 8 708 14 HOH HOH . Y 10 HOH A 9 709 17 HOH HOH . Y 10 HOH A 10 710 18 HOH HOH . Y 10 HOH A 11 711 19 HOH HOH . Y 10 HOH A 12 712 22 HOH HOH . Y 10 HOH A 13 713 23 HOH HOH . Y 10 HOH A 14 714 24 HOH HOH . Y 10 HOH A 15 715 26 HOH HOH . Y 10 HOH A 16 716 27 HOH HOH . Y 10 HOH A 17 717 28 HOH HOH . Y 10 HOH A 18 718 29 HOH HOH . Y 10 HOH A 19 719 30 HOH HOH . Y 10 HOH A 20 720 31 HOH HOH . Y 10 HOH A 21 721 32 HOH HOH . Y 10 HOH A 22 722 35 HOH HOH . Y 10 HOH A 23 723 37 HOH HOH . Y 10 HOH A 24 724 38 HOH HOH . Y 10 HOH A 25 725 39 HOH HOH . Y 10 HOH A 26 726 42 HOH HOH . Y 10 HOH A 27 727 43 HOH HOH . Y 10 HOH A 28 728 44 HOH HOH . Y 10 HOH A 29 729 45 HOH HOH . Y 10 HOH A 30 730 48 HOH HOH . Y 10 HOH A 31 731 49 HOH HOH . Y 10 HOH A 32 732 50 HOH HOH . Y 10 HOH A 33 733 51 HOH HOH . Y 10 HOH A 34 734 55 HOH HOH . Y 10 HOH A 35 735 57 HOH HOH . Y 10 HOH A 36 736 61 HOH HOH . Y 10 HOH A 37 737 63 HOH HOH . Y 10 HOH A 38 738 65 HOH HOH . Y 10 HOH A 39 739 66 HOH HOH . Y 10 HOH A 40 740 67 HOH HOH . Y 10 HOH A 41 741 68 HOH HOH . Y 10 HOH A 42 742 69 HOH HOH . Y 10 HOH A 43 743 70 HOH HOH . Y 10 HOH A 44 744 71 HOH HOH . Y 10 HOH A 45 745 73 HOH HOH . Y 10 HOH A 46 746 75 HOH HOH . Z 10 HOH B 1 301 2 HOH HOH . Z 10 HOH B 2 302 6 HOH HOH . Z 10 HOH B 3 303 9 HOH HOH . Z 10 HOH B 4 304 10 HOH HOH . Z 10 HOH B 5 305 12 HOH HOH . Z 10 HOH B 6 306 13 HOH HOH . Z 10 HOH B 7 307 15 HOH HOH . Z 10 HOH B 8 308 16 HOH HOH . Z 10 HOH B 9 309 20 HOH HOH . Z 10 HOH B 10 310 21 HOH HOH . Z 10 HOH B 11 311 25 HOH HOH . Z 10 HOH B 12 312 33 HOH HOH . Z 10 HOH B 13 313 34 HOH HOH . Z 10 HOH B 14 314 36 HOH HOH . Z 10 HOH B 15 315 40 HOH HOH . Z 10 HOH B 16 316 41 HOH HOH . Z 10 HOH B 17 317 46 HOH HOH . Z 10 HOH B 18 318 47 HOH HOH . Z 10 HOH B 19 319 52 HOH HOH . Z 10 HOH B 20 320 53 HOH HOH . Z 10 HOH B 21 321 54 HOH HOH . Z 10 HOH B 22 322 56 HOH HOH . Z 10 HOH B 23 323 58 HOH HOH . Z 10 HOH B 24 324 59 HOH HOH . Z 10 HOH B 25 325 60 HOH HOH . Z 10 HOH B 26 326 62 HOH HOH . Z 10 HOH B 27 327 64 HOH HOH . Z 10 HOH B 28 328 72 HOH HOH . Z 10 HOH B 29 329 74 HOH HOH . Z 10 HOH B 30 330 76 HOH HOH . Z 10 HOH B 31 331 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 8 5.706 -18.272 25.024 1 64.25 ? C18 OLC 605 A 1 HETATM 2 C C10 OLC . . . H 8 -1.891 -17.57 21.09 1 59.94 ? C10 OLC 605 A 1 HETATM 3 C C9 OLC . . . H 8 -2.727 -17.615 20.048 1 58.78 ? C9 OLC 605 A 1 HETATM 4 C C17 OLC . . . H 8 4.179 -18.296 25.319 1 65.32 ? C17 OLC 605 A 1 HETATM 5 C C11 OLC . . . H 8 -2.178 -17.082 22.503 1 60.58 ? C11 OLC 605 A 1 HETATM 6 C C8 OLC . . . H 8 -4.158 -17.17 20.068 1 57.52 ? C8 OLC 605 A 1 HETATM 7 C C24 OLC . . . H 8 -13.634 -19.639 17.784 1 74.83 ? C24 OLC 605 A 1 HETATM 8 C C16 OLC . . . H 8 3.523 -16.876 25.312 1 62.85 ? C16 OLC 605 A 1 HETATM 9 C C12 OLC . . . H 8 -1.038 -17.566 23.427 1 59.99 ? C12 OLC 605 A 1 HETATM 10 C C7 OLC . . . H 8 -4.76 -17.611 18.752 1 58.39 ? C7 OLC 605 A 1 HETATM 11 C C15 OLC . . . H 8 1.986 -16.905 25.367 1 60.97 ? C15 OLC 605 A 1 HETATM 12 C C13 OLC . . . H 8 -0.128 -16.459 23.974 1 58.86 ? C13 OLC 605 A 1 HETATM 13 C C6 OLC . . . H 8 -6.246 -17.277 18.74 1 61.68 ? C6 OLC 605 A 1 HETATM 14 C C14 OLC . . . H 8 1.352 -16.843 23.971 1 59.66 ? C14 OLC 605 A 1 HETATM 15 C C5 OLC . . . H 8 -7.092 -18.479 19.178 1 64.87 ? C5 OLC 605 A 1 HETATM 16 C C4 OLC . . . H 8 -7.639 -19.226 17.964 1 67.12 ? C4 OLC 605 A 1 HETATM 17 C C3 OLC . . . H 8 -8.516 -20.393 18.381 1 69.75 ? C3 OLC 605 A 1 HETATM 18 C C2 OLC . . . H 8 -9.975 -20.142 18.003 1 71.96 ? C2 OLC 605 A 1 HETATM 19 C C21 OLC . . . H 8 -12.613 -20.404 15.664 1 72.96 ? C21 OLC 605 A 1 HETATM 20 C C1 OLC . . . H 8 -10.328 -20.644 16.607 1 73.38 ? C1 OLC 605 A 1 HETATM 21 C C22 OLC . . . H 8 -13.41 -20.84 16.884 1 73.55 ? C22 OLC 605 A 1 HETATM 22 O O19 OLC . . . H 8 -9.771 -21.592 16.058 1 74.79 ? O19 OLC 605 A 1 HETATM 23 O O25 OLC . . . H 8 -14.398 -20.004 18.95 1 76.9 ? O25 OLC 605 A 1 HETATM 24 O O23 OLC . . . H 8 -14.67 -21.363 16.455 1 74.39 ? O23 OLC 605 A 1 HETATM 25 O O20 OLC . . . H 8 -11.351 -19.879 16.072 1 73.35 ? O20 OLC 605 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #