data_4GRL # _model_server_result.job_id d11vtUOyIKMQJMzgONktzg _model_server_result.datetime_utc '2025-08-22 06:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4grl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4GRL # _exptl.entry_id 4GRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4GRL _cell.length_a 72.011 _cell.length_b 125.583 _cell.length_c 134.794 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 A CYS 107 1_555 A SG CYS 165 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 17 B CYS 15 1_555 B SG CYS 81 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 B SG CYS 119 B CYS 117 1_555 B SG CYS 175 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 25 C CYS 23 1_555 C SG CYS 92 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 137 C CYS 135 1_555 C SG CYS 187 C CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 C SG CYS 162 C CYS 160 1_555 D SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 D SG CYS 48 D CYS 48 1_555 D SG CYS 117 D CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 D SG CYS 168 D CYS 168 1_555 D SG CYS 233 D CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 21 B ASN 19 1_555 E C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4GRL _atom_sites.fract_transf_matrix[1][1] 0.013873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG B 1 201 5467 NAG NAG . F 6 HOH A 1 201 4 HOH HOH . F 6 HOH A 2 202 8 HOH HOH . F 6 HOH A 3 203 27 HOH HOH . F 6 HOH A 4 204 29 HOH HOH . F 6 HOH A 5 205 31 HOH HOH . F 6 HOH A 6 206 35 HOH HOH . G 6 HOH B 1 301 1 HOH HOH . G 6 HOH B 2 302 5 HOH HOH . G 6 HOH B 3 303 6 HOH HOH . G 6 HOH B 4 304 11 HOH HOH . G 6 HOH B 5 305 19 HOH HOH . G 6 HOH B 6 306 23 HOH HOH . G 6 HOH B 7 307 24 HOH HOH . H 6 HOH C 1 301 2 HOH HOH . H 6 HOH C 2 302 12 HOH HOH . H 6 HOH C 3 303 21 HOH HOH . H 6 HOH C 4 304 25 HOH HOH . H 6 HOH C 5 305 26 HOH HOH . H 6 HOH C 6 306 30 HOH HOH . H 6 HOH C 7 307 38 HOH HOH . I 6 HOH D 1 301 3 HOH HOH . I 6 HOH D 2 302 7 HOH HOH . I 6 HOH D 3 303 9 HOH HOH . I 6 HOH D 4 304 10 HOH HOH . I 6 HOH D 5 305 13 HOH HOH . I 6 HOH D 6 306 14 HOH HOH . I 6 HOH D 7 307 15 HOH HOH . I 6 HOH D 8 308 16 HOH HOH . I 6 HOH D 9 309 17 HOH HOH . I 6 HOH D 10 310 18 HOH HOH . I 6 HOH D 11 311 20 HOH HOH . I 6 HOH D 12 312 22 HOH HOH . I 6 HOH D 13 313 28 HOH HOH . I 6 HOH D 14 314 34 HOH HOH . I 6 HOH D 15 315 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -26.415 9.064 16.732 1 118.85 ? C1 NAG 201 B 1 HETATM 2 C C2 NAG . . . E 5 -27.584 8.093 16.604 1 129.02 ? C2 NAG 201 B 1 HETATM 3 C C3 NAG . . . E 5 -28.895 8.865 16.66 1 129.05 ? C3 NAG 201 B 1 HETATM 4 C C4 NAG . . . E 5 -28.969 9.652 17.96 1 126.91 ? C4 NAG 201 B 1 HETATM 5 C C5 NAG . . . E 5 -27.742 10.555 18.113 1 121.53 ? C5 NAG 201 B 1 HETATM 6 C C6 NAG . . . E 5 -27.679 11.23 19.464 1 122.57 ? C6 NAG 201 B 1 HETATM 7 C C7 NAG . . . E 5 -27.062 6.034 15.362 1 136.76 ? C7 NAG 201 B 1 HETATM 8 C C8 NAG . . . E 5 -27.031 5.374 14.017 1 128.07 ? C8 NAG 201 B 1 HETATM 9 N N2 NAG . . . E 5 -27.492 7.303 15.384 1 135.8 ? N2 NAG 201 B 1 HETATM 10 O O3 NAG . . . E 5 -29.989 7.959 16.558 1 128.72 ? O3 NAG 201 B 1 HETATM 11 O O4 NAG . . . E 5 -30.145 10.455 17.993 1 127.89 ? O4 NAG 201 B 1 HETATM 12 O O5 NAG . . . E 5 -26.531 9.792 17.976 1 119.45 ? O5 NAG 201 B 1 HETATM 13 O O6 NAG . . . E 5 -26.339 11.436 19.891 1 123.59 ? O6 NAG 201 B 1 HETATM 14 O O7 NAG . . . E 5 -26.712 5.447 16.382 1 140.01 ? O7 NAG 201 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 1054 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #