data_4GRV # _model_server_result.job_id QxvwYU3uV68ulu7HV_jw2w _model_server_result.datetime_utc '2025-01-26 16:36:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4grv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4GRV # _exptl.entry_id 4GRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.75 _cell.angle_gamma 90 _cell.entry_id 4GRV _cell.length_a 49.96 _cell.length_b 69.619 _cell.length_c 97.55 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4GRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 142 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 193 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 225 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4GRV _atom_sites.fract_transf_matrix[1][1] 0.020016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE A 1 601 1 EPE EPE . D 3 EPE A 1 602 1 EPE EPE . E 4 HOH A 1 701 1 HOH HOH . E 4 HOH A 2 702 2 HOH HOH . E 4 HOH A 3 703 3 HOH HOH . E 4 HOH A 4 704 4 HOH HOH . E 4 HOH A 5 705 5 HOH HOH . E 4 HOH A 6 706 6 HOH HOH . E 4 HOH A 7 707 7 HOH HOH . E 4 HOH A 8 708 8 HOH HOH . E 4 HOH A 9 709 10 HOH HOH . E 4 HOH A 10 710 11 HOH HOH . E 4 HOH A 11 711 14 HOH HOH . E 4 HOH A 12 712 16 HOH HOH . E 4 HOH A 13 713 31 HOH HOH . E 4 HOH A 14 714 32 HOH HOH . E 4 HOH A 15 715 36 HOH HOH . E 4 HOH A 16 716 37 HOH HOH . E 4 HOH A 17 717 40 HOH HOH . E 4 HOH A 18 718 41 HOH HOH . E 4 HOH A 19 719 42 HOH HOH . E 4 HOH A 20 720 43 HOH HOH . E 4 HOH A 21 721 45 HOH HOH . E 4 HOH A 22 722 46 HOH HOH . E 4 HOH A 23 723 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 83.788 -30.901 64.044 1 107.57 ? N1 EPE 601 A 1 HETATM 2 C C2 EPE . . . C 3 85.034 -31.464 64.591 1 106.5 ? C2 EPE 601 A 1 HETATM 3 C C3 EPE . . . C 3 84.834 -31.532 66.103 1 109.5 ? C3 EPE 601 A 1 HETATM 4 N N4 EPE . . . C 3 83.421 -31.59 66.433 1 111.47 ? N4 EPE 601 A 1 HETATM 5 C C5 EPE . . . C 3 82.542 -32.346 65.572 1 109.72 ? C5 EPE 601 A 1 HETATM 6 C C6 EPE . . . C 3 82.644 -31.832 64.139 1 108.64 ? C6 EPE 601 A 1 HETATM 7 C C7 EPE . . . C 3 82.891 -30.991 67.643 1 111.01 ? C7 EPE 601 A 1 HETATM 8 C C8 EPE . . . C 3 83.166 -29.495 67.757 1 109.17 ? C8 EPE 601 A 1 HETATM 9 O O8 EPE . . . C 3 82.932 -29.072 69.083 1 100.9 ? O8 EPE 601 A 1 HETATM 10 C C9 EPE . . . C 3 83.971 -30.329 62.702 1 105.87 ? C9 EPE 601 A 1 HETATM 11 C C10 EPE . . . C 3 84.13 -31.431 61.668 1 106.8 ? C10 EPE 601 A 1 HETATM 12 S S EPE . . . C 3 85.389 -31.082 60.417 1 151.45 ? S EPE 601 A 1 HETATM 13 O O1S EPE . . . C 3 86.523 -30.382 61.006 1 149.69 ? O1S EPE 601 A 1 HETATM 14 O O2S EPE . . . C 3 84.804 -30.291 59.338 1 150.04 ? O2S EPE 601 A 1 HETATM 15 O O3S EPE . . . C 3 85.868 -32.335 59.864 1 152.51 ? O3S EPE 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #