data_4GRB # _model_server_result.job_id 4G4-li4r-Iw6QKTJR_7QAA _model_server_result.datetime_utc '2024-11-24 19:51:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4grb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4GRB # _exptl.entry_id 4GRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(2-{[4-(dimethylcarbamoyl)phenyl]amino}-4-methoxypyrimidin-5-yl)thiophene-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GRB _cell.length_a 49.431 _cell.length_b 61.897 _cell.length_c 116.241 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H18 N4 O4 S' _chem_comp.formula_weight 398.436 _chem_comp.id 0XG _chem_comp.mon_nstd_flag . _chem_comp.name '5-(2-{[4-(dimethylcarbamoyl)phenyl]amino}-4-methoxypyrimidin-5-yl)thiophene-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 0XG doub 1 n y C8 C9 0XG sing 2 n y N14 C15 0XG doub 3 n y N14 C13 0XG sing 4 n y N12 C13 0XG sing 5 n n N12 C9 0XG sing 6 n n C15 C16 0XG sing 7 n y C7 C6 0XG sing 8 n y S25 C24 0XG sing 9 n y S25 C21 0XG sing 10 n y C1 N2 0XG sing 11 n n C13 N18 0XG doub 12 n y C9 C10 0XG doub 13 n y C16 C21 0XG sing 14 n n C16 C17 0XG doub 15 n y N2 C4 0XG sing 16 n n N2 C3 0XG sing 17 n n C24 C23 0XG doub 18 n y C6 C4 0XG sing 19 n n C6 C11 0XG doub 20 n y N18 C17 0XG sing 21 n y C21 C22 0XG doub 22 n y C10 C11 0XG sing 23 n y C17 O19 0XG sing 24 n n C4 O5 0XG doub 25 n n C23 C22 0XG sing 26 n y C23 C26 0XG sing 27 n n O19 C20 0XG sing 28 n n O28 C26 0XG doub 29 n n C26 O27 0XG sing 30 n n C1 H1 0XG sing 31 n n C1 H2 0XG sing 32 n n C1 H3 0XG sing 33 n n C3 H4 0XG sing 34 n n C3 H5 0XG sing 35 n n C3 H6 0XG sing 36 n n C7 H7 0XG sing 37 n n C8 H8 0XG sing 38 n n C10 H9 0XG sing 39 n n C11 H10 0XG sing 40 n n C15 H11 0XG sing 41 n n C20 H12 0XG sing 42 n n C20 H13 0XG sing 43 n n C20 H14 0XG sing 44 n n C22 H15 0XG sing 45 n n C24 H16 0XG sing 46 n n N12 H17 0XG sing 47 n n O27 H18 0XG sing 48 n n # _atom_sites.entry_id 4GRB _atom_sites.fract_transf_matrix[1][1] 0.02023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 341 CL CL . C 3 0XG A 1 402 1 0XG INH . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 5 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 9 HOH HOH . D 4 HOH A 8 508 10 HOH HOH . D 4 HOH A 9 509 11 HOH HOH . D 4 HOH A 10 510 12 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 14 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 17 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 20 HOH HOH . D 4 HOH A 18 518 21 HOH HOH . D 4 HOH A 19 519 22 HOH HOH . D 4 HOH A 20 520 24 HOH HOH . D 4 HOH A 21 521 25 HOH HOH . D 4 HOH A 22 522 26 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 28 HOH HOH . D 4 HOH A 25 525 30 HOH HOH . D 4 HOH A 26 526 32 HOH HOH . D 4 HOH A 27 527 33 HOH HOH . D 4 HOH A 28 528 34 HOH HOH . D 4 HOH A 29 529 35 HOH HOH . D 4 HOH A 30 530 36 HOH HOH . D 4 HOH A 31 531 37 HOH HOH . D 4 HOH A 32 532 38 HOH HOH . D 4 HOH A 33 533 39 HOH HOH . D 4 HOH A 34 534 42 HOH HOH . D 4 HOH A 35 535 43 HOH HOH . D 4 HOH A 36 536 44 HOH HOH . D 4 HOH A 37 537 45 HOH HOH . D 4 HOH A 38 538 46 HOH HOH . D 4 HOH A 39 539 47 HOH HOH . D 4 HOH A 40 540 48 HOH HOH . D 4 HOH A 41 541 49 HOH HOH . D 4 HOH A 42 542 50 HOH HOH . D 4 HOH A 43 543 51 HOH HOH . D 4 HOH A 44 544 52 HOH HOH . D 4 HOH A 45 545 53 HOH HOH . D 4 HOH A 46 546 54 HOH HOH . D 4 HOH A 47 547 55 HOH HOH . D 4 HOH A 48 548 56 HOH HOH . D 4 HOH A 49 549 57 HOH HOH . D 4 HOH A 50 550 58 HOH HOH . D 4 HOH A 51 551 59 HOH HOH . D 4 HOH A 52 552 60 HOH HOH . D 4 HOH A 53 553 61 HOH HOH . D 4 HOH A 54 554 62 HOH HOH . D 4 HOH A 55 555 63 HOH HOH . D 4 HOH A 56 556 64 HOH HOH . D 4 HOH A 57 557 65 HOH HOH . D 4 HOH A 58 558 66 HOH HOH . D 4 HOH A 59 559 67 HOH HOH . D 4 HOH A 60 560 68 HOH HOH . D 4 HOH A 61 561 69 HOH HOH . D 4 HOH A 62 562 70 HOH HOH . D 4 HOH A 63 563 71 HOH HOH . D 4 HOH A 64 564 72 HOH HOH . D 4 HOH A 65 565 73 HOH HOH . D 4 HOH A 66 566 74 HOH HOH . D 4 HOH A 67 567 75 HOH HOH . D 4 HOH A 68 568 76 HOH HOH . D 4 HOH A 69 569 77 HOH HOH . D 4 HOH A 70 570 79 HOH HOH . D 4 HOH A 71 571 80 HOH HOH . D 4 HOH A 72 572 81 HOH HOH . D 4 HOH A 73 573 82 HOH HOH . D 4 HOH A 74 574 83 HOH HOH . D 4 HOH A 75 575 84 HOH HOH . D 4 HOH A 76 576 85 HOH HOH . D 4 HOH A 77 577 86 HOH HOH . D 4 HOH A 78 578 87 HOH HOH . D 4 HOH A 79 579 88 HOH HOH . D 4 HOH A 80 580 89 HOH HOH . D 4 HOH A 81 581 90 HOH HOH . D 4 HOH A 82 582 91 HOH HOH . D 4 HOH A 83 583 92 HOH HOH . D 4 HOH A 84 584 93 HOH HOH . D 4 HOH A 85 585 94 HOH HOH . D 4 HOH A 86 586 95 HOH HOH . D 4 HOH A 87 587 96 HOH HOH . D 4 HOH A 88 588 98 HOH HOH . D 4 HOH A 89 589 99 HOH HOH . D 4 HOH A 90 590 100 HOH HOH . D 4 HOH A 91 591 102 HOH HOH . D 4 HOH A 92 592 103 HOH HOH . D 4 HOH A 93 593 104 HOH HOH . D 4 HOH A 94 594 105 HOH HOH . D 4 HOH A 95 595 106 HOH HOH . D 4 HOH A 96 596 107 HOH HOH . D 4 HOH A 97 597 108 HOH HOH . D 4 HOH A 98 598 109 HOH HOH . D 4 HOH A 99 599 110 HOH HOH . D 4 HOH A 100 600 111 HOH HOH . D 4 HOH A 101 601 112 HOH HOH . D 4 HOH A 102 602 113 HOH HOH . D 4 HOH A 103 603 114 HOH HOH . D 4 HOH A 104 604 115 HOH HOH . D 4 HOH A 105 605 117 HOH HOH . D 4 HOH A 106 606 118 HOH HOH . D 4 HOH A 107 607 119 HOH HOH . D 4 HOH A 108 608 120 HOH HOH . D 4 HOH A 109 609 121 HOH HOH . D 4 HOH A 110 610 122 HOH HOH . D 4 HOH A 111 611 123 HOH HOH . D 4 HOH A 112 612 125 HOH HOH . D 4 HOH A 113 613 126 HOH HOH . D 4 HOH A 114 614 127 HOH HOH . D 4 HOH A 115 615 128 HOH HOH . D 4 HOH A 116 616 129 HOH HOH . D 4 HOH A 117 617 130 HOH HOH . D 4 HOH A 118 618 131 HOH HOH . D 4 HOH A 119 619 132 HOH HOH . D 4 HOH A 120 620 133 HOH HOH . D 4 HOH A 121 621 134 HOH HOH . D 4 HOH A 122 622 135 HOH HOH . D 4 HOH A 123 623 136 HOH HOH . D 4 HOH A 124 624 137 HOH HOH . D 4 HOH A 125 625 138 HOH HOH . D 4 HOH A 126 626 140 HOH HOH . D 4 HOH A 127 627 141 HOH HOH . D 4 HOH A 128 628 142 HOH HOH . D 4 HOH A 129 629 143 HOH HOH . D 4 HOH A 130 630 144 HOH HOH . D 4 HOH A 131 631 145 HOH HOH . D 4 HOH A 132 632 146 HOH HOH . D 4 HOH A 133 633 147 HOH HOH . D 4 HOH A 134 634 149 HOH HOH . D 4 HOH A 135 635 151 HOH HOH . D 4 HOH A 136 636 152 HOH HOH . D 4 HOH A 137 637 153 HOH HOH . D 4 HOH A 138 638 154 HOH HOH . D 4 HOH A 139 639 155 HOH HOH . D 4 HOH A 140 640 156 HOH HOH . D 4 HOH A 141 641 158 HOH HOH . D 4 HOH A 142 642 159 HOH HOH . D 4 HOH A 143 643 160 HOH HOH . D 4 HOH A 144 644 161 HOH HOH . D 4 HOH A 145 645 162 HOH HOH . D 4 HOH A 146 646 163 HOH HOH . D 4 HOH A 147 647 164 HOH HOH . D 4 HOH A 148 648 165 HOH HOH . D 4 HOH A 149 649 169 HOH HOH . D 4 HOH A 150 650 171 HOH HOH . D 4 HOH A 151 651 172 HOH HOH . D 4 HOH A 152 652 173 HOH HOH . D 4 HOH A 153 653 176 HOH HOH . D 4 HOH A 154 654 177 HOH HOH . D 4 HOH A 155 655 178 HOH HOH . D 4 HOH A 156 656 179 HOH HOH . D 4 HOH A 157 657 180 HOH HOH . D 4 HOH A 158 658 181 HOH HOH . D 4 HOH A 159 659 182 HOH HOH . D 4 HOH A 160 660 183 HOH HOH . D 4 HOH A 161 661 186 HOH HOH . D 4 HOH A 162 662 187 HOH HOH . D 4 HOH A 163 663 190 HOH HOH . D 4 HOH A 164 664 191 HOH HOH . D 4 HOH A 165 665 192 HOH HOH . D 4 HOH A 166 666 194 HOH HOH . D 4 HOH A 167 667 197 HOH HOH . D 4 HOH A 168 668 198 HOH HOH . D 4 HOH A 169 669 199 HOH HOH . D 4 HOH A 170 670 201 HOH HOH . D 4 HOH A 171 671 202 HOH HOH . D 4 HOH A 172 672 203 HOH HOH . D 4 HOH A 173 673 204 HOH HOH . D 4 HOH A 174 674 205 HOH HOH . D 4 HOH A 175 675 206 HOH HOH . D 4 HOH A 176 676 207 HOH HOH . D 4 HOH A 177 677 208 HOH HOH . D 4 HOH A 178 678 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0XG . . . C 3 19.717 40.481 6.404 1 66.6 ? C1 0XG 402 A 1 HETATM 2 C C3 0XG . . . C 3 21.434 39.486 7.834 1 67.76 ? C3 0XG 402 A 1 HETATM 3 O O5 0XG . . . C 3 18.397 38.97 8.696 1 67.42 ? O5 0XG 402 A 1 HETATM 4 C C7 0XG . . . C 3 18.536 36.925 6.169 1 61.23 ? C7 0XG 402 A 1 HETATM 5 C C8 0XG . . . C 3 18.487 35.613 5.759 1 58.89 ? C8 0XG 402 A 1 HETATM 6 C C9 0XG . . . C 3 19.01 34.601 6.537 1 57.84 ? C9 0XG 402 A 1 HETATM 7 C C10 0XG . . . C 3 19.591 34.909 7.75 1 58.66 ? C10 0XG 402 A 1 HETATM 8 C C11 0XG . . . C 3 19.652 36.216 8.179 1 61.49 ? C11 0XG 402 A 1 HETATM 9 C C13 0XG . . . C 3 19.555 32.121 6.462 1 54.8 ? C13 0XG 402 A 1 HETATM 10 C C15 0XG . . . C 3 19.77 29.881 6.144 1 53.79 ? C15 0XG 402 A 1 HETATM 11 C C16 0XG . . . C 3 20.698 29.789 7.153 1 54.4 ? C16 0XG 402 A 1 HETATM 12 N N18 0XG . . . C 3 20.45 32.137 7.462 1 55.75 ? N18 0XG 402 A 1 HETATM 13 C C20 0XG . . . C 3 22.544 32.194 8.962 1 54.54 ? C20 0XG 402 A 1 HETATM 14 C C21 0XG . . . C 3 21.262 28.504 7.47 1 54.82 ? C21 0XG 402 A 1 HETATM 15 C C22 0XG . . . C 3 21.992 28.04 8.549 1 55.75 ? C22 0XG 402 A 1 HETATM 16 C C24 0XG . . . C 3 21.834 26.098 7.261 1 55.41 ? C24 0XG 402 A 1 HETATM 17 O O28 0XG . . . C 3 23.105 24.586 9.175 1 54.57 ? O28 0XG 402 A 1 HETATM 18 N N2 0XG . . . C 3 20.14 39.371 7.216 1 67.65 ? N2 0XG 402 A 1 HETATM 19 C C4 0XG . . . C 3 19.18 38.6 7.833 1 66.28 ? C4 0XG 402 A 1 HETATM 20 C C6 0XG . . . C 3 19.124 37.207 7.38 1 63.73 ? C6 0XG 402 A 1 HETATM 21 N N12 0XG . . . C 3 18.907 33.293 6.032 1 57.22 ? N12 0XG 402 A 1 HETATM 22 N N14 0XG . . . C 3 19.191 31.025 5.785 1 54.22 ? N14 0XG 402 A 1 HETATM 23 C C17 0XG . . . C 3 21.011 30.965 7.794 1 54.62 ? C17 0XG 402 A 1 HETATM 24 O O19 0XG . . . C 3 21.946 30.909 8.825 1 55.75 ? O19 0XG 402 A 1 HETATM 25 C C23 0XG . . . C 3 22.316 26.662 8.417 1 56.84 ? C23 0XG 402 A 1 HETATM 26 S S25 0XG . . . C 3 20.987 27.254 6.327 1 52.95 ? S25 0XG 402 A 1 HETATM 27 C C26 0XG . . . C 3 23.107 25.823 9.426 1 56.49 ? C26 0XG 402 A 1 HETATM 28 O O27 0XG . . . C 3 23.658 26.433 10.384 1 57.14 ? O27 0XG 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #