data_4GRT # _model_server_result.job_id aEEGw3F6okG3_eG9zJ06Lw _model_server_result.datetime_utc '2024-11-16 00:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4grt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":479}' # _entry.id 4GRT # _exptl.entry_id 4GRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 58.15 _cell.entry_id 4GRT _cell.length_a 119.77 _cell.length_b 84.98 _cell.length_c 63.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'B 1 1 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 164.613714 72.184775 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? covale ? covale1 C SG6 GCG . A GCG 17 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4GRT _atom_sites.fract_transf_matrix[1][1] 0.008349 _atom_sites.fract_transf_matrix[1][2] -0.005187 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 479 479 FAD FAD . C 3 GCG A 1 17 17 GCG TS3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 59.543 51.245 20.098 1 2 ? PA FAD 479 A 1 HETATM 2 O O1A FAD . . . B 2 59.715 52.696 19.735 1 2 ? O1A FAD 479 A 1 HETATM 3 O O2A FAD . . . B 2 60.363 50.222 19.432 1 5.69 ? O2A FAD 479 A 1 HETATM 4 O O5B FAD . . . B 2 58.007 50.776 19.689 1 6.88 ? O5B FAD 479 A 1 HETATM 5 C C5B FAD . . . B 2 56.729 51.262 20.221 1 5.07 ? C5B FAD 479 A 1 HETATM 6 C C4B FAD . . . B 2 55.523 50.793 19.453 1 7.66 ? C4B FAD 479 A 1 HETATM 7 O O4B FAD . . . B 2 54.586 51.67 20.105 1 11.87 ? O4B FAD 479 A 1 HETATM 8 C C3B FAD . . . B 2 55.479 51.162 17.978 1 9.12 ? C3B FAD 479 A 1 HETATM 9 O O3B FAD . . . B 2 55.21 50.047 17.11 1 6.45 ? O3B FAD 479 A 1 HETATM 10 C C2B FAD . . . B 2 54.44 52.266 18.015 1 9.31 ? C2B FAD 479 A 1 HETATM 11 O O2B FAD . . . B 2 53.598 52.203 16.932 1 11.95 ? O2B FAD 479 A 1 HETATM 12 C C1B FAD . . . B 2 53.511 52.125 19.234 1 12.29 ? C1B FAD 479 A 1 HETATM 13 N N9A FAD . . . B 2 52.83 53.45 19.73 1 12.17 ? N9A FAD 479 A 1 HETATM 14 C C8A FAD . . . B 2 53.408 54.707 19.972 1 8.21 ? C8A FAD 479 A 1 HETATM 15 N N7A FAD . . . B 2 52.689 55.488 20.732 1 8.83 ? N7A FAD 479 A 1 HETATM 16 C C5A FAD . . . B 2 51.501 54.816 20.956 1 8.63 ? C5A FAD 479 A 1 HETATM 17 C C6A FAD . . . B 2 50.269 55.248 21.595 1 5.41 ? C6A FAD 479 A 1 HETATM 18 N N6A FAD . . . B 2 49.708 56.468 21.574 1 2 ? N6A FAD 479 A 1 HETATM 19 N N1A FAD . . . B 2 49.416 54.228 21.75 1 5.64 ? N1A FAD 479 A 1 HETATM 20 C C2A FAD . . . B 2 49.54 53.077 21.02 1 7.07 ? C2A FAD 479 A 1 HETATM 21 N N3A FAD . . . B 2 50.539 52.671 20.211 1 3.44 ? N3A FAD 479 A 1 HETATM 22 C C4A FAD . . . B 2 51.527 53.6 20.262 1 9.31 ? C4A FAD 479 A 1 HETATM 23 N N1 FAD . . . B 2 68.46 48.635 19.534 1 6.44 ? N1 FAD 479 A 1 HETATM 24 C C2 FAD . . . B 2 69.315 47.552 19.775 1 10.29 ? C2 FAD 479 A 1 HETATM 25 O O2 FAD . . . B 2 69.358 46.817 20.788 1 12.46 ? O2 FAD 479 A 1 HETATM 26 N N3 FAD . . . B 2 70.185 47.137 18.799 1 5.58 ? N3 FAD 479 A 1 HETATM 27 C C4 FAD . . . B 2 70.267 47.623 17.608 1 3.88 ? C4 FAD 479 A 1 HETATM 28 O O4 FAD . . . B 2 70.991 47.131 16.807 1 6.22 ? O4 FAD 479 A 1 HETATM 29 C C4X FAD . . . B 2 69.382 48.74 17.279 1 4.65 ? C4X FAD 479 A 1 HETATM 30 N N5 FAD . . . B 2 69.461 49.199 16.084 1 2 ? N5 FAD 479 A 1 HETATM 31 C C5X FAD . . . B 2 68.655 50.183 15.749 1 2 ? C5X FAD 479 A 1 HETATM 32 C C6 FAD . . . B 2 68.842 50.573 14.446 1 3.39 ? C6 FAD 479 A 1 HETATM 33 C C7 FAD . . . B 2 68.07 51.578 13.892 1 2.8 ? C7 FAD 479 A 1 HETATM 34 C C7M FAD . . . B 2 68.328 51.814 12.979 1 2 ? C7M FAD 479 A 1 HETATM 35 C C8 FAD . . . B 2 67.001 52.246 14.731 1 3.36 ? C8 FAD 479 A 1 HETATM 36 C C8M FAD . . . B 2 66.363 52.94 14.386 1 2 ? C8M FAD 479 A 1 HETATM 37 C C9 FAD . . . B 2 66.853 51.836 16.109 1 3.9 ? C9 FAD 479 A 1 HETATM 38 C C9A FAD . . . B 2 67.674 50.788 16.638 1 4.34 ? C9A FAD 479 A 1 HETATM 39 N N10 FAD . . . B 2 67.633 50.264 17.989 1 4.8 ? N10 FAD 479 A 1 HETATM 40 C C10 FAD . . . B 2 68.488 49.202 18.359 1 4.76 ? C10 FAD 479 A 1 HETATM 41 C C1' FAD . . . B 2 66.823 50.997 19.046 1 5.8 ? C1' FAD 479 A 1 HETATM 42 C C2' FAD . . . B 2 65.782 50.095 19.659 1 4.52 ? C2' FAD 479 A 1 HETATM 43 O O2' FAD . . . B 2 65.261 49.208 18.638 1 5.59 ? O2' FAD 479 A 1 HETATM 44 C C3' FAD . . . B 2 64.833 50.777 20.652 1 2 ? C3' FAD 479 A 1 HETATM 45 O O3' FAD . . . B 2 65.343 51.023 21.93 1 2 ? O3' FAD 479 A 1 HETATM 46 C C4' FAD . . . B 2 63.864 49.677 20.736 1 2.62 ? C4' FAD 479 A 1 HETATM 47 O O4' FAD . . . B 2 63.182 49.804 19.506 1 4.85 ? O4' FAD 479 A 1 HETATM 48 C C5' FAD . . . B 2 62.84 49.491 21.88 1 5.95 ? C5' FAD 479 A 1 HETATM 49 O O5' FAD . . . B 2 61.861 50.495 21.793 1 3.89 ? O5' FAD 479 A 1 HETATM 50 P P FAD . . . B 2 60.628 50.709 22.716 1 2.05 ? P FAD 479 A 1 HETATM 51 O O1P FAD . . . B 2 60.375 49.423 23.391 1 7.86 ? O1P FAD 479 A 1 HETATM 52 O O2P FAD . . . B 2 60.657 51.971 23.586 1 2 ? O2P FAD 479 A 1 HETATM 53 O O3P FAD . . . B 2 59.5 50.828 21.622 1 2.67 ? O3P FAD 479 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #