data_4GR8 # _model_server_result.job_id mdpAZfL4PX_NdOBC_I8OKg _model_server_result.datetime_utc '2024-12-01 02:02:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4gr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4GR8 # _exptl.entry_id 4GR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GR8 _cell.length_a 67.83 _cell.length_b 61.47 _cell.length_c 33.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 14 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc2 A OD1 ASP 14 A ASP 124 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc3 A O ASP 48 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc4 A NE2 HIS 58 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc5 A OD2 ASP 60 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc6 A OD1 ASP 65 A ASP 175 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 A O GLY 66 A GLY 176 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 A O GLY 68 A GLY 178 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 A O ILE 70 A ILE 180 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc10 A NE2 HIS 73 A HIS 183 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc11 A O GLY 80 A GLY 190 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 A O GLY 82 A GLY 192 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc13 A OD1 ASP 84 A ASP 194 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc14 A ND1 HIS 86 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc15 A OD2 ASP 88 A ASP 198 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc16 A O GLU 89 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc17 A OE2 GLU 89 A GLU 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc18 A O GLU 91 A GLU 201 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc19 A OE2 GLU 91 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc20 A NE2 HIS 108 A HIS 218 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc21 A NE2 HIS 112 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc22 A NE2 HIS 118 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 G O3 R4C . A R4C 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc24 D CA CA . A CA 303 1_555 I O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc25 D CA CA . A CA 303 1_555 I O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc26 E CA CA . A CA 304 1_555 I O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc27 E CA CA . A CA 304 1_555 I O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4GR8 _atom_sites.fract_transf_matrix[1][1] 0.014743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 500 ZN ZN . C 2 ZN A 1 302 501 ZN ZN . D 3 CA A 1 303 502 CA CA . E 3 CA A 1 304 503 CA CA . F 3 CA A 1 305 504 CA CA . G 4 R4C A 1 306 1 R4C R4C . H 5 IMD A 1 307 1 IMD IMD . I 6 HOH A 1 401 1 HOH HOH . I 6 HOH A 2 402 2 HOH HOH . I 6 HOH A 3 403 3 HOH HOH . I 6 HOH A 4 404 4 HOH HOH . I 6 HOH A 5 405 5 HOH HOH . I 6 HOH A 6 406 6 HOH HOH . I 6 HOH A 7 407 7 HOH HOH . I 6 HOH A 8 408 8 HOH HOH . I 6 HOH A 9 409 9 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 11 HOH HOH . I 6 HOH A 12 412 12 HOH HOH . I 6 HOH A 13 413 13 HOH HOH . I 6 HOH A 14 414 14 HOH HOH . I 6 HOH A 15 415 15 HOH HOH . I 6 HOH A 16 416 16 HOH HOH . I 6 HOH A 17 417 17 HOH HOH . I 6 HOH A 18 418 18 HOH HOH . I 6 HOH A 19 419 19 HOH HOH . I 6 HOH A 20 420 20 HOH HOH . I 6 HOH A 21 421 21 HOH HOH . I 6 HOH A 22 422 22 HOH HOH . I 6 HOH A 23 423 23 HOH HOH . I 6 HOH A 24 424 24 HOH HOH . I 6 HOH A 25 425 25 HOH HOH . I 6 HOH A 26 426 26 HOH HOH . I 6 HOH A 27 427 27 HOH HOH . I 6 HOH A 28 428 28 HOH HOH . I 6 HOH A 29 429 29 HOH HOH . I 6 HOH A 30 430 30 HOH HOH . I 6 HOH A 31 431 31 HOH HOH . I 6 HOH A 32 432 32 HOH HOH . I 6 HOH A 33 433 33 HOH HOH . I 6 HOH A 34 434 34 HOH HOH . I 6 HOH A 35 435 35 HOH HOH . I 6 HOH A 36 436 36 HOH HOH . I 6 HOH A 37 437 37 HOH HOH . I 6 HOH A 38 438 38 HOH HOH . I 6 HOH A 39 439 39 HOH HOH . I 6 HOH A 40 440 40 HOH HOH . I 6 HOH A 41 441 41 HOH HOH . I 6 HOH A 42 442 42 HOH HOH . I 6 HOH A 43 443 43 HOH HOH . I 6 HOH A 44 444 44 HOH HOH . I 6 HOH A 45 445 45 HOH HOH . I 6 HOH A 46 446 46 HOH HOH . I 6 HOH A 47 447 47 HOH HOH . I 6 HOH A 48 448 48 HOH HOH . I 6 HOH A 49 449 49 HOH HOH . I 6 HOH A 50 450 50 HOH HOH . I 6 HOH A 51 451 51 HOH HOH . I 6 HOH A 52 452 52 HOH HOH . I 6 HOH A 53 453 53 HOH HOH . I 6 HOH A 54 454 54 HOH HOH . I 6 HOH A 55 455 55 HOH HOH . I 6 HOH A 56 456 56 HOH HOH . I 6 HOH A 57 457 57 HOH HOH . I 6 HOH A 58 458 58 HOH HOH . I 6 HOH A 59 459 60 HOH HOH . I 6 HOH A 60 460 61 HOH HOH . I 6 HOH A 61 461 63 HOH HOH . I 6 HOH A 62 462 64 HOH HOH . I 6 HOH A 63 463 65 HOH HOH . I 6 HOH A 64 464 66 HOH HOH . I 6 HOH A 65 465 67 HOH HOH . I 6 HOH A 66 466 68 HOH HOH . I 6 HOH A 67 467 69 HOH HOH . I 6 HOH A 68 468 70 HOH HOH . I 6 HOH A 69 469 71 HOH HOH . I 6 HOH A 70 470 72 HOH HOH . I 6 HOH A 71 471 73 HOH HOH . I 6 HOH A 72 472 74 HOH HOH . I 6 HOH A 73 473 75 HOH HOH . I 6 HOH A 74 474 76 HOH HOH . I 6 HOH A 75 475 77 HOH HOH . I 6 HOH A 76 476 78 HOH HOH . I 6 HOH A 77 477 79 HOH HOH . I 6 HOH A 78 478 80 HOH HOH . I 6 HOH A 79 479 81 HOH HOH . I 6 HOH A 80 480 82 HOH HOH . I 6 HOH A 81 481 83 HOH HOH . I 6 HOH A 82 482 84 HOH HOH . I 6 HOH A 83 483 85 HOH HOH . I 6 HOH A 84 484 86 HOH HOH . I 6 HOH A 85 485 87 HOH HOH . I 6 HOH A 86 486 88 HOH HOH . I 6 HOH A 87 487 89 HOH HOH . I 6 HOH A 88 488 91 HOH HOH . I 6 HOH A 89 489 92 HOH HOH . I 6 HOH A 90 490 93 HOH HOH . I 6 HOH A 91 491 94 HOH HOH . I 6 HOH A 92 492 95 HOH HOH . I 6 HOH A 93 493 96 HOH HOH . I 6 HOH A 94 494 98 HOH HOH . I 6 HOH A 95 495 99 HOH HOH . I 6 HOH A 96 496 100 HOH HOH . I 6 HOH A 97 497 101 HOH HOH . I 6 HOH A 98 498 102 HOH HOH . I 6 HOH A 99 499 103 HOH HOH . I 6 HOH A 100 500 104 HOH HOH . I 6 HOH A 101 501 105 HOH HOH . I 6 HOH A 102 502 106 HOH HOH . I 6 HOH A 103 503 107 HOH HOH . I 6 HOH A 104 504 108 HOH HOH . I 6 HOH A 105 505 109 HOH HOH . I 6 HOH A 106 506 110 HOH HOH . I 6 HOH A 107 507 111 HOH HOH . I 6 HOH A 108 508 112 HOH HOH . I 6 HOH A 109 509 113 HOH HOH . I 6 HOH A 110 510 114 HOH HOH . I 6 HOH A 111 511 115 HOH HOH . I 6 HOH A 112 512 116 HOH HOH . I 6 HOH A 113 513 117 HOH HOH . I 6 HOH A 114 514 118 HOH HOH . I 6 HOH A 115 515 119 HOH HOH . I 6 HOH A 116 516 120 HOH HOH . I 6 HOH A 117 517 121 HOH HOH . I 6 HOH A 118 518 123 HOH HOH . I 6 HOH A 119 519 124 HOH HOH . I 6 HOH A 120 520 125 HOH HOH . I 6 HOH A 121 521 126 HOH HOH . I 6 HOH A 122 522 127 HOH HOH . I 6 HOH A 123 523 128 HOH HOH . I 6 HOH A 124 524 129 HOH HOH . I 6 HOH A 125 525 130 HOH HOH . I 6 HOH A 126 526 131 HOH HOH . I 6 HOH A 127 527 132 HOH HOH . I 6 HOH A 128 528 133 HOH HOH . I 6 HOH A 129 529 134 HOH HOH . I 6 HOH A 130 530 135 HOH HOH . I 6 HOH A 131 531 136 HOH HOH . I 6 HOH A 132 532 137 HOH HOH . I 6 HOH A 133 533 138 HOH HOH . I 6 HOH A 134 534 139 HOH HOH . I 6 HOH A 135 535 140 HOH HOH . I 6 HOH A 136 536 141 HOH HOH . I 6 HOH A 137 537 142 HOH HOH . I 6 HOH A 138 538 143 HOH HOH . I 6 HOH A 139 539 144 HOH HOH . I 6 HOH A 140 540 145 HOH HOH . I 6 HOH A 141 541 146 HOH HOH . I 6 HOH A 142 542 147 HOH HOH . I 6 HOH A 143 543 148 HOH HOH . I 6 HOH A 144 544 149 HOH HOH . I 6 HOH A 145 545 150 HOH HOH . I 6 HOH A 146 546 151 HOH HOH . I 6 HOH A 147 547 152 HOH HOH . I 6 HOH A 148 548 153 HOH HOH . I 6 HOH A 149 549 154 HOH HOH . I 6 HOH A 150 550 155 HOH HOH . I 6 HOH A 151 551 156 HOH HOH . I 6 HOH A 152 552 157 HOH HOH . I 6 HOH A 153 553 158 HOH HOH . I 6 HOH A 154 554 159 HOH HOH . I 6 HOH A 155 555 160 HOH HOH . I 6 HOH A 156 556 162 HOH HOH . I 6 HOH A 157 557 163 HOH HOH . I 6 HOH A 158 558 164 HOH HOH . I 6 HOH A 159 559 165 HOH HOH . I 6 HOH A 160 560 166 HOH HOH . I 6 HOH A 161 561 167 HOH HOH . I 6 HOH A 162 562 168 HOH HOH . I 6 HOH A 163 563 169 HOH HOH . I 6 HOH A 164 564 170 HOH HOH . I 6 HOH A 165 565 172 HOH HOH . I 6 HOH A 166 566 173 HOH HOH . I 6 HOH A 167 567 174 HOH HOH . I 6 HOH A 168 568 175 HOH HOH . I 6 HOH A 169 569 176 HOH HOH . I 6 HOH A 170 570 177 HOH HOH . I 6 HOH A 171 571 178 HOH HOH . I 6 HOH A 172 572 179 HOH HOH . I 6 HOH A 173 573 180 HOH HOH . I 6 HOH A 174 574 181 HOH HOH . I 6 HOH A 175 575 182 HOH HOH . I 6 HOH A 176 576 183 HOH HOH . I 6 HOH A 177 577 185 HOH HOH . I 6 HOH A 178 578 186 HOH HOH . I 6 HOH A 179 579 187 HOH HOH . I 6 HOH A 180 580 188 HOH HOH . I 6 HOH A 181 581 189 HOH HOH . I 6 HOH A 182 582 190 HOH HOH . I 6 HOH A 183 583 191 HOH HOH . I 6 HOH A 184 584 192 HOH HOH . I 6 HOH A 185 585 193 HOH HOH . I 6 HOH A 186 586 194 HOH HOH . I 6 HOH A 187 587 195 HOH HOH . I 6 HOH A 188 588 196 HOH HOH . I 6 HOH A 189 589 197 HOH HOH . I 6 HOH A 190 590 198 HOH HOH . I 6 HOH A 191 591 199 HOH HOH . I 6 HOH A 192 592 200 HOH HOH . I 6 HOH A 193 593 201 HOH HOH . I 6 HOH A 194 594 202 HOH HOH . I 6 HOH A 195 595 203 HOH HOH . I 6 HOH A 196 596 204 HOH HOH . I 6 HOH A 197 597 205 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -17.249 _atom_site.Cartn_y 20.434 _atom_site.Cartn_z -14.342 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #