data_4GRF # _model_server_result.job_id x0hmWdpAjafkh24eivd_HA _model_server_result.datetime_utc '2025-03-01 04:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4grf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 4GRF # _exptl.entry_id 4GRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GRF _cell.length_a 34.664 _cell.length_b 52.65 _cell.length_c 82.622 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 41 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 289 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 44 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 292 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.075 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 4GRF _atom_sites.fract_transf_matrix[1][1] 0.028848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 1 CL CL . C 2 CL A 1 502 1 CL CL . D 2 CL A 1 503 1 CL CL . E 3 SO4 A 1 504 1 SO4 SO4 . F 2 CL A 1 505 1 CL CL . G 2 CL A 1 506 1 CL CL . H 4 GSH A 1 507 1 GSH UNL . I 5 HOH A 1 601 5 HOH HOH . I 5 HOH A 2 602 6 HOH HOH . I 5 HOH A 3 603 7 HOH HOH . I 5 HOH A 4 604 9 HOH HOH . I 5 HOH A 5 605 13 HOH HOH . I 5 HOH A 6 606 14 HOH HOH . I 5 HOH A 7 607 15 HOH HOH . I 5 HOH A 8 608 16 HOH HOH . I 5 HOH A 9 609 18 HOH HOH . I 5 HOH A 10 610 19 HOH HOH . I 5 HOH A 11 611 20 HOH HOH . I 5 HOH A 12 612 22 HOH HOH . I 5 HOH A 13 613 23 HOH HOH . I 5 HOH A 14 614 24 HOH HOH . I 5 HOH A 15 615 26 HOH HOH . I 5 HOH A 16 616 27 HOH HOH . I 5 HOH A 17 617 28 HOH HOH . I 5 HOH A 18 618 29 HOH HOH . I 5 HOH A 19 619 30 HOH HOH . I 5 HOH A 20 620 32 HOH HOH . I 5 HOH A 21 621 33 HOH HOH . I 5 HOH A 22 622 35 HOH HOH . I 5 HOH A 23 623 37 HOH HOH . I 5 HOH A 24 624 38 HOH HOH . I 5 HOH A 25 625 40 HOH HOH . I 5 HOH A 26 626 41 HOH HOH . I 5 HOH A 27 627 42 HOH HOH . I 5 HOH A 28 628 47 HOH HOH . I 5 HOH A 29 629 49 HOH HOH . I 5 HOH A 30 630 50 HOH HOH . I 5 HOH A 31 631 51 HOH HOH . I 5 HOH A 32 632 52 HOH HOH . I 5 HOH A 33 633 53 HOH HOH . I 5 HOH A 34 634 54 HOH HOH . I 5 HOH A 35 635 57 HOH HOH . I 5 HOH A 36 636 58 HOH HOH . I 5 HOH A 37 637 59 HOH HOH . I 5 HOH A 38 638 60 HOH HOH . I 5 HOH A 39 639 62 HOH HOH . I 5 HOH A 40 640 63 HOH HOH . I 5 HOH A 41 641 65 HOH HOH . I 5 HOH A 42 642 66 HOH HOH . I 5 HOH A 43 643 68 HOH HOH . I 5 HOH A 44 644 69 HOH HOH . I 5 HOH A 45 645 72 HOH HOH . I 5 HOH A 46 646 74 HOH HOH . I 5 HOH A 47 647 76 HOH HOH . I 5 HOH A 48 648 78 HOH HOH . I 5 HOH A 49 649 79 HOH HOH . I 5 HOH A 50 650 80 HOH HOH . I 5 HOH A 51 651 81 HOH HOH . I 5 HOH A 52 652 82 HOH HOH . I 5 HOH A 53 653 87 HOH HOH . I 5 HOH A 54 654 90 HOH HOH . I 5 HOH A 55 655 91 HOH HOH . I 5 HOH A 56 656 92 HOH HOH . I 5 HOH A 57 657 99 HOH HOH . I 5 HOH A 58 658 100 HOH HOH . I 5 HOH A 59 659 101 HOH HOH . I 5 HOH A 60 660 102 HOH HOH . I 5 HOH A 61 661 103 HOH HOH . I 5 HOH A 62 662 105 HOH HOH . I 5 HOH A 63 663 106 HOH HOH . I 5 HOH A 64 664 108 HOH HOH . I 5 HOH A 65 665 110 HOH HOH . I 5 HOH A 66 666 114 HOH HOH . I 5 HOH A 67 667 119 HOH HOH . I 5 HOH A 68 668 124 HOH HOH . I 5 HOH A 69 669 127 HOH HOH . I 5 HOH A 70 670 128 HOH HOH . I 5 HOH A 71 671 129 HOH HOH . I 5 HOH A 72 672 130 HOH HOH . I 5 HOH A 73 673 133 HOH HOH . I 5 HOH A 74 674 134 HOH HOH . I 5 HOH A 75 675 136 HOH HOH . I 5 HOH A 76 676 137 HOH HOH . I 5 HOH A 77 677 138 HOH HOH . I 5 HOH A 78 678 139 HOH HOH . I 5 HOH A 79 679 142 HOH HOH . I 5 HOH A 80 680 144 HOH HOH . I 5 HOH A 81 681 147 HOH HOH . I 5 HOH A 82 682 152 HOH HOH . I 5 HOH A 83 683 155 HOH HOH . I 5 HOH A 84 684 156 HOH HOH . I 5 HOH A 85 685 158 HOH HOH . I 5 HOH A 86 686 165 HOH HOH . I 5 HOH A 87 687 166 HOH HOH . I 5 HOH A 88 688 169 HOH HOH . I 5 HOH A 89 689 170 HOH HOH . I 5 HOH A 90 690 171 HOH HOH . I 5 HOH A 91 691 172 HOH HOH . I 5 HOH A 92 692 173 HOH HOH . I 5 HOH A 93 693 174 HOH HOH . I 5 HOH A 94 694 175 HOH HOH . I 5 HOH A 95 695 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . H 4 38.531 54.572 21.34 0.5 38.59 ? N1 GSH 507 A 1 HETATM 2 C CA1 GSH . . . H 4 37.411 55.452 21.77 0.5 31.42 ? CA1 GSH 507 A 1 HETATM 3 C C1 GSH . . . H 4 37.82 56.376 22.885 0.5 34.53 ? C1 GSH 507 A 1 HETATM 4 O O11 GSH . . . H 4 37.556 57.595 22.782 0.5 27.98 ? O11 GSH 507 A 1 HETATM 5 O O12 GSH . . . H 4 38.408 55.893 23.88 0.5 30.68 ? O12 GSH 507 A 1 HETATM 6 C CB1 GSH . . . H 4 36.236 54.573 22.194 0.5 32.72 ? CB1 GSH 507 A 1 HETATM 7 C CG1 GSH . . . H 4 35.192 55.357 22.986 0.5 34.66 ? CG1 GSH 507 A 1 HETATM 8 C CD1 GSH . . . H 4 34.216 56.053 22.06 0.5 36.66 ? CD1 GSH 507 A 1 HETATM 9 O OE1 GSH . . . H 4 34.255 55.916 20.845 0.5 29.54 ? OE1 GSH 507 A 1 HETATM 10 N N2 GSH . . . H 4 33.296 56.816 22.647 0.5 32.06 ? N2 GSH 507 A 1 HETATM 11 C CA2 GSH . . . H 4 32.275 57.473 21.864 0.5 25.46 ? CA2 GSH 507 A 1 HETATM 12 C C2 GSH . . . H 4 32.86 58.407 20.847 0.5 36.95 ? C2 GSH 507 A 1 HETATM 13 O O2 GSH . . . H 4 33.698 59.239 21.162 0.5 37.03 ? O2 GSH 507 A 1 HETATM 14 C CB2 GSH . . . H 4 31.314 58.241 22.772 0.5 23.83 ? CB2 GSH 507 A 1 HETATM 15 S SG2 GSH . . . H 4 30.685 57.232 24.13 0.5 29.51 ? SG2 GSH 507 A 1 HETATM 16 N N3 GSH . . . H 4 32.382 58.247 19.618 0.5 36.14 ? N3 GSH 507 A 1 HETATM 17 C CA3 GSH . . . H 4 32.76 59.065 18.483 0.5 37.94 ? CA3 GSH 507 A 1 HETATM 18 C C3 GSH . . . H 4 31.789 58.851 17.335 0.5 44.99 ? C3 GSH 507 A 1 HETATM 19 O O31 GSH . . . H 4 31.996 59.456 16.266 0.5 46.16 ? O31 GSH 507 A 1 HETATM 20 O O32 GSH . . . H 4 30.814 58.073 17.487 0.5 39.84 ? O32 GSH 507 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #