data_4GQP # _model_server_result.job_id wxq16TcAWGVYzwGcIRAb_g _model_server_result.datetime_utc '2024-11-25 03:32:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4GQP # _exptl.entry_id 4GQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.233 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-methyl-1-phenylpropan-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.2 _cell.angle_gamma 90 _cell.entry_id 4GQP _cell.length_a 34.516 _cell.length_b 65.265 _cell.length_c 48.483 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf2 A SG CYS 155 H CYS 1023 1_555 A SG CYS 221 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C10 H15 N' _chem_comp.formula_weight 149.233 _chem_comp.id B40 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-methyl-1-phenylpropan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Methamphetamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CM B40 sing 70 n n N CA B40 sing 71 n n N HN B40 sing 72 n n C CA B40 sing 73 n n CA CB B40 sing 74 n n CA HA B40 sing 75 n n C H B40 sing 76 n n C HB B40 sing 77 n n C HC B40 sing 78 n n CB CG B40 sing 79 n n CB HBA B40 sing 80 n n CB HBB B40 sing 81 n n CD2 CG B40 doub 82 n y CG CD1 B40 sing 83 n y CD1 CE1 B40 doub 84 n y CD1 HD1 B40 sing 85 n n CD2 CE2 B40 sing 86 n y CD2 HD2 B40 sing 87 n n CZ CE1 B40 sing 88 n y CE1 HE1 B40 sing 89 n n CE2 CZ B40 doub 90 n y CE2 HE2 B40 sing 91 n n CZ HZ B40 sing 92 n n CM HM B40 sing 93 n n CM HMA B40 sing 94 n n CM HMB B40 sing 95 n n # _atom_sites.entry_id 4GQP _atom_sites.fract_transf_matrix[1][1] 0.028972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004175 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B40 H 1 1201 1201 B40 B40 . C 3 HOH H 1 1301 1301 HOH HOH . C 3 HOH H 2 1302 1302 HOH HOH . C 3 HOH H 3 1303 1303 HOH HOH . C 3 HOH H 4 1304 1304 HOH HOH . C 3 HOH H 5 1305 1305 HOH HOH . C 3 HOH H 6 1306 1306 HOH HOH . C 3 HOH H 7 1307 1307 HOH HOH . C 3 HOH H 8 1308 1308 HOH HOH . C 3 HOH H 9 1309 1309 HOH HOH . C 3 HOH H 10 1310 1310 HOH HOH . C 3 HOH H 11 1311 1311 HOH HOH . C 3 HOH H 12 1312 1312 HOH HOH . C 3 HOH H 13 1313 1313 HOH HOH . C 3 HOH H 14 1314 1314 HOH HOH . C 3 HOH H 15 1315 1315 HOH HOH . C 3 HOH H 16 1316 1316 HOH HOH . C 3 HOH H 17 1317 1317 HOH HOH . C 3 HOH H 18 1318 1318 HOH HOH . C 3 HOH H 19 1319 1319 HOH HOH . C 3 HOH H 20 1320 1320 HOH HOH . C 3 HOH H 21 1321 1321 HOH HOH . C 3 HOH H 22 1322 1322 HOH HOH . C 3 HOH H 23 1323 1323 HOH HOH . C 3 HOH H 24 1324 1324 HOH HOH . C 3 HOH H 25 1325 1325 HOH HOH . C 3 HOH H 26 1326 1326 HOH HOH . C 3 HOH H 27 1327 1327 HOH HOH . C 3 HOH H 28 1328 1328 HOH HOH . C 3 HOH H 29 1329 1329 HOH HOH . C 3 HOH H 30 1330 1330 HOH HOH . C 3 HOH H 31 1331 1331 HOH HOH . C 3 HOH H 32 1332 1332 HOH HOH . C 3 HOH H 33 1333 1333 HOH HOH . C 3 HOH H 34 1334 1334 HOH HOH . C 3 HOH H 35 1335 1335 HOH HOH . C 3 HOH H 36 1336 1336 HOH HOH . C 3 HOH H 37 1337 1337 HOH HOH . C 3 HOH H 38 1338 1338 HOH HOH . C 3 HOH H 39 1339 1339 HOH HOH . C 3 HOH H 40 1340 1340 HOH HOH . C 3 HOH H 41 1341 1341 HOH HOH . C 3 HOH H 42 1342 1342 HOH HOH . C 3 HOH H 43 1343 1343 HOH HOH . C 3 HOH H 44 1344 1344 HOH HOH . C 3 HOH H 45 1345 1345 HOH HOH . C 3 HOH H 46 1346 1346 HOH HOH . C 3 HOH H 47 1347 1347 HOH HOH . C 3 HOH H 48 1348 1348 HOH HOH . C 3 HOH H 49 1349 1349 HOH HOH . C 3 HOH H 50 1350 1350 HOH HOH . C 3 HOH H 51 1351 1351 HOH HOH . C 3 HOH H 52 1352 1352 HOH HOH . C 3 HOH H 53 1353 1353 HOH HOH . C 3 HOH H 54 1354 1354 HOH HOH . C 3 HOH H 55 1355 1355 HOH HOH . C 3 HOH H 56 1356 1356 HOH HOH . C 3 HOH H 57 1357 1357 HOH HOH . C 3 HOH H 58 1358 1358 HOH HOH . C 3 HOH H 59 1359 1359 HOH HOH . C 3 HOH H 60 1360 1360 HOH HOH . C 3 HOH H 61 1361 1361 HOH HOH . C 3 HOH H 62 1362 1362 HOH HOH . C 3 HOH H 63 1363 1363 HOH HOH . C 3 HOH H 64 1364 1364 HOH HOH . C 3 HOH H 65 1365 1365 HOH HOH . C 3 HOH H 66 1366 1366 HOH HOH . C 3 HOH H 67 1367 1367 HOH HOH . C 3 HOH H 68 1368 1369 HOH HOH . C 3 HOH H 69 1369 1370 HOH HOH . C 3 HOH H 70 1370 1372 HOH HOH . C 3 HOH H 71 1371 1373 HOH HOH . C 3 HOH H 72 1372 1374 HOH HOH . C 3 HOH H 73 1373 1375 HOH HOH . C 3 HOH H 74 1374 1378 HOH HOH . C 3 HOH H 75 1375 1379 HOH HOH . C 3 HOH H 76 1376 1380 HOH HOH . C 3 HOH H 77 1377 1381 HOH HOH . C 3 HOH H 78 1378 1382 HOH HOH . C 3 HOH H 79 1379 1383 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N B40 . . . B 2 -2.224 -2.041 15.297 1 18.56 ? N B40 1201 H 1 HETATM 2 C CA B40 . . . B 2 -2.815 -3.403 15.524 1 19.12 ? CA B40 1201 H 1 HETATM 3 C C B40 . . . B 2 -1.63 -4.328 15.353 1 15.21 ? C B40 1201 H 1 HETATM 4 C CB B40 . . . B 2 -3.315 -3.664 17.027 1 19.31 ? CB B40 1201 H 1 HETATM 5 C CG B40 . . . B 2 -4.03 -4.926 17.213 1 20.37 ? CG B40 1201 H 1 HETATM 6 C CD1 B40 . . . B 2 -3.368 -6.019 17.723 1 19.34 ? CD1 B40 1201 H 1 HETATM 7 C CD2 B40 . . . B 2 -5.404 -5.052 16.988 1 16.46 ? CD2 B40 1201 H 1 HETATM 8 C CE1 B40 . . . B 2 -4.071 -7.196 17.967 1 19.88 ? CE1 B40 1201 H 1 HETATM 9 C CE2 B40 . . . B 2 -6.135 -6.243 17.171 1 16.82 ? CE2 B40 1201 H 1 HETATM 10 C CZ B40 . . . B 2 -5.465 -7.351 17.672 1 15.7 ? CZ B40 1201 H 1 HETATM 11 C CM B40 . . . B 2 -3.388 -1.088 15.261 1 17.77 ? CM B40 1201 H 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #